Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0918
         (650 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0437 - 3347960-3349246                                           29   2.4  
02_05_0704 - 31064996-31065214,31065306-31065466,31065583-310656...    29   4.2  
12_01_0328 + 2535049-2535213,2536611-2537777                           28   7.4  
11_01_0321 + 2415799-2415972,2418060-2418351,2418757-2419610           28   7.4  
11_01_0198 - 1556215-1556298,1556412-1556580,1556666-1556921,155...    28   7.4  
07_01_0322 - 2258067-2258519,2258620-2258781,2258896-2259159,225...    28   7.4  
02_04_0271 + 21445113-21445865,21446727-21446788,21446927-214470...    27   9.8  

>11_01_0437 - 3347960-3349246
          Length = 428

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
 Frame = -3

Query: 627 LEPLPXLSGHRATVSSSEPSAQWSTPSQVRSALTQNSLCLHLNSL--QPCLGSLTAVMTS 454
           + P P  +G  +  +SS  SA   TPS   S     S  L L+S+   P    + A+  S
Sbjct: 1   MPPSPSAAGAASPSNSSAASASDPTPSWWESVSQARSRILALSSILPAPADSDVAALADS 60

Query: 453 LKPFASVPQLSVTYFRVTKLLR 388
            +P  ++ + S  Y  ++  LR
Sbjct: 61  DRPARALLRSSAAYVALSAALR 82


>02_05_0704 -
           31064996-31065214,31065306-31065466,31065583-31065660,
           31066560-31066651,31066775-31066833,31066924-31067010,
           31067118-31067214,31067311-31067495,31067593-31067665,
           31067725-31067805,31067948-31068048,31068133-31068246,
           31068391-31068488,31069789-31069915
          Length = 523

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +2

Query: 236 SILQRFMLHFDLLQLDCNDHLYVYDGAHATAPPKADLSCRNTKQQV 373
           SI  RF + F +  +    +L    GA+  APPK    CR  +  +
Sbjct: 209 SIFDRFAVLFTIPIVWLYAYLLTVGGAYRNAPPKTQFHCRTDRSGI 254


>12_01_0328 + 2535049-2535213,2536611-2537777
          Length = 443

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -1

Query: 218 RCSPDSSRYLDHRTPPSN 165
           RCS D+SR L  RTPP++
Sbjct: 127 RCSNDTSRELSFRTPPAS 144


>11_01_0321 + 2415799-2415972,2418060-2418351,2418757-2419610
          Length = 439

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -1

Query: 218 RCSPDSSRYLDHRTPPSN 165
           RCS D+SR L  RTPP++
Sbjct: 130 RCSNDTSRELSFRTPPAS 147


>11_01_0198 -
           1556215-1556298,1556412-1556580,1556666-1556921,
           1557000-1557114,1557191-1557441,1557565-1557892,
           1558197-1558358,1558846-1558985,1559325-1559436,
           1560028-1560200,1560411-1560506,1560687-1560930
          Length = 709

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -2

Query: 151 VEESGPCIVIPYNRTCFSRQKCS*RRRISLEGELAV 44
           V+E+ P IVI     CFS+Q+   ++ +S +G L V
Sbjct: 609 VDENLPIIVIATRDACFSKQQSVIQQLLSRKGRLIV 644


>07_01_0322 -
           2258067-2258519,2258620-2258781,2258896-2259159,
           2259196-2259294,2259723-2260131,2260223-2260350,
           2261115-2261181,2262766-2262838,2262911-2263130
          Length = 624

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 403 HEVAAREQGSDLLLGVPAR*VSLRRRG 323
           H++ A   G D+++G P R + L RRG
Sbjct: 206 HQMRALNYGVDVVVGTPGRIIDLLRRG 232


>02_04_0271 +
           21445113-21445865,21446727-21446788,21446927-21447027,
           21447165-21447248,21448054-21448058,21448193-21448267,
           21448339-21448416,21448896-21448952,21449351-21449421,
           21449529-21449628,21449758-21449862,21450004-21450066,
           21450144-21450266,21450371-21450514,21450598-21450672
          Length = 631

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 362 WCSGTISQPSAARWHAPRRTRRDGHC 285
           W   T S  S++  H PRR R + HC
Sbjct: 45  WEGPTSSSSSSSDEHEPRRIRAEAHC 70


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,676,768
Number of Sequences: 37544
Number of extensions: 397807
Number of successful extensions: 1325
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1324
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)