Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0921
(750 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5619| Best HMM Match : No HMM Matches (HMM E-Value=.) 166 2e-41
SB_12178| Best HMM Match : TIM (HMM E-Value=0) 146 1e-35
SB_2385| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.001
SB_39600| Best HMM Match : Sushi (HMM E-Value=0) 30 2.3
SB_44183| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_54138| Best HMM Match : rve (HMM E-Value=6.8e-24) 29 5.3
SB_56497| Best HMM Match : Extensin_2 (HMM E-Value=0.16) 29 5.3
SB_16761| Best HMM Match : PDZ (HMM E-Value=1.6e-08) 28 7.0
SB_25405| Best HMM Match : DUF343 (HMM E-Value=0.076) 28 7.0
SB_52498| Best HMM Match : Chromate_transp (HMM E-Value=0.17) 28 9.3
SB_10556| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
>SB_5619| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 399
Score = 166 bits (403), Expect = 2e-41
Identities = 99/205 (48%), Positives = 126/205 (61%)
Frame = +2
Query: 101 VIVGVPAIYLSYVKTIIPDNVEVAAQNCWKSPKGAFTGEISPAMIKDVGVNWVILGHSER 280
++V PA+YLSYV+ N+ VAAQNC+K GA ++W
Sbjct: 218 IVVSPPALYLSYVRKAAKQNIGVAAQNCYKVASGA--------------LHW-------- 255
Query: 281 RTIFGEKDELVAEKVAHALESGLKVIACIGETLEERESGKTEEVVFRQLKALVSAIGDKW 460
G+ +L+ EKVAHAL + +KVIACIGE L ERE+GKT+EVVFRQ+KA+ I D W
Sbjct: 256 ----GD--QLIGEKVAHALSANVKVIACIGELLSEREAGKTQEVVFRQIKAIADKISD-W 308
Query: 461 ENIVLAYEPVWAIGTGKTATPQQAQDVHHALRNWLSANVSGSVSDAVRIQYRWLGHSC*C 640
+V+AYEPVWAIGTGKTATPQQAQ+VH+ LR WL NVS V+++ RI Y ++ C
Sbjct: 309 SKVVIAYEPVWAIGTGKTATPQQAQEVHNQLRAWLKENVSVDVAESTRIIYGGSVNAKNC 368
Query: 641 *RALHXAKTLDGS*LVGXQSLTXXF 715
R L +DG LVG SL F
Sbjct: 369 -RELAAEGDIDGF-LVGGASLKPEF 391
>SB_12178| Best HMM Match : TIM (HMM E-Value=0)
Length = 203
Score = 146 bits (355), Expect = 1e-35
Identities = 72/161 (44%), Positives = 108/161 (67%), Gaps = 1/161 (0%)
Frame = +2
Query: 155 DNVEVAAQNCWKSPKGAFTGEISPAMIKDVGVNWVILGHSERRTIFGEKDELVAEKVAHA 334
D++ AQNC + GA+TGE+S AM+ +GVN+VI+GHSERR F E +E +A+KV A
Sbjct: 7 DHISTGAQNCHEKASGAYTGEVSAAMLAHLGVNYVIIGHSERREYFNESNEQLAQKVDAA 66
Query: 335 LESGLKVIACIGETLEERESGKTEEVVFRQLK-ALVSAIGDKWENIVLAYEPVWAIGTGK 511
L + L+VI C GE+LE R++ V +Q+K +L ++ +N+V+AYEP+WAIGTG+
Sbjct: 67 LVNNLQVIFCCGESLEIRDADGQNNFVEQQIKESLFHLSEEQMKNVVVAYEPIWAIGTGR 126
Query: 512 TATPQQAQDVHHALRNWLSANVSGSVSDAVRIQYRWLGHSC 634
TA+ +QAQD+H +R+ L++ ++D I Y G SC
Sbjct: 127 TASSEQAQDIHAHIRSVLASKYGDDLADDTTILY---GGSC 164
>SB_2385| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 122
Score = 40.7 bits (91), Expect = 0.001
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = +2
Query: 92 NVEVIVGVPAIYLSYVKTIIPDNVEVAAQNCWKSPKGAFTGE 217
+ EV++ PA+Y +++ +P +A QN +K GAFTGE
Sbjct: 79 DTEVVISPPAVYADFLRANMPAEFGLALQNVYKEGSGAFTGE 120
Score = 36.7 bits (81), Expect = 0.020
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +2
Query: 2 FVVGGNWKMNGDKNQINEIVNNLKKGPLDPNV 97
F VGGNWK+NG + I E++ K LD +V
Sbjct: 5 FFVGGNWKLNGSRASIQELLEAWGKADLDKSV 36
>SB_39600| Best HMM Match : Sushi (HMM E-Value=0)
Length = 1368
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 514 CYSPTGSRCPPCSS*LVVGQCEWECI 591
C+ P+GS CPP L GQC + C+
Sbjct: 283 CF-PSGSDCPPNHKCLCDGQCGYSCV 307
>SB_44183| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 751
Score = 29.1 bits (62), Expect = 4.0
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = -1
Query: 258 TQFTPTSLIIAGEISPVKAPFGDFQQFWAATSTLSGMIVFT*DR*IAGTPTITSTLG 88
T T +II G + + PF W T+T+ + +F + GTP TS G
Sbjct: 254 TWLTYIIMIILGHLVILSVPFFATSTAWTLTNTMHNLCMFLLLHYVKGTPFETSDQG 310
>SB_54138| Best HMM Match : rve (HMM E-Value=6.8e-24)
Length = 2160
Score = 28.7 bits (61), Expect = 5.3
Identities = 28/108 (25%), Positives = 48/108 (44%)
Frame = -2
Query: 416 KQLPQSCQILSLRESHQYRQ*LSSQIQGHEQPFQQQVHLFHQKLFFFQNDQV*PNLLQRL 237
+QL Q Q+ RE Q +Q Q ++ QQQ HL Q+ Q + + Q+
Sbjct: 1533 QQLQQQ-QLQRQRELQQQQQQQQQQQLQRQRELQQQQHLQQQRQLQQQQQYIEQKIRQQQ 1591
Query: 236 *S*RVKFHQ*KLLLETSNSSGLQLRHYQE**SSHKTGK*QEHQQLPQH 93
+ + +Q + + QL+H Q+ + + Q+ Q+LPQH
Sbjct: 1592 LAHQQYTNQQQQQILYQQQQ--QLQHQQQQQQLQQQQQLQQQQRLPQH 1637
>SB_56497| Best HMM Match : Extensin_2 (HMM E-Value=0.16)
Length = 814
Score = 28.7 bits (61), Expect = 5.3
Identities = 28/108 (25%), Positives = 48/108 (44%)
Frame = -2
Query: 416 KQLPQSCQILSLRESHQYRQ*LSSQIQGHEQPFQQQVHLFHQKLFFFQNDQV*PNLLQRL 237
+QL Q Q+ RE Q +Q Q ++ QQQ HL Q+ Q + + Q+
Sbjct: 187 QQLQQQ-QLQRQRELQQQQQQQQQQQLQRQRELQQQQHLQQQRQLQQQQQYIEQKIRQQQ 245
Query: 236 *S*RVKFHQ*KLLLETSNSSGLQLRHYQE**SSHKTGK*QEHQQLPQH 93
+ + +Q + + QL+H Q+ + + Q+ Q+LPQH
Sbjct: 246 LAHQQYTNQQQQQILYQQQQ--QLQHQQQQQQLQQQQQLQQQQRLPQH 291
>SB_16761| Best HMM Match : PDZ (HMM E-Value=1.6e-08)
Length = 889
Score = 28.3 bits (60), Expect = 7.0
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +2
Query: 206 FTGEISPAMIKDVGVNWVILGHSERRTIFGEKD-ELVAEKVAHALESGLKVIACIGETLE 382
+ E+S A+ D IL E++ I + + E+ E++AH +E +V+A LE
Sbjct: 116 YARELSEALAGDDHSKQNILNELEKKLISAQTEKEIALEELAHVIEQRDQVVAERDRALE 175
Query: 383 E 385
E
Sbjct: 176 E 176
>SB_25405| Best HMM Match : DUF343 (HMM E-Value=0.076)
Length = 178
Score = 28.3 bits (60), Expect = 7.0
Identities = 10/42 (23%), Positives = 20/42 (47%)
Frame = +2
Query: 488 VWAIGTGKTATPQQAQDVHHALRNWLSANVSGSVSDAVRIQY 613
VW G+ +T D + +R W +A + +SD + + +
Sbjct: 110 VWMAGSRRTGCENDNVDTNQVMRFWYNAETNELISDEIGVAF 151
>SB_52498| Best HMM Match : Chromate_transp (HMM E-Value=0.17)
Length = 655
Score = 27.9 bits (59), Expect = 9.3
Identities = 19/66 (28%), Positives = 27/66 (40%)
Frame = -3
Query: 424 LSKNNFLSLARFSLFESLTNTGNDFQARFKGMSNLFSNKFIFFTKNCSSFRMTKYNPIYS 245
LS+ +SL + F + T G A + LF F F+ +C KY +
Sbjct: 429 LSEIICISLVLLTKFIAYTLMGLVLSAEYYSHVLLFIFTFAFYVWHCFCSVTAKYQQLLK 488
Query: 244 NVFDHS 227
FDHS
Sbjct: 489 LTFDHS 494
>SB_10556| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1788
Score = 27.9 bits (59), Expect = 9.3
Identities = 17/61 (27%), Positives = 24/61 (39%)
Frame = +2
Query: 458 WENIVLAYEPVWAIGTGKTATPQQAQDVHHALRNWLSANVSGSVSDAVRIQYRWLGHSC* 637
W+N V+ YE I T+ P + + A+R W S V Y W+ S
Sbjct: 1307 WDNAVIPYE----IDCSITSQPWGVRVIKEAMREWESKTCLRFVPRTNETNYVWIYRSLG 1362
Query: 638 C 640
C
Sbjct: 1363 C 1363
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,785,137
Number of Sequences: 59808
Number of extensions: 474923
Number of successful extensions: 1195
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1191
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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