Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0918
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G7.07 |arb2||argonaute binding protein 2|Schizosaccharomyc...    27   3.1  
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ...    26   5.4  
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc...    25   7.2  
SPBC725.13c |psf2|dre13, bsh3|GINS complex subunit Psf2|Schizosa...    25   9.5  

>SPAC13G7.07 |arb2||argonaute binding protein 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 266

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 413 YVTDNWGTDANGFKLVITAVKDP 481
           Y T NW T+ NG  ++I ++  P
Sbjct: 94  YATRNWQTNENGIVIIIQSMSHP 116


>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
           Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = +1

Query: 115 YMESLCXDHFLQRQYRKLDGGVLWSR*REESGLHRDFPD 231
           Y E L  DH      R ++ GV W R R+      +F D
Sbjct: 328 YAELLLLDHQWSNLIRLINRGVRWFRGRKSESFWDEFDD 366


>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1063

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -3

Query: 615 PXLSGHRATVSSSEPSAQWSTPSQVRSALTQNSL 514
           P +S +   ++ S P+AQ S P Q + A   NS+
Sbjct: 754 PSVSSNVRPINGSIPNAQPSVPGQAQPAAKANSV 787


>SPBC725.13c |psf2|dre13, bsh3|GINS complex subunit
           Psf2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 183

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -2

Query: 229 LESHGAVQIPLVTLTTGHLRLTFCID 152
           LE+    ++P   L T HL L FC D
Sbjct: 89  LENETFSELPFRWLETAHLLLNFCAD 114


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,467,813
Number of Sequences: 5004
Number of extensions: 47877
Number of successful extensions: 103
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)