Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0921
(750 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL023828-10|CAA19447.1| 247|Caenorhabditis elegans Hypothetical... 265 2e-71
U23081-1|AAA79846.1| 247|Caenorhabditis elegans triosephosphate... 265 3e-71
U61944-2|AAL56621.1| 705|Caenorhabditis elegans Dynamin related... 32 0.50
U61944-1|AAL56622.1| 712|Caenorhabditis elegans Dynamin related... 32 0.50
AF166274-1|AAD49861.1| 705|Caenorhabditis elegans dynamin-relat... 32 0.50
U13645-6|AAV34802.1| 457|Caenorhabditis elegans Hypothetical pr... 30 2.0
U13645-5|AAM15541.1| 425|Caenorhabditis elegans Hypothetical pr... 30 2.0
U13645-4|AAA20986.2| 529|Caenorhabditis elegans Hypothetical pr... 30 2.0
U58760-4|AAK31462.2| 678|Caenorhabditis elegans Hypothetical pr... 29 2.7
AF077540-8|AAC26310.2| 683|Caenorhabditis elegans Btb and math ... 29 3.5
U97011-5|AAO12451.1| 168|Caenorhabditis elegans Hypothetical pr... 29 4.7
U97011-4|AAQ65202.1| 273|Caenorhabditis elegans Hypothetical pr... 29 4.7
U97011-3|AAQ65201.1| 316|Caenorhabditis elegans Hypothetical pr... 29 4.7
Z82057-3|CAB04860.2| 303|Caenorhabditis elegans Hypothetical pr... 28 6.2
AF047659-15|AAC04426.1| 493|Caenorhabditis elegans Hypothetical... 28 6.2
Z81548-1|CAB04464.1| 1217|Caenorhabditis elegans Hypothetical pr... 28 8.1
AF016418-2|AAK18901.1| 893|Caenorhabditis elegans Hypothetical ... 28 8.1
>AL023828-10|CAA19447.1| 247|Caenorhabditis elegans Hypothetical
protein Y17G7B.7 protein.
Length = 247
Score = 265 bits (650), Expect = 2e-71
Identities = 139/244 (56%), Positives = 171/244 (70%), Gaps = 2/244 (0%)
Frame = +2
Query: 2 FVVGGNWKMNGDKNQINEIVNNLKKGPLDPNVEVIVGVPAIYLSYVKTIIPDNVEVAAQN 181
F VGGNWKMNGD ++ IV L + +V+V+V PA YL+Y K+ + V VAAQN
Sbjct: 5 FFVGGNWKMNGDYASVDGIVTFLNASADNSSVDVVVAPPAPYLAYAKSKLKAGVLVAAQN 64
Query: 182 CWKSPKGAFTGEISPAMIKDVGVNWVILGHSERRTIFGEKDELVAEKVAHALESGLKVIA 361
C+K PKGAFTGEISPAMIKD+G+ WVILGHSERR +FGE D L+AEK HALE+G+KV+
Sbjct: 65 CYKVPKGAFTGEISPAMIKDLGLEWVILGHSERRHVFGESDALIAEKTVHALEAGIKVVF 124
Query: 362 CIGETLEERESGKTEEVVFRQLKALVSAIGDKWENIVLAYEPVWAIGTGKTATPQQAQDV 541
CIGE LEERE+G T++V FRQL+A+V G WENIV+AYEPVWAIGTGKTA+ +QAQ+V
Sbjct: 125 CIGEKLEEREAGHTKDVNFRQLQAIVDK-GVSWENIVIAYEPVWAIGTGKTASGEQAQEV 183
Query: 542 HHALRNWLSANVSGSVSDAVRIQYRWLGHSC*C*RALHXAK--TLDGS*LVGXQSLTXXF 715
H +R +L VS +V+DA RI Y G S A K +DG LVG SL F
Sbjct: 184 HEWIRAFLKEKVSPAVADATRIIY---GGSVTADNAAELGKKPDIDGF-LVGGASLKPDF 239
Query: 716 XKXL 727
K +
Sbjct: 240 VKII 243
>U23081-1|AAA79846.1| 247|Caenorhabditis elegans triosephosphate
isomerase protein.
Length = 247
Score = 265 bits (649), Expect = 3e-71
Identities = 139/244 (56%), Positives = 171/244 (70%), Gaps = 2/244 (0%)
Frame = +2
Query: 2 FVVGGNWKMNGDKNQINEIVNNLKKGPLDPNVEVIVGVPAIYLSYVKTIIPDNVEVAAQN 181
F VGGNWKMNGD ++ IV L + +V+V+V PA YL+Y K+ + V VAAQN
Sbjct: 5 FFVGGNWKMNGDYASVDGIVTFLNASADNSSVDVVVAPPAPYLAYAKSKLKAGVLVAAQN 64
Query: 182 CWKSPKGAFTGEISPAMIKDVGVNWVILGHSERRTIFGEKDELVAEKVAHALESGLKVIA 361
C+K PKGAFTGEISPAMIKD+G+ WVILGHSERR +FGE D L+AEK HALE+G+KV+
Sbjct: 65 CYKVPKGAFTGEISPAMIKDLGLEWVILGHSERRHVFGESDALIAEKTVHALEAGIKVVF 124
Query: 362 CIGETLEERESGKTEEVVFRQLKALVSAIGDKWENIVLAYEPVWAIGTGKTATPQQAQDV 541
CIGE LEERE+G T++V FRQL+A+V G WENIV+AYEPVWAIGTGKTA+ +QAQ+V
Sbjct: 125 CIGEKLEEREAGHTKDVNFRQLQAIVDK-GVSWENIVIAYEPVWAIGTGKTASGEQAQEV 183
Query: 542 HHALRNWLSANVSGSVSDAVRIQYRWLGHSC*C*RALHXAK--TLDGS*LVGXQSLTXXF 715
H +R +L VS +V+DA RI Y G S A K +DG LVG SL F
Sbjct: 184 HEWIRAFLKEKVSPAVADATRIIY---GGSVTADNAADVGKKPDIDGF-LVGGASLKPDF 239
Query: 716 XKXL 727
K +
Sbjct: 240 VKII 243
>U61944-2|AAL56621.1| 705|Caenorhabditis elegans Dynamin related
protein protein1, isoform a protein.
Length = 705
Score = 31.9 bits (69), Expect = 0.50
Identities = 15/42 (35%), Positives = 26/42 (61%)
Frame = +2
Query: 41 NQINEIVNNLKKGPLDPNVEVIVGVPAIYLSYVKTIIPDNVE 166
++INE+V+ + K L P E++ + AI L+Y+ T P+ E
Sbjct: 464 DKINEVVSGVLKERLKPTNELVENLVAIELAYINTKHPEFTE 505
>U61944-1|AAL56622.1| 712|Caenorhabditis elegans Dynamin related
protein protein1, isoform b protein.
Length = 712
Score = 31.9 bits (69), Expect = 0.50
Identities = 15/42 (35%), Positives = 26/42 (61%)
Frame = +2
Query: 41 NQINEIVNNLKKGPLDPNVEVIVGVPAIYLSYVKTIIPDNVE 166
++INE+V+ + K L P E++ + AI L+Y+ T P+ E
Sbjct: 464 DKINEVVSGVLKERLKPTNELVENLVAIELAYINTKHPEFTE 505
>AF166274-1|AAD49861.1| 705|Caenorhabditis elegans dynamin-related
protein protein.
Length = 705
Score = 31.9 bits (69), Expect = 0.50
Identities = 15/42 (35%), Positives = 26/42 (61%)
Frame = +2
Query: 41 NQINEIVNNLKKGPLDPNVEVIVGVPAIYLSYVKTIIPDNVE 166
++INE+V+ + K L P E++ + AI L+Y+ T P+ E
Sbjct: 464 DKINEVVSGVLKERLKPTNELVENLVAIELAYINTKHPEFTE 505
>U13645-6|AAV34802.1| 457|Caenorhabditis elegans Hypothetical
protein C05D10.1c protein.
Length = 457
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = -3
Query: 637 LAAVXEPPVLNTYSVRYTPTHIGRQPVTKSMVDILSLLGSSSLACTNSP 491
L A E +++ +V TPT G T+SMVD+L L ++ T SP
Sbjct: 182 LEAPNEVAHMHSSTVPATPTTPGANLFTQSMVDMLKLNAQNAAHSTGSP 230
>U13645-5|AAM15541.1| 425|Caenorhabditis elegans Hypothetical
protein C05D10.1b protein.
Length = 425
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = -3
Query: 637 LAAVXEPPVLNTYSVRYTPTHIGRQPVTKSMVDILSLLGSSSLACTNSP 491
L A E +++ +V TPT G T+SMVD+L L ++ T SP
Sbjct: 150 LEAPNEVAHMHSSTVPATPTTPGANLFTQSMVDMLKLNAQNAAHSTGSP 198
>U13645-4|AAA20986.2| 529|Caenorhabditis elegans Hypothetical
protein C05D10.1a protein.
Length = 529
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = -3
Query: 637 LAAVXEPPVLNTYSVRYTPTHIGRQPVTKSMVDILSLLGSSSLACTNSP 491
L A E +++ +V TPT G T+SMVD+L L ++ T SP
Sbjct: 254 LEAPNEVAHMHSSTVPATPTTPGANLFTQSMVDMLKLNAQNAAHSTGSP 302
>U58760-4|AAK31462.2| 678|Caenorhabditis elegans Hypothetical
protein C27A2.4 protein.
Length = 678
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -3
Query: 265 KYNPIYSNVFDHSG*NFTSKSSFWRLPTVLGC 170
K N ++S + +H+G + +FWR+P L C
Sbjct: 171 KVNSLFSKLSEHTG-EVINADNFWRIPDTLRC 201
>AF077540-8|AAC26310.2| 683|Caenorhabditis elegans Btb and math
domain containingprotein 47 protein.
Length = 683
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +2
Query: 32 GDKNQINEIVNNLKKGPLDPNVEVIVGVPAIYLSYVKTIIP 154
GD N I+++++ +EV+ G PAI+ + V+ I+P
Sbjct: 47 GDSNYQEHIISDVEPQDFQKFLEVVHGEPAIFEATVQKILP 87
>U97011-5|AAO12451.1| 168|Caenorhabditis elegans Hypothetical
protein F31F7.1b protein.
Length = 168
Score = 28.7 bits (61), Expect = 4.7
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Frame = -3
Query: 406 LSLARFSLFESLTNTGNDF---QARFKGMSN-LFSNKFIFFTK-NCSSFRMTKYNPIYSN 242
L+L R S + L + GN + + R +G+SN LF K NC+ F K +P+Y+
Sbjct: 73 LALQRNSDGKKLYSIGNYYCVPEWRGRGVSNKLFVQVMKHVGKENCTLFGAVKMSPLYAT 132
Query: 241 VFDHSG*NFTSKSSFWRL 188
F NF + FW +
Sbjct: 133 RF-----NFALMNEFWHM 145
>U97011-4|AAQ65202.1| 273|Caenorhabditis elegans Hypothetical
protein F31F7.1c protein.
Length = 273
Score = 28.7 bits (61), Expect = 4.7
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Frame = -3
Query: 406 LSLARFSLFESLTNTGNDF---QARFKGMSN-LFSNKFIFFTK-NCSSFRMTKYNPIYSN 242
L+L R S + L + GN + + R +G+SN LF K NC+ F K +P+Y+
Sbjct: 73 LALQRNSDGKKLYSIGNYYCVPEWRGRGVSNKLFVQVMKHVGKENCTLFGAVKMSPLYAT 132
Query: 241 VFDHSG*NFTSKSSFWRL 188
F NF + FW +
Sbjct: 133 RF-----NFALMNEFWHM 145
>U97011-3|AAQ65201.1| 316|Caenorhabditis elegans Hypothetical
protein F31F7.1a protein.
Length = 316
Score = 28.7 bits (61), Expect = 4.7
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Frame = -3
Query: 406 LSLARFSLFESLTNTGNDF---QARFKGMSN-LFSNKFIFFTK-NCSSFRMTKYNPIYSN 242
L+L R S + L + GN + + R +G+SN LF K NC+ F K +P+Y+
Sbjct: 73 LALQRNSDGKKLYSIGNYYCVPEWRGRGVSNKLFVQVMKHVGKENCTLFGAVKMSPLYAT 132
Query: 241 VFDHSG*NFTSKSSFWRL 188
F NF + FW +
Sbjct: 133 RF-----NFALMNEFWHM 145
>Z82057-3|CAB04860.2| 303|Caenorhabditis elegans Hypothetical
protein T26H8.2 protein.
Length = 303
Score = 28.3 bits (60), Expect = 6.2
Identities = 33/138 (23%), Positives = 52/138 (37%), Gaps = 1/138 (0%)
Frame = -3
Query: 646 SLALAAVXEPPVLNTYSVRYTPTHIGRQPVTKSMVDILSLLGSSSLACTNSPYRFIGKHN 467
S+A P + N++ + T IG + I+S + L S Y +I H
Sbjct: 27 SVAFLIKKLPSLKNSFGMLTTSQSIGDAVHSTIFAFIVSSMCFFDLKFLKS-YSYIVGHI 85
Query: 466 IFPFVTNGRY*SF*LSKNNFLSLARFSLFESLTNTGNDFQARFKGMSNLFSNKFIFFTKN 287
+ Y +S N F S+ +ES+ N+ N Q + F F+ N
Sbjct: 86 LIITYEVSTYSHLCISLNRFCSIVAPISYESIFNSSNTKQLIIISWALAIFPSFYFYVYN 145
Query: 286 -CSSFRMTKYNPIYSNVF 236
C F YN ++S F
Sbjct: 146 DCKLF----YNEVFSAFF 159
>AF047659-15|AAC04426.1| 493|Caenorhabditis elegans Hypothetical
protein K07H8.1 protein.
Length = 493
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +3
Query: 378 SKRENLARLRKLFLDN*KL*YRPLVTNGK-ILCLPMNLYGLLV 503
+K+ N+ +L + LDN + + P + + ILC +NLYG L+
Sbjct: 112 AKQSNIEKLINIVLDNRSVGFPPSSDSPQFILCRELNLYGNLL 154
>Z81548-1|CAB04464.1| 1217|Caenorhabditis elegans Hypothetical
protein F54F12.1 protein.
Length = 1217
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/63 (25%), Positives = 31/63 (49%)
Frame = +2
Query: 389 ESGKTEEVVFRQLKALVSAIGDKWENIVLAYEPVWAIGTGKTATPQQAQDVHHALRNWLS 568
+S ++ + + LKAL IG + L+Y+ + + +GK + Q V+H NW+
Sbjct: 181 QSIQSSQSLLPVLKALRKVIGSHVNGLELSYKYIAGLPSGKLDLEELIQAVYH---NWIK 237
Query: 569 ANV 577
+
Sbjct: 238 NRI 240
>AF016418-2|AAK18901.1| 893|Caenorhabditis elegans Hypothetical
protein C49G7.7 protein.
Length = 893
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +2
Query: 20 WKMNGDKNQINEIVNNLKKGPLDPNVEVI 106
W++NGD+ ++EI N+ LD +V VI
Sbjct: 83 WEINGDRETLSEIQNHNSYRDLDMDVLVI 111
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,412,246
Number of Sequences: 27780
Number of extensions: 367492
Number of successful extensions: 1183
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1181
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -