Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0918
(650 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_18810| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.001
SB_43823| Best HMM Match : MAM (HMM E-Value=0) 41 0.001
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 40 0.001
SB_45709| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.009
SB_56441| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.009
SB_50311| Best HMM Match : Ldl_recept_a (HMM E-Value=3.4e-20) 37 0.012
SB_4238| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.012
SB_51898| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.016
SB_27746| Best HMM Match : MAM (HMM E-Value=1.4013e-45) 37 0.016
SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32) 36 0.022
SB_17635| Best HMM Match : CUB (HMM E-Value=0) 36 0.029
SB_29580| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-38) 36 0.038
SB_33423| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-22) 36 0.038
SB_21487| Best HMM Match : MAM (HMM E-Value=0) 35 0.050
SB_23898| Best HMM Match : Ldl_recept_a (HMM E-Value=1.4013e-45) 35 0.050
SB_5319| Best HMM Match : Ldl_recept_a (HMM E-Value=7.56701e-44) 35 0.050
SB_13477| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 35 0.066
SB_13199| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.066
SB_35576| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.087
SB_19614| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.12
SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26) 34 0.12
SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25) 34 0.12
SB_26126| Best HMM Match : Ldl_recept_b (HMM E-Value=3e-24) 34 0.12
SB_6273| Best HMM Match : MAM (HMM E-Value=0) 33 0.15
SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34) 33 0.20
SB_40871| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.27
SB_35350| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.27
SB_50657| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.47
SB_10970| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.47
SB_2014| Best HMM Match : MAM (HMM E-Value=0) 32 0.47
SB_31927| Best HMM Match : Ldl_recept_a (HMM E-Value=2.3e-27) 32 0.47
SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 0.53
SB_20531| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.62
SB_55149| Best HMM Match : Ldl_recept_a (HMM E-Value=2.6e-23) 31 0.62
SB_53569| Best HMM Match : EGF_CA (HMM E-Value=0) 30 1.4
SB_47409| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-17) 30 1.4
SB_22727| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_18178| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_11478| Best HMM Match : Toxin_11 (HMM E-Value=1.8) 29 2.5
SB_28040| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_17897| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-14) 29 2.5
SB_8478| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_43556| Best HMM Match : Ldl_recept_a (HMM E-Value=2.7e-11) 29 3.3
SB_1976| Best HMM Match : FYVE (HMM E-Value=0.6) 29 3.3
SB_48544| Best HMM Match : TSP_1 (HMM E-Value=3.1e-32) 29 4.3
SB_38935| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_17568| Best HMM Match : Ldl_recept_a (HMM E-Value=0.04) 29 4.3
SB_817| Best HMM Match : Peptidase_S28 (HMM E-Value=0) 29 4.3
SB_11608| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
>SB_18810| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 105
Score = 40.7 bits (91), Expect = 0.001
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +2
Query: 497 EFRCKQREFCVSADLTCDGVDHCADGSDEDTVALCPES 610
+F+C+ + C+ + CDGV C D SDED CP S
Sbjct: 10 QFQCRASKICIKSSFVCDGVPDCNDHSDEDD---CPNS 44
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = +2
Query: 479 PKHGC--KEFRCKQREFCVSADLTCDGVDHCADGSDE 583
P C ++ C + C++ L CDG C+D SDE
Sbjct: 42 PNSDCNLEQIYCPVSQKCLNRTLQCDGKPDCSDYSDE 78
>SB_43823| Best HMM Match : MAM (HMM E-Value=0)
Length = 1724
Score = 40.7 bits (91), Expect = 0.001
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +2
Query: 497 EFRCKQREFCVSADLTCDGVDHCADGSDEDTVALCPES 610
+F+C+ + C+ + CDGV C D SDED CP S
Sbjct: 1307 QFQCRASKICIKSSFVCDGVPDCNDHSDEDD---CPNS 1341
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/47 (34%), Positives = 18/47 (38%)
Frame = +2
Query: 497 EFRCKQREFCVSADLTCDGVDHCADGSDEDTVALCPESXGSGSSSTW 637
E RCK CV CD D C DG+DED + W
Sbjct: 124 EVRCKNSGHCVQQQQVCDFTDDCGDGTDEDPTLCASRTANCNFEKDW 170
Score = 33.5 bits (73), Expect = 0.15
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 497 EFRCKQREFCVSADLTCDGVDHCADGSDEDTVA 595
EF C + + C++ CDG C DG DE A
Sbjct: 342 EFYCSKDDRCINIFWKCDGESDCTDGEDEQGCA 374
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = +2
Query: 479 PKHGC--KEFRCKQREFCVSADLTCDGVDHCADGSDE 583
P C ++ C + C++ L CDG C+D SDE
Sbjct: 1339 PNSDCNLEQIYCPVSQKCLNRTLQCDGKPDCSDYSDE 1375
>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 3891
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/48 (39%), Positives = 23/48 (47%)
Frame = +2
Query: 464 TAVKDPKHGCKEFRCKQREFCVSADLTCDGVDHCADGSDEDTVALCPE 607
T + P +F CK C+S CDG + C D SDED A C E
Sbjct: 818 TVIPTPPCSAGKFTCKNGH-CISLRWKCDGENDCVDNSDEDEYAGCAE 864
Score = 36.7 bits (81), Expect = 0.016
Identities = 18/38 (47%), Positives = 22/38 (57%)
Frame = +2
Query: 476 DPKHGCKEFRCKQREFCVSADLTCDGVDHCADGSDEDT 589
DPK EF+C C++ CDG+ CADGSDE T
Sbjct: 88 DPK---LEFQCANGR-CINKKWRCDGMKDCADGSDEST 121
Score = 36.3 bits (80), Expect = 0.022
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +2
Query: 497 EFRCKQREFCVSADLTCDGVDHCADGSDEDTVALC 601
E+ C+ CV CDG + C DGSDE C
Sbjct: 2418 EYSCRSTSRCVPLAFVCDGENDCGDGSDESEEQNC 2452
Score = 35.9 bits (79), Expect = 0.029
Identities = 18/37 (48%), Positives = 18/37 (48%), Gaps = 6/37 (16%)
Frame = +2
Query: 491 CKEFRCKQREF------CVSADLTCDGVDHCADGSDE 583
C E C EF CVS D CDG D C D SDE
Sbjct: 2243 CPEVTCPAHEFTCPNGRCVSYDFLCDGEDDCGDFSDE 2279
Score = 35.9 bits (79), Expect = 0.029
Identities = 17/31 (54%), Positives = 18/31 (58%)
Frame = +2
Query: 497 EFRCKQREFCVSADLTCDGVDHCADGSDEDT 589
EFRC E CV A CDG + C D SDE T
Sbjct: 2332 EFRCTSGE-CVPASWRCDGDNDCTDKSDEPT 2361
Score = 35.9 bits (79), Expect = 0.029
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +2
Query: 479 PKHGCK-EFRCKQREFCVSADLTCDGVDHCADGSDE 583
PK K ++RC C+SA CD V+ C DGSDE
Sbjct: 3165 PKQCAKHQYRCASGR-CISASWVCDHVNDCGDGSDE 3199
Score = 35.9 bits (79), Expect = 0.029
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = +2
Query: 500 FRCKQREFCVSADLTCDGVDHCADGSDEDTVALCP 604
FRC + C+ CDGV HC D SDE CP
Sbjct: 3292 FRCDNNK-CIPKWNVCDGVYHCTDKSDEAPYRSCP 3325
Score = 35.5 bits (78), Expect = 0.038
Identities = 15/28 (53%), Positives = 16/28 (57%)
Frame = +2
Query: 500 FRCKQREFCVSADLTCDGVDHCADGSDE 583
FRC + C D CDG D C DGSDE
Sbjct: 915 FRCANGQ-CKPRDWVCDGFDDCGDGSDE 941
Score = 35.1 bits (77), Expect = 0.050
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Frame = +2
Query: 464 TAVKDPKHGCK--EFRCKQREFCVSADLTCDGVDHCADGSDE 583
T P GC EF+C+ C+ CD D C D SDE
Sbjct: 1038 TKATRPTFGCHSTEFQCETSSRCIPLRFVCDADDDCGDRSDE 1079
Score = 35.1 bits (77), Expect = 0.050
Identities = 15/28 (53%), Positives = 16/28 (57%)
Frame = +2
Query: 500 FRCKQREFCVSADLTCDGVDHCADGSDE 583
FRC CV CDG+D C DGSDE
Sbjct: 3012 FRCDNFR-CVYRSRVCDGIDDCRDGSDE 3038
Score = 34.7 bits (76), Expect = 0.066
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +2
Query: 500 FRCKQREFCVSADLTCDGVDHCADGSDEDTVALCPESXGSG 622
F+C C++ CDG CADGSDE L + G+G
Sbjct: 2501 FKCTSGH-CIANSSVCDGDTDCADGSDEKDCDLGTSTCGAG 2540
Score = 34.3 bits (75), Expect = 0.087
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +2
Query: 497 EFRCKQREFCVSADLTCDGVDHCADGSDE 583
+FRCK C++ + CD D C DGSDE
Sbjct: 2461 QFRCKTGT-CITREWRCDHQDDCGDGSDE 2488
Score = 33.9 bits (74), Expect = 0.12
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +2
Query: 497 EFRCKQREFCVSADLTCDGVDHCADGSDEDTV 592
EF C+ + CV CDG + C DGSDE ++
Sbjct: 2172 EFACESGQ-CVRKSFVCDGDNDCHDGSDESSL 2202
Score = 33.9 bits (74), Expect = 0.12
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +2
Query: 497 EFRCKQREFCVSADLTCDGVDHCADGSDE 583
+ +C + C+ + CDG D C DG DE
Sbjct: 2291 QVKCGSKNLCIPSSWLCDGSDDCGDGWDE 2319
Score = 33.9 bits (74), Expect = 0.12
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +2
Query: 497 EFRCKQREFCVSADLTCDGVDHCADGSDE 583
+FRC C+S D CDG + C D SDE
Sbjct: 3050 QFRCPSGR-CISRDWLCDGDNDCGDSSDE 3077
Score = 33.5 bits (73), Expect = 0.15
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 503 RCKQREFCVSADLTCDGVDHCADGSDEDT 589
RC C+ ++ CDG C DGSDE++
Sbjct: 3092 RCATGRRCIPSEWRCDGESDCEDGSDENS 3120
Score = 33.1 bits (72), Expect = 0.20
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +2
Query: 497 EFRCKQREFCVSADLTCDGVDHCADGSDEDTV 592
+F C C+S L CDG + C D SDE T+
Sbjct: 2374 QFACDNGR-CISTRLLCDGDNDCGDNSDETTL 2404
Score = 32.7 bits (71), Expect = 0.27
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = +2
Query: 491 CK--EFRCKQREFCVSADLTCDGVDHCADGSDEDTVALCPESXGS 619
CK EF C C+ CDG + C D SDE L ES G+
Sbjct: 1087 CKPFEFACANGRHCIQRKWICDGENDCGDRSDEVDCGL--ESCGN 1129
Score = 32.7 bits (71), Expect = 0.27
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +2
Query: 500 FRCKQREFCVSADLTCDGVDHCADGSDE 583
FRC C+ CDG C DGSDE
Sbjct: 3133 FRCYSDRRCIPNQWKCDGESDCNDGSDE 3160
Score = 32.3 bits (70), Expect = 0.35
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +2
Query: 497 EFRCKQREFCVSADLTCDGVDHCADGSDE 583
+F C C+S CDG D C DGSDE
Sbjct: 2930 DFMCDNYR-CISRLWRCDGEDDCGDGSDE 2957
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +2
Query: 488 GCKEFRCKQREFCVSADLTCDGVDHCADGSDE 583
G +RC C++ CDG C D SDE
Sbjct: 1128 GNDRWRCSNTSRCIAKSQVCDGRVDCPDASDE 1159
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Frame = +2
Query: 479 PKHGCKE--FRCKQREFCVSADLTCDGVDHCADGSDE 583
P CK ++C C+S CDG+ C G DE
Sbjct: 2962 PVRVCKPGTYQCADNRKCISVLEVCDGIPSCPAGDDE 2998
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +2
Query: 500 FRCKQREFCVSADLTCDGVDHCADGSDEDTVALCPE 607
F C C++A CD + C D SDE A CPE
Sbjct: 2214 FSCNNGR-CINAKWVCDRENDCGDNSDE---ARCPE 2245
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +2
Query: 497 EFRCKQREFCVSADLTCDGVDHCADGSDE 583
+F+C R CV CD D C D SDE
Sbjct: 3334 QFKCLNRR-CVPVRAVCDSNDDCGDISDE 3361
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 497 EFRCKQREFCVSADLTCDGVDHCADGSDE 583
+F C C++ CDG+ CAD SDE
Sbjct: 3211 QFSCDDG-LCIARAWKCDGMMDCADASDE 3238
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/34 (32%), Positives = 15/34 (44%)
Frame = +2
Query: 497 EFRCKQREFCVSADLTCDGVDHCADGSDEDTVAL 598
E+ C C+ CDG + C D DE + L
Sbjct: 131 EWHCIGTSRCIPLSRVCDGTNDCGDNYDEGSHCL 164
>SB_45709| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1112
Score = 37.5 bits (83), Expect = 0.009
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +2
Query: 488 GCK--EFRCKQREFCVSADLTCDGVDHCADGSDEDTVALCP 604
GC EF C ++ C+ CDG D+C DGSDE +CP
Sbjct: 509 GCSSDEFTCTNQK-CIPLPQKCDGTDNCGDGSDE---KMCP 545
Score = 33.9 bits (74), Expect = 0.12
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = +2
Query: 485 HGCKEFRCKQREFCVSADLTCDGVDHCADGSDEDTVALCP 604
H C+ RC +E+ CDG+D C D SDED CP
Sbjct: 306 HTCRNGRCVLKEWL------CDGMDDCGDSSDEDN---CP 336
Score = 33.1 bits (72), Expect = 0.20
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = +2
Query: 500 FRCKQREFCVSADLTCDGVDHCADGSDEDTVA 595
FRC C++ CD HC G DE A
Sbjct: 577 FRCGSSTICIANSKVCDATPHCPHGEDERNCA 608
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +2
Query: 524 CVSADLTCDGVDHCADGSDEDTVALCPESXGSGSSS 631
C+ A CDG C D SDE CP + G +S
Sbjct: 142 CIKASWLCDGASDCQDNSDEMN---CPLTLAPGRNS 174
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Frame = +2
Query: 479 PKHGC--KEFRCKQREFCVSADLTCDGVDHCADGSDE 583
P + C +F C + CV CDG + C D SDE
Sbjct: 339 PPYTCPPSDFTCANSQ-CVPNSFRCDGENDCGDRSDE 374
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/43 (37%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Frame = +2
Query: 461 ITAVKDPKHGCK--EFRCKQREFCVSADLTCDGVDHCADGSDE 583
+T P C+ E C CV CDG C DGSDE
Sbjct: 460 VTRPTPPPVKCRKNERMCADGNGCVHRRWICDGERDCLDGSDE 502
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/29 (41%), Positives = 13/29 (44%)
Frame = +2
Query: 497 EFRCKQREFCVSADLTCDGVDHCADGSDE 583
EF C C+ CD C DGSDE
Sbjct: 426 EFTCAFSGRCIPGRFRCDHRSDCLDGSDE 454
>SB_56441| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1717
Score = 37.5 bits (83), Expect = 0.009
Identities = 17/41 (41%), Positives = 19/41 (46%)
Frame = +2
Query: 488 GCKEFRCKQREFCVSADLTCDGVDHCADGSDEDTVALCPES 610
G EF+C E C+ CDG C DG DE CP S
Sbjct: 697 GLHEFQCSSGE-CIEVATFCDGKKDCGDGFDETHCGSCPVS 736
Score = 31.5 bits (68), Expect = 0.62
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = +2
Query: 455 LVITAVKDPKHGCKE--FRCKQREFCVSADLTCDGV-DHCADGSDE 583
L + +P + C + F C E CV+ C+G+ D C DGSDE
Sbjct: 647 LCTPVIAEPGYKCLDHLFTCNNGE-CVTKTSRCNGMRDSCVDGSDE 691
>SB_50311| Best HMM Match : Ldl_recept_a (HMM E-Value=3.4e-20)
Length = 772
Score = 37.1 bits (82), Expect = 0.012
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +2
Query: 479 PKHGCK--EFRCKQREFCVSADLTCDGVDHCADGSDEDTVALCPES 610
P H C EF+C + C+ +L CDG C DGSDE T CP +
Sbjct: 87 PGHSCGSGEFQCDNGK-CIRKNLYCDGDFACVDGSDE-TRCECPSN 130
>SB_4238| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1288
Score = 37.1 bits (82), Expect = 0.012
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +2
Query: 497 EFRCKQREFCVSADLTCDGVDHCADGSDE 583
EF C + C++A CDG D C D SDE
Sbjct: 590 EFTCVNTQKCIAATWKCDGEDDCGDNSDE 618
Score = 32.7 bits (71), Expect = 0.27
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = +2
Query: 485 HGCK--EFRCKQREFCVSADLTCDGVDHCADGSDEDTVALCPESXGSGSSSTW 637
H C+ EF C + C+ + CDG CAD SDE CP S SS +
Sbjct: 704 HTCRPNEFTCADKR-CILSRWRCDGDRDCADNSDEIN---CPNSSQYCKSSEY 752
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Frame = +2
Query: 479 PKHGCK---EFRCKQREFCVSADLTCDGVDHCADGSDE 583
PK C +FRC C+ CD D C DGSDE
Sbjct: 622 PKATCNPDTQFRCTNGR-CIPRRWVCDKDDDCHDGSDE 658
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 6/42 (14%)
Frame = +2
Query: 476 DPKHGCKEFRCKQREF------CVSADLTCDGVDHCADGSDE 583
D ++ C C + E CV CD D C DG+DE
Sbjct: 657 DERNSCATMTCSENEITCGNGICVVKRWVCDQDDDCGDGTDE 698
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Frame = +2
Query: 479 PKHGCK--EFRCKQREFCVSADLTCDGVDHCADGSDE 583
P CK EF+C + C+ CDG C + +DE
Sbjct: 785 PPSICKDGEFQCGSSKQCIPESKVCDGSVDCTNSADE 821
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = +2
Query: 491 CK--EFRCKQREFCVSADLTCDGVDHCADGSDEDTVALCPES 610
CK E++C E C+ CDG C + SDE+ P S
Sbjct: 747 CKSSEYQCSTGE-CIHKSWVCDGEFDCLNKSDENNCPTKPPS 787
>SB_51898| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1712
Score = 36.7 bits (81), Expect = 0.016
Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +2
Query: 491 CKE--FRCKQREFCVSADLTCDGVDHCADGSDEDTVALC 601
CKE FRC + C+ D CD +C DGSDE A C
Sbjct: 1346 CKENQFRCDNGQ-CIDGDPRCDKYKNCTDGSDELGCATC 1383
Score = 33.1 bits (72), Expect = 0.20
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +2
Query: 500 FRCKQREFCVSADLTCDGVDHCADGSDEDTVALCPESXGSGSSS 631
FRC + C+SA CD +D C D SDE C G+G+++
Sbjct: 1388 FRCNTGK-CISARWQCDQLDDCGDNSDE---IGCDTPPGNGTNA 1427
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +2
Query: 515 REFCVSADLTCDGVDHCADGSDEDTVALCPES 610
+ C+ CDG+ C D SDE+ C E+
Sbjct: 1318 KAICIPKMWRCDGMLDCTDKSDEEDCPPCKEN 1349
>SB_27746| Best HMM Match : MAM (HMM E-Value=1.4013e-45)
Length = 622
Score = 36.7 bits (81), Expect = 0.016
Identities = 20/46 (43%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +2
Query: 479 PKHGC--KEFRCKQREFCVSADLTCDGVDHCADGSDEDTVALCPES 610
P H C EF C+ + CV L CDG C DGSDE + CP +
Sbjct: 179 PGHECLEDEFGCENGQ-CVKRGLLCDGDKACLDGSDEKHCS-CPSN 222
>SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32)
Length = 1039
Score = 36.3 bits (80), Expect = 0.022
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Frame = +2
Query: 482 KHGCKE--FRCKQREFCVSADLTCDGVDHCADGSDEDT--VALCPESXGSGS 625
K GC E F C++ C++ CD V C DGSDE ++ E G GS
Sbjct: 898 KGGCAEGQFACEKTNKCLAKSSLCDTVHDCDDGSDEKNCPISRRDEEFGCGS 949
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Frame = +2
Query: 473 KDPKHGC--KEFRCKQREFCVSADLTCDGVDHCADGSDE 583
+D + GC +F C C+ CD + C D DE
Sbjct: 941 RDEEFGCGSDKFTCDNGAKCLPLTWLCDSITDCMDSKDE 979
>SB_17635| Best HMM Match : CUB (HMM E-Value=0)
Length = 630
Score = 35.9 bits (79), Expect = 0.029
Identities = 36/140 (25%), Positives = 57/140 (40%), Gaps = 14/140 (10%)
Frame = +2
Query: 209 DCTVTFQTHS--ILQRFMLHFDLLQLD---CND-HLYVYDGAHATAPPKADLSCRNTKQQ 370
+CT Q + I+ FD+ L+ C + ++ YDG + K N+K+
Sbjct: 316 ECTWKIQAENGEIVSVIFNEFDVGTLEDSNCEENYVEFYDGIDENS--KVITRYCNSKKV 373
Query: 371 VGALFTRSNFVTLKYVTDNWGTDANGFKLVITAVKDPKH--GCKE------FRCKQREFC 526
+ + + F+ +K +W +GF T V H C E F+C +
Sbjct: 374 IRDVRSTGKFMFVKL---HWEATNDGFLATYTTVDPSNHLDKCSESANELLFKCDNDNY- 429
Query: 527 VSADLTCDGVDHCADGSDED 586
+ CDG D C D SDED
Sbjct: 430 IQCQWKCDGTDDCGDHSDED 449
>SB_29580| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-38)
Length = 130
Score = 35.5 bits (78), Expect = 0.038
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = +2
Query: 479 PKHGCKEFRCKQREFCVSADLTCDGVDHCADGSDE 583
PK + RC CV CDG+ CADGSDE
Sbjct: 92 PKCRISQRRCDNGSGCVDRMKICDGMRDCADGSDE 126
Score = 31.9 bits (69), Expect = 0.47
Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Frame = +2
Query: 485 HGCK--EFRCKQREFCVSADLTCDGVDHCADGSDE 583
H C EFRC C++ CD D C D SDE
Sbjct: 2 HTCSATEFRCNNGR-CITRAFRCDDEDDCLDNSDE 35
Score = 29.1 bits (62), Expect = 3.3
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = +2
Query: 497 EFRCKQREFCVSADLTCDGVDHCADGSDE 583
+F+C C+ CDG C+ G DE
Sbjct: 47 QFQCGTSRKCIRKSKICDGKSDCSGGEDE 75
>SB_33423| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-22)
Length = 133
Score = 35.5 bits (78), Expect = 0.038
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +2
Query: 482 KHGCKE--FRCKQREFCVSADLTCDGVDHCADGSDEDTVALCPES 610
K GC E F C++ C++ CD V C DGSDE CP S
Sbjct: 85 KGGCAEGQFACEKTNKCLAKSSLCDTVHDCDDGSDEKN---CPIS 126
>SB_21487| Best HMM Match : MAM (HMM E-Value=0)
Length = 874
Score = 35.1 bits (77), Expect = 0.050
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +2
Query: 494 KEFRCKQREFCVSADLTCDGVDHCADGSDED 586
+ ++C+ E C+S DL CD C DGSDE+
Sbjct: 707 ESYKCRSGE-CISLDLLCDFNKDCLDGSDEE 736
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +2
Query: 524 CVSADLTCDGVDHCADGSDE 583
C+S CD VD C DG DE
Sbjct: 497 CISHGQLCDFVDDCGDGWDE 516
>SB_23898| Best HMM Match : Ldl_recept_a (HMM E-Value=1.4013e-45)
Length = 291
Score = 35.1 bits (77), Expect = 0.050
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +2
Query: 425 NWGTD-ANGFKLVITAVKDPKHGCKEFRCKQREFCVSADLTCDGVDHCADGSDE 583
NW D +N + V K G +FRC+ C++ + CD + C DGSDE
Sbjct: 113 NWKCDGSNDCRDGTDEVGCGKCGSTQFRCRNGN-CINRNYVCDKDNDCGDGSDE 165
Score = 34.7 bits (76), Expect = 0.066
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +2
Query: 491 CKEFRCKQREFCVSADLTCDGVDHCADGSDEDTVALC 601
C +F+C CV + CDG + C DG+DE C
Sbjct: 99 CSQFKCNNGH-CVHRNWKCDGSNDCRDGTDEVGCGKC 134
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 488 GCKEFRCKQREFCVSADLTCDGVDHCADGSDE 583
G ++RC + C+ + CD ++ C D SDE
Sbjct: 177 GAGQYRC-DNDRCIPLNWVCDRLNDCHDNSDE 207
>SB_5319| Best HMM Match : Ldl_recept_a (HMM E-Value=7.56701e-44)
Length = 212
Score = 35.1 bits (77), Expect = 0.050
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Frame = +2
Query: 464 TAVKDPKHGCK--EFRCKQREFCVSADLTCDGVDHCADGSDE 583
T P GC EF+C+ C+ CD D C D SDE
Sbjct: 65 TKATRPTFGCHSTEFQCETSSRCIPLRFVCDADDDCGDRSDE 106
Score = 32.7 bits (71), Expect = 0.27
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = +2
Query: 491 CK--EFRCKQREFCVSADLTCDGVDHCADGSDEDTVALCPESXGS 619
CK EF C C+ CDG + C D SDE L ES G+
Sbjct: 114 CKPFEFACANGRHCIQRKWICDGENDCGDRSDEVDCGL--ESCGN 156
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +2
Query: 488 GCKEFRCKQREFCVSADLTCDGVDHCADGSDE 583
G +RC C++ CDG C D SDE
Sbjct: 155 GNDRWRCSNTSRCIAKSQVCDGRVDCPDASDE 186
>SB_13477| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 628
Score = 34.7 bits (76), Expect = 0.066
Identities = 18/37 (48%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = +2
Query: 479 PKHGCK--EFRCKQREFCVSADLTCDGVDHCADGSDE 583
P C+ EF C CV L CDGVD C D SDE
Sbjct: 99 PISSCRSWEFSCLNGR-CVFYRLVCDGVDDCGDSSDE 134
Score = 31.9 bits (69), Expect = 0.47
Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Frame = +2
Query: 422 DNWGTDANGFKLVITAVKDPKHGCK--EFRCKQREFCVSADLTCDGVDHCADGSDE 583
D+ G ++ TA C EF+C R CV CDG + C D SDE
Sbjct: 126 DDCGDSSDEMSCNATATPFVPRSCHYWEFQCANRR-CVYNSQRCDGQNDCGDWSDE 180
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Frame = +2
Query: 479 PKHG-C--KEFRCKQREFCVSADLTCDGVDHCADGSDE 583
P HG C FRC C+ CDG + C D SDE
Sbjct: 5 PAHGSCPSNRFRCNNGR-CIPMSWRCDGDNDCGDMSDE 41
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +2
Query: 497 EFRCKQREFCVSADLTCDGVDHCADGSDE 583
+F C C+S CD + C DGSDE
Sbjct: 54 QFSCSNGR-CISRSWVCDRDNDCGDGSDE 81
>SB_13199| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 259
Score = 34.7 bits (76), Expect = 0.066
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +2
Query: 458 VITAVKDPKHGCKEFRCKQREFCVSADLTCDGVDHCADGSDE 583
++ + P+H EF C+ + CV CDG + C DGSDE
Sbjct: 15 IVNCSRCPRH---EFECENK-LCVPRTWLCDGDNDCHDGSDE 52
Score = 33.5 bits (73), Expect = 0.15
Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +2
Query: 482 KHGCKEFRCKQREFCVSADLTCDGVDHCADGSDED-TVALCPESXGSGSSST 634
K G +EF C C+ + CDG+ CAD SDE C E G G S T
Sbjct: 64 KCGIEEFDCGNST-CIPLTVLCDGLYDCADRSDESKKCEECAERNG-GCSDT 113
>SB_35576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1315
Score = 34.3 bits (75), Expect = 0.087
Identities = 20/43 (46%), Positives = 22/43 (51%), Gaps = 8/43 (18%)
Frame = +2
Query: 479 PKHGCKEFRC--KQREF------CVSADLTCDGVDHCADGSDE 583
P H FRC K +F CVS DL CDG + C D SDE
Sbjct: 1108 PVHSVPGFRCPDKSTQFQCVNGQCVSRDLICDGDNACLDFSDE 1150
Score = 32.7 bits (71), Expect = 0.27
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +2
Query: 485 HGCK--EFRCKQREFCVSADLTCDGVDHCADGSDE 583
H C E++C CV LTCDG C DG+DE
Sbjct: 1191 HKCSKDEYQCVSGA-CVKWPLTCDGKKDCEDGTDE 1224
Score = 31.1 bits (67), Expect = 0.81
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 497 EFRCKQREFCVSADLTCDGVDHCADGSDE 583
+F C+ E C+ CDG D C D SDE
Sbjct: 1159 KFACESGE-CIDVVGLCDGTDDCKDASDE 1186
>SB_19614| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 603
Score = 33.9 bits (74), Expect = 0.12
Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 1/118 (0%)
Frame = +2
Query: 293 HLYVYDG-AHATAPPKADLSCRNTKQQVGALFTRSNFVTLKYVTDNWGTDANGFKLVITA 469
++ VYDG HA+ + + TK + +RSN + ++ ++ + G + F
Sbjct: 333 YVQVYDGPGHASVIGQFCGAVMPTK-----VVSRSNKLVVRALSGD-GANTGWFSARYLV 386
Query: 470 VKDPKHGCKEFRCKQREFCVSADLTCDGVDHCADGSDEDTVALCPESXGSGSSSTWLV 643
+ G K+F C+ R+ C+ C+ C DGSDE ++ PE S W V
Sbjct: 387 SSEGPCGPKKFTCQNRQ-CIDDFKQCNNRQDCRDGSDE--ISCPPEQEMLSWYSFWPV 441
>SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26)
Length = 351
Score = 33.9 bits (74), Expect = 0.12
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +2
Query: 524 CVSADLTCDGVDHCADGSDE 583
CV+ LTC+GV C DGSDE
Sbjct: 123 CVTWSLTCNGVSDCQDGSDE 142
Score = 31.9 bits (69), Expect = 0.47
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = +2
Query: 479 PKHGCK--EFRCKQREFCVSADLTCDGVDHCADGSDEDTVA 595
P H C +F+C CV ++ CDG C D SDE A
Sbjct: 34 PSHSCHGDQFQCLNG-MCVGQEVRCDGDYACVDHSDERNCA 73
Score = 31.9 bits (69), Expect = 0.47
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Frame = +2
Query: 497 EFRCKQREFCVSADLTCDGVDHCADGSDE---DTVALCPESXGSGSSSTW 637
EF+C + CV C+G C DGSDE D + G+ TW
Sbjct: 78 EFKCPDGK-CVHPSKFCNGESDCTDGSDEWSCDNSCSSRHACADGTCVTW 126
>SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25)
Length = 147
Score = 33.9 bits (74), Expect = 0.12
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +2
Query: 524 CVSADLTCDGVDHCADGSDE 583
CV+ LTC+GV C DGSDE
Sbjct: 123 CVTWSLTCNGVSDCQDGSDE 142
Score = 33.1 bits (72), Expect = 0.20
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = +2
Query: 479 PKHGCK--EFRCKQREFCVSADLTCDGVDHCADGSDEDTVA 595
P H C +F+C CV +L CDG C D SDE A
Sbjct: 34 PSHSCHGDQFQCLNG-MCVGQELRCDGDYACVDHSDERNCA 73
Score = 31.9 bits (69), Expect = 0.47
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Frame = +2
Query: 497 EFRCKQREFCVSADLTCDGVDHCADGSDE---DTVALCPESXGSGSSSTW 637
EF+C + CV C+G C DGSDE D + G+ TW
Sbjct: 78 EFKCPDGK-CVHPSKFCNGESDCTDGSDEWSCDNSCSSRHACADGTCVTW 126
>SB_26126| Best HMM Match : Ldl_recept_b (HMM E-Value=3e-24)
Length = 652
Score = 33.9 bits (74), Expect = 0.12
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +2
Query: 497 EFRCKQREFCVSADLTCDGVDHCADGSDE 583
EF+C+ C+ CDG C DG DE
Sbjct: 215 EFKCQSTGRCIPESKVCDGTRDCQDGEDE 243
>SB_6273| Best HMM Match : MAM (HMM E-Value=0)
Length = 4272
Score = 33.5 bits (73), Expect = 0.15
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +2
Query: 479 PKHGCK--EFRCKQREFCVSADLTCDGVDHCADGSDEDT 589
P GC E RC + C++A CD C+DGSDE T
Sbjct: 2546 PPPGCNSGEHRCSNGQ-CINAIQVCDFKKDCSDGSDEAT 2583
Score = 33.5 bits (73), Expect = 0.15
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = +2
Query: 497 EFRCKQREFCVSADLTCDGVDHCADGSDE 583
+FRC R C S+D CD D C D SDE
Sbjct: 3624 QFRCT-RGSCTSSDNVCDFSDDCGDSSDE 3651
Score = 31.9 bits (69), Expect = 0.47
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = +2
Query: 476 DPKHGCK--EFRCKQREFCVSADLTCDGVDHCADGSDE 583
DP C +FRC C+S+ CD C DGS+E
Sbjct: 2778 DPPSSCSSNQFRCDSGH-CISSSSKCDFETDCCDGSEE 2814
Score = 31.5 bits (68), Expect = 0.62
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +2
Query: 497 EFRCKQREFCVSADLTCDGVDHCADGSDED 586
+FRC R C+ CD D C D SDE+
Sbjct: 2097 QFRCA-RGSCIDTGRVCDFTDDCGDNSDEN 2125
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +2
Query: 500 FRCKQREFCVSADLTCDGVDHCADGSDEDTVALC 601
FRC C+ L CD + C+DG DE + C
Sbjct: 2251 FRCTDGS-CIMQSLRCDYQNDCSDGLDEASCGTC 2283
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +2
Query: 524 CVSADLTCDGVDHCADGSDEDTVALCP 604
C+ CD D C D SDE AL P
Sbjct: 3216 CIQKSKLCDFTDDCGDNSDEGRCALYP 3242
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/49 (32%), Positives = 19/49 (38%), Gaps = 2/49 (4%)
Frame = +2
Query: 497 EFRCKQR--EFCVSADLTCDGVDHCADGSDEDTVALCPESXGSGSSSTW 637
EF C C+ + CD +C DGSDE SGS W
Sbjct: 3851 EFNCVAEGPNACILSTQVCDFSKNCKDGSDEKNCVQPSCDFSSGSFCGW 3899
>SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34)
Length = 1120
Score = 33.1 bits (72), Expect = 0.20
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +2
Query: 497 EFRCKQREFCVSADLTCDGVDHCADGSDE 583
+F C E C+ L CDG + CAD SDE
Sbjct: 27 QFECTSSE-CIPDVLKCDGSEDCADSSDE 54
>SB_40871| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 279
Score = 32.7 bits (71), Expect = 0.27
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +2
Query: 497 EFRCKQREFCVSADLTCDGVDHCADGSDE 583
+FRC+ CVS CD + C DGSDE
Sbjct: 122 QFRCRNGR-CVSRSWVCDKDNDCGDGSDE 149
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 488 GCKEFRCKQREFCVSADLTCDGVDHCADGSDE 583
G +RC + C+ + CD + C DGSDE
Sbjct: 161 GAGRYRC-DNDRCIPRNWVCDRDNDCGDGSDE 191
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +2
Query: 545 CDGVDHCADGSDEDTVALCPES 610
CDG + C DGSDE C S
Sbjct: 100 CDGENDCRDGSDETGCGSCSSS 121
>SB_35350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 626
Score = 32.7 bits (71), Expect = 0.27
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = +2
Query: 485 HGCK--EFRCKQREFCVSADLTCDGVDHCADGSDEDTVALCPESXGSGSSSTW 637
H C+ EF C + C+ + CDG CAD SDE CP S SS +
Sbjct: 549 HTCRPNEFTCADKR-CILSRWRCDGDRDCADNSDEIN---CPNSSQYCKSSEY 597
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = +2
Query: 491 CK--EFRCKQREFCVSADLTCDGVDHCADGSDEDTV 592
CK E++C E C+ CDG C + SDE TV
Sbjct: 592 CKSSEYQCSTGE-CIHKSWVCDGEFDCLNKSDETTV 626
>SB_50657| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 442
Score = 31.9 bits (69), Expect = 0.47
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +2
Query: 491 CK--EFRCKQREFCVSADLTCDGVDHCADGSDEDTVALCPESXGSGSSS 631
CK +FRC C+S L CD D C D SDE A + SG ++
Sbjct: 5 CKAGDFRCANGR-CISGALVCDLDDDCGDESDERGCAPSAATQVSGRTT 52
>SB_10970| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1256
Score = 31.9 bits (69), Expect = 0.47
Identities = 39/135 (28%), Positives = 53/135 (39%), Gaps = 11/135 (8%)
Frame = +2
Query: 254 MLHFDLLQLDCN-DHLYVYDGAHATAPPKADLSCRNTKQQVG--------ALFTRSNFVT 406
+L D +C+ DHLYVYDG AP LS + +LF+RS
Sbjct: 216 VLELDEFATECSWDHLYVYDGRSIRAPLLGTLSGMRRDAHIKEVADAPIISLFSRSGAAF 275
Query: 407 LKYVTDNWGTDANGFKLVITAVKDPKHGCKEFRCKQREFCVSADLTCDGVDHCADGSDED 586
L + +D NGF + + K C +C D DG CA G
Sbjct: 276 LYFYSDA-NFAMNGFSIKYSI----KLNCL-VKCSYH-----GDCAADGSCVCAAGWGGS 324
Query: 587 TVAL--CPESXGSGS 625
T +L CP + SG+
Sbjct: 325 TCSLPECPITCTSGT 339
>SB_2014| Best HMM Match : MAM (HMM E-Value=0)
Length = 2282
Score = 31.9 bits (69), Expect = 0.47
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +2
Query: 497 EFRCKQREFCVSADLTCDGVDHCADGSDED 586
EF+C C+S CDG +C D SDED
Sbjct: 213 EFQCTSGH-CISGSSRCDGDYNCMDRSDED 241
>SB_31927| Best HMM Match : Ldl_recept_a (HMM E-Value=2.3e-27)
Length = 157
Score = 31.9 bits (69), Expect = 0.47
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 497 EFRCKQREFCVSADLTCDGVDHCADGSDE 583
+FRC+ C++ + CD + C DGSDE
Sbjct: 4 QFRCRNGN-CINRNYVCDKDNDCGDGSDE 31
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 488 GCKEFRCKQREFCVSADLTCDGVDHCADGSDE 583
G ++RC + C+ + CD ++ C D SDE
Sbjct: 43 GAGQYRC-DNDRCIPLNWVCDRLNDCHDNSDE 73
>SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5659
Score = 25.4 bits (53), Expect(2) = 0.53
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +2
Query: 542 TCDGVDHCADGSDEDTV-ALCPESXGS 619
TC +D C+DGS + V A+C G+
Sbjct: 660 TCADIDECSDGSHDCHVNAICTNVPGT 686
Score = 24.6 bits (51), Expect(2) = 0.53
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +2
Query: 506 CKQREFCVSADLTCD 550
CK + CV +DL CD
Sbjct: 620 CKDKNECVGSDLLCD 634
>SB_20531| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 796
Score = 31.5 bits (68), Expect = 0.62
Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Frame = +2
Query: 413 YVTDNWGTDANGFKLVIT--AVKDPKHGC--KEFRCKQREFCVSADLTCDGVDHCADGSD 580
Y T G +GF T A+ P C +EF C + CV CDG C+D SD
Sbjct: 189 YCTCQRGYTGDGFTCTATPRAILSPM-SCSEEEFPCASGD-CVPLTSVCDGSADCSDSSD 246
Query: 581 E 583
E
Sbjct: 247 E 247
>SB_55149| Best HMM Match : Ldl_recept_a (HMM E-Value=2.6e-23)
Length = 190
Score = 31.5 bits (68), Expect = 0.62
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +2
Query: 488 GCKEFRCKQREFCVSADLTCDGVDHCADGSDED 586
G + F+C C+ CDG C D SDE+
Sbjct: 91 GSRHFKCVSDGKCIPKSWRCDGEMDCPDSSDEE 123
>SB_53569| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 921
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = +2
Query: 494 KEFRCKQREFCVSADLTCDGVDHCADGSDE 583
K+ RC C CDG D C DGSDE
Sbjct: 227 KQLRCDNGR-CEDKRWWCDGQDDCNDGSDE 255
>SB_47409| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-17)
Length = 1571
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/38 (42%), Positives = 17/38 (44%)
Frame = +2
Query: 470 VKDPKHGCKEFRCKQREFCVSADLTCDGVDHCADGSDE 583
V P G EF C CV L C+G C D SDE
Sbjct: 721 VSPPGCGNGEFYCGVPGECVPQTLRCNGQMDCRDASDE 758
>SB_22727| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +2
Query: 497 EFRCKQREFCVSADLTCDGVDHCADGSDED 586
EF+C C+S CD +C D SDED
Sbjct: 279 EFQCTSGH-CISGSSRCDSDYNCMDSSDED 307
>SB_18178| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 489
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Frame = +2
Query: 485 HGCKEFRCKQREF---CVSADLTCDGVDHCADGSDED 586
H +F C + C+ CDG CAD SDE+
Sbjct: 269 HPTWQFTCNNNHWWKQCIDISYKCDGKPECADHSDEN 305
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 500 FRCKQREFCVSADLTCDGVDHCADGSDE 583
F+C+ C+ CDG D C D SDE
Sbjct: 364 FKCRSG-VCIPPQWICDGKDDCGDRSDE 390
>SB_11478| Best HMM Match : Toxin_11 (HMM E-Value=1.8)
Length = 392
Score = 29.5 bits (63), Expect = 2.5
Identities = 19/38 (50%), Positives = 19/38 (50%)
Frame = +2
Query: 488 GCKEFRCKQREFCVSADLTCDGVDHCADGSDEDTVALC 601
GC E KQ EF VSADLTC A S D LC
Sbjct: 114 GCLE---KQAEFSVSADLTCPN----ATNSSSDCPGLC 144
>SB_28040| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 391
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +2
Query: 497 EFRCKQREFCVSADLTCDGVDHCADGSDED 586
EF+C C+S CD +C D SDED
Sbjct: 235 EFQCASGH-CISGSSRCDSDYNCMDRSDED 263
>SB_17897| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-14)
Length = 1217
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +2
Query: 497 EFRCKQREFCVSADLTCDGVDHCADGSDED 586
EF+C C+S CD +C D SDED
Sbjct: 1108 EFQCASGH-CISGSSRCDSDYNCMDRSDED 1136
>SB_8478| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1033
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +2
Query: 497 EFRCKQREFCVSADLTCDGVDHCADGSDED 586
EF+C C+S CD +C D SDED
Sbjct: 198 EFQCASGH-CISGSSRCDSDYNCMDRSDED 226
>SB_43556| Best HMM Match : Ldl_recept_a (HMM E-Value=2.7e-11)
Length = 65
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = +2
Query: 500 FRCKQREFCVSADLTCDGVDHCADGSDEDTVALCPESXGSGSSSTWL 640
F+C C+SA CD + C D SDE C + TW+
Sbjct: 12 FKCDNGR-CISATWVCDTENDCGDNSDEMN---CSKYDNKNHYYTWI 54
>SB_1976| Best HMM Match : FYVE (HMM E-Value=0.6)
Length = 157
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +2
Query: 185 GQGNERNLDCTVTFQTHSILQRFMLHFDLLQLDCND 292
G+GN R CT ++ + L+R + H D ++L+ N+
Sbjct: 55 GKGNSRLFICTKCYKRLAKLERALKHVDSVKLEINE 90
>SB_48544| Best HMM Match : TSP_1 (HMM E-Value=3.1e-32)
Length = 326
Score = 28.7 bits (61), Expect = 4.3
Identities = 19/52 (36%), Positives = 23/52 (44%)
Frame = +2
Query: 476 DPKHGCKEFRCKQREFCVSADLTCDGVDHCADGSDEDTVALCPESXGSGSSS 631
DP G C++ E C + CD D CA GS V+ GSGS S
Sbjct: 237 DPVQGKGIQYCRE-ERCGKTSVGCDDDDSCASGSGSGFVS---SGSGSGSGS 284
>SB_38935| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 281
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = +2
Query: 500 FRCKQREFCVSADLTCDGVDHCADGSDE-DTVALCPESXG 616
FRC E TC +D C + +D+ D ALC G
Sbjct: 211 FRCNCMEGYTGDGKTCQDIDECTNETDDCDANALCTNVPG 250
>SB_17568| Best HMM Match : Ldl_recept_a (HMM E-Value=0.04)
Length = 189
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/37 (35%), Positives = 15/37 (40%)
Frame = +2
Query: 494 KEFRCKQREFCVSADLTCDGVDHCADGSDEDTVALCP 604
K+F C + D C DGSDE A CP
Sbjct: 44 KDFTCLDGSLTIPFSSVNDDYCDCNDGSDEPGTAACP 80
>SB_817| Best HMM Match : Peptidase_S28 (HMM E-Value=0)
Length = 826
Score = 28.7 bits (61), Expect = 4.3
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Frame = -3
Query: 621 PLPXLSGHRATVSSSEPSAQWSTPSQVRSALTQNSLCLHLNSLQPCL-GSLTAVMTSLKP 445
PLP G +A +++ + S P+Q R + Q+SL + L + GS+ A+ K
Sbjct: 343 PLPAQMGTKAISATTSATDYMSGPTQERRIIIQSSLLVLLMIFGILMNGSMCALFVRFKS 402
Query: 444 FASVPQLS-VTYFRVTKLLRV 385
+V +L V + +LL V
Sbjct: 403 MRNVVKLGLVLDLAIVELLDV 423
>SB_11608| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 854
Score = 27.9 bits (59), Expect = 7.6
Identities = 20/69 (28%), Positives = 26/69 (37%)
Frame = -1
Query: 410 SGSRSCCA*TGLRPAAWCSGTISQPSAARWHAPRRTRRDGHCNPIAVDRNAA*TSGGCCA 231
+G+R+C + L P C S S + W D DR +GG C
Sbjct: 764 TGNRTCFSEGTLNPGNPCQVCNSFASPSTWSNLEGAPCDDRDKCTRSDR----CTGGLCV 819
Query: 230 SGKSRCSPD 204
K CSPD
Sbjct: 820 GSKFTCSPD 828
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,235,256
Number of Sequences: 59808
Number of extensions: 418753
Number of successful extensions: 1338
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 1128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1337
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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