Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0918
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   1.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.6  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   2.6  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    21   7.8  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   7.8  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        21   7.8  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = -3

Query: 528  TQNSLCLHLNSLQPCLGSLTAVMTSLKPF 442
            T + +C  +  +  C    TAV T  KP+
Sbjct: 1697 TDDKICFTMRPVVSCASGCTAVETKSKPY 1725


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/43 (23%), Positives = 15/43 (34%)
 Frame = +2

Query: 509 KQREFCVSADLTCDGVDHCADGSDEDTVALCPESXGSGSSSTW 637
           +  +F    +  C  + HC D    D    CP      +  TW
Sbjct: 731 RSEQFLCRYEAHCFALCHCCDFDACDCEMTCPAGCKCYNDRTW 773


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 7/28 (25%), Positives = 19/28 (67%)
 Frame = +1

Query: 433 HGRERLQARHHCSQRS*ARLQGVQVQAE 516
           H +E+ +  HHC+Q +  +L  ++++++
Sbjct: 57  HNKEKSKNNHHCNQDT-EKLNQLEIESD 83


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -3

Query: 486 CLGSLTAVMTSL 451
           C+G + AVMTSL
Sbjct: 5   CIGDMGAVMTSL 16


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = +2

Query: 404 TLKYVTDNWGTDANGFKLVITAVKDPKHGCKEFR 505
           T+ Y      T    F  ++  V  PKH C E+R
Sbjct: 229 TVPYTETETETWTRVFNTLVDLV--PKHACAEYR 260


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 6/20 (30%), Positives = 13/20 (65%)
 Frame = +3

Query: 6   APASPRPRHEGTRTASSPSS 65
           +P    P+H G+  ++SP++
Sbjct: 63  SPTGSSPQHSGSSASTSPAA 82


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,174
Number of Sequences: 438
Number of extensions: 3211
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)