Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0922
         (750 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g05930.1 68414.m00622 hypothetical protein contains Pfam prof...    30   1.4  
At5g36740.1 68418.m04402 PHD finger family protein                     29   2.5  
At5g36670.1 68418.m04388 PHD finger family protein                     29   2.5  
At4g11670.1 68417.m01865 expressed protein contains Pfam PF05664...    29   4.4  
At5g20430.1 68418.m02429 mob1/phocein family protein contains Pf...    28   5.8  
At3g12680.1 68416.m01582 floral homeotic protein (HUA1) identica...    28   5.8  
At3g27670.1 68416.m03455 expressed protein                             28   7.6  
At1g47570.1 68414.m05281 zinc finger (C3HC4-type RING finger) fa...    28   7.6  

>At1g05930.1 68414.m00622 hypothetical protein contains Pfam profile
           PF03754: Domain of unknown function (DUF313)
          Length = 318

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +1

Query: 514 KEFFRHVPRDQEPRRKFPLPGVDVEKSSTNGANV 615
           +EFF HVPR   P  ++P P  +    +++  N+
Sbjct: 62  REFFSHVPRKIRPALRYPQPNFENPNGASSSLNL 95


>At5g36740.1 68418.m04402 PHD finger family protein
          Length = 1179

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 8/61 (13%)
 Frame = +2

Query: 431  LAPELNFPVDGNSARPTSFIPSN--------GIKTERNSSDTCHEIKSHEENSLSRESML 586
            LAPE+  PVD    +P     S         G+++  N  D+C ++   EE    RES L
Sbjct: 978  LAPEMTLPVDVEENKPEESKDSAHERNCATAGVESPSNPVDSCLKLTYVEEGDNDRESNL 1037

Query: 587  K 589
            K
Sbjct: 1038 K 1038


>At5g36670.1 68418.m04388 PHD finger family protein
          Length = 1193

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 8/61 (13%)
 Frame = +2

Query: 431  LAPELNFPVDGNSARPTSFIPSN--------GIKTERNSSDTCHEIKSHEENSLSRESML 586
            LAPE+  PVD    +P     S         G+++  N  D+C ++   EE    RES L
Sbjct: 992  LAPEMTLPVDVEENKPEESKDSAHERNCATAGVESPSNPVDSCLKLTYVEEGDNDRESNL 1051

Query: 587  K 589
            K
Sbjct: 1052 K 1052


>At4g11670.1 68417.m01865 expressed protein contains Pfam PF05664:
           Protein of unknown function (DUF810)
          Length = 985

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +1

Query: 550 PRRKFPLPGVDVEKSSTNGANVT 618
           P  + P P V++EKSS NGA+++
Sbjct: 100 PPHRMPPPPVNIEKSSNNGADMS 122


>At5g20430.1 68418.m02429 mob1/phocein family protein contains Pfam
           profile: PF03637 mob1/phocein family
          Length = 122

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
 Frame = -1

Query: 288 HLFSKLVSLS-PPRHTHFTNQSIN--FSVHQH--HGRFPVRAQLQDTAKSSLCNARFLRH 124
           H+F K      PP    F  + +   F V+ H  H  FP    L + A  + C  R+L  
Sbjct: 38  HIFPKKTGEPFPPNFEDFVKRILRKLFRVYAHIYHSHFPKIVTLNEQAHLNTCFHRYLLF 97

Query: 123 STAYVILTKHKFHGISPLISYV 58
            + + ++ K +   I  L+  +
Sbjct: 98  VSEFQLVDKEEMVPIQKLVETI 119


>At3g12680.1 68416.m01582 floral homeotic protein (HUA1) identical
           to floral homeotic protein HUA1 [Arabidopsis thaliana]
           gi|16797661|gb|AAK01470
          Length = 524

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 574 GVDVEKSSTNGANVTLAPAILETGRALPLR 663
           G+  E  +TN  +VT  PA+    + LP+R
Sbjct: 311 GLTSEPDATNNPHVTFTPALYHNSKGLPVR 340


>At3g27670.1 68416.m03455 expressed protein
          Length = 1841

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -1

Query: 189 PVRAQLQDTAKSSLCNARFLRHSTAYVILTKHKFH-GISPLISY 61
           PVRA L   + S LC A  +   TA+ ++ KH  H  + PL++Y
Sbjct: 655 PVRA-LGFQSLSHLCEADVIDFYTAWDVIKKHAQHIKLDPLLAY 697


>At1g47570.1 68414.m05281 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam PF00097: Zinc finger, C3HC4
           type (RING finger)
          Length = 466

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 296 PQCTCSLNWYRCRHH 252
           PQC  ++  YRC HH
Sbjct: 257 PQCVANIGGYRCEHH 271


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,096,393
Number of Sequences: 28952
Number of extensions: 373138
Number of successful extensions: 1025
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1023
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)