Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0921
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0079 - 20732041-20732097,20732219-20732301,20732661-207328... 249 2e-66
01_06_1301 + 36122797-36122838,36122958-36123033,36123145-361232... 243 1e-64
01_01_0322 - 2589074-2589121,2589214-2589296,2589414-2589492,258... 231 6e-61
02_03_0230 + 16620856-16620991,16622157-16622239,16632090-166321... 31 0.98
04_04_0148 - 23114000-23114113,23114215-23114350,23114813-231149... 29 5.2
08_02_0546 - 18474217-18475133,18475207-18475396,18475870-184763... 28 9.1
01_06_1409 - 37111954-37112061,37112295-37112330,37112434-371124... 28 9.1
01_05_0154 + 18667338-18670110,18670233-18670561,18670914-186709... 28 9.1
>09_06_0079 -
20732041-20732097,20732219-20732301,20732661-20732834,
20732927-20733059,20733226-20733310,20733527-20733650,
20733835-20733904,20734643-20734669,20734788-20734949
Length = 304
Score = 249 bits (609), Expect = 2e-66
Identities = 119/234 (50%), Positives = 159/234 (67%)
Frame = +2
Query: 2 FVVGGNWKMNGDKNQINEIVNNLKKGPLDPNVEVIVGVPAIYLSYVKTIIPDNVEVAAQN 181
F VGGNWK NG K+ ++++V L L+P+V+V+V P IY+ VK + D +EV+AQN
Sbjct: 55 FFVGGNWKCNGTKDSVSKLVTELNAATLEPDVDVVVAPPFIYIDQVKNSLTDRIEVSAQN 114
Query: 182 CWKSPKGAFTGEISPAMIKDVGVNWVILGHSERRTIFGEKDELVAEKVAHALESGLKVIA 361
W GA+TGEIS + D+G WVILGHSERR + GE D+ + +K A+AL +KVIA
Sbjct: 115 VWIGKGGAYTGEISAEQLVDIGCQWVILGHSERRHVIGEDDQFIGKKAAYALSQNVKVIA 174
Query: 362 CIGETLEERESGKTEEVVFRQLKALVSAIGDKWENIVLAYEPVWAIGTGKTATPQQAQDV 541
CIGE LEERE+GKT +V F+Q+KA +I W ++V+AYEPVWAIGTGK ATP+QAQ+V
Sbjct: 175 CIGELLEEREAGKTFDVCFKQMKAFADSI-TNWADVVIAYEPVWAIGTGKVATPEQAQEV 233
Query: 542 HHALRNWLSANVSGSVSDAVRIQYRWLGHSC*C*RALHXAKTLDGS*LVGXQSL 703
H A+R+WL NVS V+ +RI Y ++ C L + +DG LVG SL
Sbjct: 234 HAAVRDWLKTNVSPEVASGIRIIYGGSVNAANC-AELAKKEDIDGF-LVGGASL 285
>01_06_1301 +
36122797-36122838,36122958-36123033,36123145-36123268,
36123675-36123759,36124076-36124208,36124712-36124806,
36124982-36125060,36125205-36125287,36125505-36125555
Length = 255
Score = 243 bits (595), Expect = 1e-64
Identities = 127/250 (50%), Positives = 160/250 (64%), Gaps = 2/250 (0%)
Frame = +2
Query: 2 FVVGGNWKMNGDKNQINEIVNNLKKG--PLDPNVEVIVGVPAIYLSYVKTIIPDNVEVAA 175
F VGGNWK NG + +IV L + P + VEV+V P ++L VK ++ + VAA
Sbjct: 6 FFVGGNWKCNGTGEDVKKIVTVLNEAEVPSEDVVEVVVSPPFVFLPQVKGLLRPDFSVAA 65
Query: 176 QNCWKSPKGAFTGEISPAMIKDVGVNWVILGHSERRTIFGEKDELVAEKVAHALESGLKV 355
QNCW GAFTGEIS M+ ++ V WVILGHSERR + GE + VA+K+A+AL G+KV
Sbjct: 66 QNCWVRKGGAFTGEISAEMLVNLQVPWVILGHSERRALMGESSDFVADKIAYALSQGIKV 125
Query: 356 IACIGETLEERESGKTEEVVFRQLKALVSAIGDKWENIVLAYEPVWAIGTGKTATPQQAQ 535
IACIGETLE+RE+G T EVV Q KA+ I D W N+VLAYEPVWAIGTGK ATP QAQ
Sbjct: 126 IACIGETLEQREAGTTMEVVAAQTKAIAEKISD-WTNVVLAYEPVWAIGTGKVATPAQAQ 184
Query: 536 DVHHALRNWLSANVSGSVSDAVRIQYRWLGHSC*C*RALHXAKTLDGS*LVGXQSLTXXF 715
+VH LR WL NVS +V+++ RI YR + C + L +DG LVG SL F
Sbjct: 185 EVHDGLRKWLVTNVSPAVAESTRIIYRGSVNGANC-KELAAKPDVDGF-LVGGASLKPEF 242
Query: 716 XKXLQMLIXK 745
++ K
Sbjct: 243 VDIIKSATVK 252
>01_01_0322 -
2589074-2589121,2589214-2589296,2589414-2589492,
2589622-2589716,2590198-2590330,2590601-2590685,
2591040-2591163,2591297-2591372,2594305-2594319
Length = 245
Score = 231 bits (564), Expect = 6e-61
Identities = 118/233 (50%), Positives = 156/233 (66%), Gaps = 2/233 (0%)
Frame = +2
Query: 23 KMNGDKNQINEIVNNLKKGPLDPN--VEVIVGVPAIYLSYVKTIIPDNVEVAAQNCWKSP 196
++NG +Q+++IV L +G + VEV+V P ++L VK+ + ++VAAQNCW
Sbjct: 4 ELNGTTDQVDKIVKILNEGQIASTDVVEVVVSPPYVFLPVVKSQLRPEIQVAAQNCWVKK 63
Query: 197 KGAFTGEISPAMIKDVGVNWVILGHSERRTIFGEKDELVAEKVAHALESGLKVIACIGET 376
GAFTGE+S M+ ++ + WVILGHSERR++ GE +E V +KVA+AL GLKVIAC+GET
Sbjct: 64 GGAFTGEVSAEMLVNLSIPWVILGHSERRSLLGESNEFVGDKVAYALSQGLKVIACVGET 123
Query: 377 LEERESGKTEEVVFRQLKALVSAIGDKWENIVLAYEPVWAIGTGKTATPQQAQDVHHALR 556
LE+RESG T +VV Q KA+ I D W N+V+AYEPVWAIGTGK ATP QAQ+VH LR
Sbjct: 124 LEQRESGSTMDVVAAQTKAISERIKD-WTNVVVAYEPVWAIGTGKVATPDQAQEVHDGLR 182
Query: 557 NWLSANVSGSVSDAVRIQYRWLGHSC*C*RALHXAKTLDGS*LVGXQSLTXXF 715
WL+ANVS V+++ RI Y C + L +DG LVG SL F
Sbjct: 183 KWLAANVSAEVAESTRIIYGGSVTGANC-KELAAKPDVDGF-LVGGASLKPEF 233
>02_03_0230 +
16620856-16620991,16622157-16622239,16632090-16632149,
16632795-16632903,16633285-16633337,16633503-16633559,
16633730-16633846
Length = 204
Score = 31.1 bits (67), Expect = 0.98
Identities = 22/64 (34%), Positives = 34/64 (53%)
Frame = +2
Query: 290 FGEKDELVAEKVAHALESGLKVIACIGETLEERESGKTEEVVFRQLKALVSAIGDKWENI 469
F E+ EL VA ES L + +T EE ++ K ++ F + +ALV+A +N+
Sbjct: 142 FIERAELKQMMVATLAESDLNLT---DQTFEEADTNKDGKIDFEEWQALVNAHPCLLKNM 198
Query: 470 VLAY 481
LAY
Sbjct: 199 TLAY 202
>04_04_0148 -
23114000-23114113,23114215-23114350,23114813-23114912,
23115003-23115113,23115197-23115234,23115359-23115429,
23116998-23117176,23117272-23117389
Length = 288
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -3
Query: 178 LGCNFDIIRNDSLHIRQVNSRNTNNYL 98
LG NF++ RND L I V +N L
Sbjct: 104 LGLNFEVYRNDELTIEDVKRKNPRGIL 130
>08_02_0546 -
18474217-18475133,18475207-18475396,18475870-18476313,
18476629-18477495,18478858-18479367
Length = 975
Score = 27.9 bits (59), Expect = 9.1
Identities = 20/76 (26%), Positives = 30/76 (39%)
Frame = +2
Query: 263 LGHSERRTIFGEKDELVAEKVAHALESGLKVIACIGETLEERESGKTEEVVFRQLKALVS 442
+ H R E D +V K+ + S L+ + +EE +S ++ L L
Sbjct: 425 ISHEYHRKRKQETDVVVHSKIETYIRSSLRT--AFAQKMEEADSKRSSRHPVPVLSILAK 482
Query: 443 AIGDKWENIVLAYEPV 490
AIGD Y PV
Sbjct: 483 AIGDLATKEKTVYSPV 498
>01_06_1409 -
37111954-37112061,37112295-37112330,37112434-37112498,
37112610-37112688,37112967-37113041,37113623-37114147
Length = 295
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = -2
Query: 416 KQLPQSCQILSLRESHQYRQ*LSSQIQGHEQPFQQQVHLFHQKLFFFQNDQ 264
++LPQ + ++ Q +Q L Q Q +Q QQQ QKL Q Q
Sbjct: 44 QKLPQHQHLQQQQQQQQQQQKLQQQQQQQQQKLQQQQQQQQQKLQQQQQQQ 94
>01_05_0154 +
18667338-18670110,18670233-18670561,18670914-18670939,
18671678-18671783
Length = 1077
Score = 27.9 bits (59), Expect = 9.1
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = -1
Query: 261 ITQFTPTSLIIAGEISPVKAPFGDFQQFWAATSTLSGMIVFT 136
+T +SL +AG ISPV Q +TLSG + FT
Sbjct: 80 VTSLNLSSLGLAGSISPVIGNLTFLQSLDLFNNTLSGDVYFT 121
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,248,208
Number of Sequences: 37544
Number of extensions: 414274
Number of successful extensions: 1010
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1004
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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