Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0918
         (650 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g51380.1 68418.m06370 F-box family protein contains Pfam PF00...    29   2.7  
At5g05500.1 68418.m00596 pollen Ole e 1 allergen and extensin fa...    29   3.5  
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3...    29   3.5  
At5g60690.1 68418.m07616 homeodomain-leucine zipper protein Revo...    28   6.2  
At5g11480.1 68418.m01340 expressed protein                             27   8.2  
At2g20190.1 68415.m02361 CLIP-associating protein (CLASP) -relat...    27   8.2  

>At5g51380.1 68418.m06370 F-box family protein contains Pfam
           PF00646: F-box domain; similar to  F-box protein FBL2
           (GI:6063090) [Homo sapiens]
          Length = 479

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +2

Query: 350 CRNTKQQVGALFTRSNFVTLKYVTDNWGTDANGFKL 457
           C N K+ + ALF   + VT   + D WG D + F L
Sbjct: 351 CLNDKEGMRALFKVCDGVTKVNIQDCWGLDDDSFSL 386


>At5g05500.1 68418.m00596 pollen Ole e 1 allergen and extensin
           family protein contains Pfam domain, PF01190: Pollen
           proteins Ole e I family
          Length = 183

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
 Frame = +2

Query: 311 GAHATAPPKADLSCRNTKQQVGALFTRSNFVTLKYVTDNWG---TDANGFKLVITAVKDP 481
           GA A A  K  + C+N +QQV       +F  + + TD++G    +  GFK+    +  P
Sbjct: 64  GAEAIAGAKISIICKNHRQQV-------SFYKV-FRTDSYGHFYGELKGFKMTPHFLDHP 115

Query: 482 KHGCK-EFRCKQREFC 526
            H C+ +     RE C
Sbjct: 116 LHSCRAKLVSSPREDC 131


>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
           almost identical to SC35-like splicing factor SCL30a
           GI:9843661 from [Arabidopsis thaliana]; contains Pfam
           profile PF00076: RNA recognition motif. (a.k.a. RRM,
           RBD, or RNP domain)
          Length = 262

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +3

Query: 3   RAPASPRPRHEGTRTASSPSSDILRR*LHFCREKQV 110
           R+P SPR R  G+R +  P+S ++R   H CR++ +
Sbjct: 19  RSP-SPRGRFGGSRDSDLPTSLLVRNLRHDCRQEDL 53


>At5g60690.1 68418.m07616 homeodomain-leucine zipper protein
           Revoluta (REV) / fascicular fiberless 1 (IFL1) identical
           to HD-zip transcription factor Revoluta (GI:9759333)
           {Arabidopsis thaliana}; contains Pfam profiles PF01852:
           START domain and PF00046: Homeobox domain
          Length = 842

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
 Frame = -2

Query: 322 GMRPVVHVEMVIAIQLQ*IEMQHEPLEDAVRLESHGAVQIPLVTLTTGHLRLTFCIDVEE 143
           GMRP       I + L    ++HE + + VRLE H   Q         HL L  C  ++E
Sbjct: 496 GMRPTRFTGSQIIMPLG-HTIEHEEMLEVVRLEGHSLAQEDAFMSRDVHL-LQICTGIDE 553

Query: 142 S--GPC 131
           +  G C
Sbjct: 554 NAVGAC 559


>At5g11480.1 68418.m01340 expressed protein
          Length = 318

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 16/58 (27%), Positives = 23/58 (39%)
 Frame = +2

Query: 329 PPKADLSCRNTKQQVGALFTRSNFVTLKYVTDNWGTDANGFKLVITAVKDPKHGCKEF 502
           PP+ D+S  ++      +   SN V  KY  D     A+  K  +     P  G  EF
Sbjct: 81  PPETDISGEDSASLTTRILKGSNIVLSKYARDAQVVQADYVKSSVKTEDCPADGLPEF 138


>At2g20190.1 68415.m02361 CLIP-associating protein (CLASP) -related
           similar to CLIP-associating protein CLASP2 (GI:13508651)
           [Rattus norvegicus]
          Length = 1439

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -1

Query: 344 SQPSAARWHAPRRTRRDGHCNPIAVDRNAA*TSGGCCASG 225
           SQPS ++  AP      G    +A+DR++  +SGG  +SG
Sbjct: 521 SQPSFSQTSAPSNLPGYGTSAIVAMDRSSNLSSGGSLSSG 560


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,764,522
Number of Sequences: 28952
Number of extensions: 278680
Number of successful extensions: 806
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)