Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0917
         (620 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X51937-1|CAA36201.1|  984|Drosophila melanogaster protein ( Dros...    30   2.2  
X15469-1|CAA33496.1|  633|Drosophila melanogaster protein ( Dros...    30   2.2  
AE014296-2411|AAF49717.2| 1333|Drosophila melanogaster CG17177-P...    30   2.9  

>X51937-1|CAA36201.1|  984|Drosophila melanogaster protein (
           Drosophila melanogasterNOF-FB transposable element. ).
          Length = 984

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = -3

Query: 555 NXXTXLVKSHCLEPPDSR-GSTVSISLPDS 469
           N  + ++K HCL  PD + G  +S+S+PD+
Sbjct: 107 NDCSSILKGHCLVKPDEQCGIMISVSVPDT 136


>X15469-1|CAA33496.1|  633|Drosophila melanogaster protein (
           Drosophila melanogasterDNA for complete foldback (FB)
           transposable n.  ).
          Length = 633

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = -3

Query: 555 NXXTXLVKSHCLEPPDSR-GSTVSISLPDS 469
           N  + ++K HCL  PD + G  +S+S+PD+
Sbjct: 179 NDCSSILKGHCLVKPDEQCGIMISVSVPDT 208


>AE014296-2411|AAF49717.2| 1333|Drosophila melanogaster CG17177-PA
           protein.
          Length = 1333

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = -2

Query: 400 RSAECMNQMSETAVPLVLSSITIATTSHQ*G 308
           +  EC  Q+S  ++ LV+S+IT+AT +H  G
Sbjct: 701 QQCECHAQVSIASLLLVISAITVATNTHDYG 731


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,234,186
Number of Sequences: 53049
Number of extensions: 450940
Number of successful extensions: 956
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2559155400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)