Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0921
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...   321   4e-90
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    24   1.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.8  
DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    23   3.1  
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    23   3.1  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    23   3.1  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   7.1  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   7.1  

>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score =  321 bits (789), Expect = 4e-90
 Identities = 159/239 (66%), Positives = 186/239 (77%), Gaps = 1/239 (0%)
 Frame = +2

Query: 2   FVVGGNWKMNGDKNQINEIVNNLKKGPLDPNVEVIVGVPAIYLSYVKTIIPDNVEVAAQN 181
           F VGGNWKMNG K++IN+IV  LKKGPLD NVEV+VGVP+IYL+Y K I+P+N+ +A QN
Sbjct: 5   FFVGGNWKMNGTKSEINDIVGFLKKGPLDSNVEVVVGVPSIYLTYAKNILPNNISIAGQN 64

Query: 182 CWKSPKGAFTGEISPAMIKDVGVNWVILGHSERRTIFGEKDELVAEKVAHALESGLKVIA 361
            +K  KGAFTGEISPAM+ D G+ WVILGHSERR IFGE DEL+AEKVAHALESGLKVIA
Sbjct: 65  TYKVAKGAFTGEISPAMLLDNGIPWVILGHSERRNIFGENDELIAEKVAHALESGLKVIA 124

Query: 362 CIGETLEERESGKTEEVVFRQLKALVSAIGDKWENIVLAYEPVWAIGTGKTATPQQAQDV 541
           CIGE LEERE+GKT+EVVFRQ KA+ + I + W+N+V+AYEPVWAIGTGKTATPQQAQ+V
Sbjct: 125 CIGEKLEEREAGKTDEVVFRQTKAIANKI-NSWDNVVVAYEPVWAIGTGKTATPQQAQEV 183

Query: 542 HHALRNWLSANVSGSVSDAVRIQYRWLGHSC*C*RALHXAKTLD-GS*LVGXQSLTXXF 715
           H  LRNW S NV+ +V++ VRI Y   G S     A   AK  D    LVG  SL   F
Sbjct: 184 HEKLRNWFSKNVNQTVAETVRIIY---GGSVTAGNAKDLAKEKDIDGFLVGGASLKPDF 239


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = +2

Query: 2   FVVGGNWKMNGDKNQINEIVNNLKKGP-LDPNVEVIVGVPAIYLSYVKTIIP 154
           F+  G W + G   + NEI  N    P +D    VI+    +Y  +   I+P
Sbjct: 191 FITNGEWDLLGVPGKRNEIYYNCCPEPYIDITFVVIIRRRTLYY-FFNLIVP 241


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 383 LRESHQYRQ*LSSQIQGHEQPFQQQ 309
           L+  H + Q  S+ +Q H +P+QQQ
Sbjct: 144 LQNHHHHLQ--STAVQDHHRPYQQQ 166


>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +2

Query: 398 KTEEVVFRQLKALVSAIGDKWENIVLAYEP 487
           K  EV+ + +K LV    + W+++   Y+P
Sbjct: 82  KQREVIKKVIKFLVENKPELWDSLANKYDP 111


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +2

Query: 398 KTEEVVFRQLKALVSAIGDKWENIVLAYEP 487
           K  EV+ + +K LV    + W+++   Y+P
Sbjct: 82  KQREVIKKVIKFLVENKPELWDSLANKYDP 111


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +2

Query: 398 KTEEVVFRQLKALVSAIGDKWENIVLAYEP 487
           K  EV+ + +K LV    + W+++   Y+P
Sbjct: 82  KQREVIKKVIKFLVENKPELWDSLANKYDP 111


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 6/26 (23%), Positives = 15/26 (57%)
 Frame = +2

Query: 104 IVGVPAIYLSYVKTIIPDNVEVAAQN 181
           ++G P+  + Y   +IP+   ++ +N
Sbjct: 848 VIGTPSTGMMYKPFLIPEQTSISHEN 873


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = -2

Query: 413 QLPQSCQILSLRESHQYRQ*LSSQIQGHEQPFQQQ 309
           ++ +  Q +  ++ HQ +Q  +  +   +QP QQQ
Sbjct: 410 KMTEQQQQMQAQQQHQQQQQQTQHVINAQQPQQQQ 444


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,652
Number of Sequences: 438
Number of extensions: 4523
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)