Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0922
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    28   0.11 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    28   0.11 
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   4.0  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    22   5.3  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   7.1  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   9.3  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    21   9.3  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 27.9 bits (59), Expect = 0.11
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +1

Query: 424 VPLGTRAELSCRWQLGPADILYSVKWYKDGKE 519
           V LG  AE  C     P    + + WYKDG++
Sbjct: 342 VHLGGNAEFRCEVSTHPQAGPHFITWYKDGRQ 373


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 27.9 bits (59), Expect = 0.11
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +1

Query: 424 VPLGTRAELSCRWQLGPADILYSVKWYKDGKE 519
           V LG  AE  C     P    + + WYKDG++
Sbjct: 342 VHLGGNAEFRCEVSTHPQAGPHFITWYKDGRQ 373


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 232 SIHKLFSSSTSRPFPREGTASR 167
           SI  + S+S+ +PFPR  T ++
Sbjct: 407 SITSVNSTSSPKPFPRRATLAQ 428


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 527 DTCHEIKSHEENSLSRES 580
           D+ H I   EEN L+ ES
Sbjct: 81  DSIHSIDGDEENGLTSES 98


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -3

Query: 79  FTTDKLRSVTNLF 41
           + T KLR+VTN+F
Sbjct: 91  YHTSKLRNVTNMF 103


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 559 FFVALDLVARV*RIPFRLYT 500
           F +A  L+A +  IPF +YT
Sbjct: 161 FILAAWLIALISAIPFAIYT 180


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
          protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -3

Query: 76 TTDKLRSVTNLF 41
          TT +LRSVTN F
Sbjct: 64 TTRRLRSVTNCF 75


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,192
Number of Sequences: 438
Number of extensions: 5013
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)