Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0916
         (410 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomy...   154   6e-39
SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein S23|Schizosac...   154   6e-39
SPAC4F8.06 |||mitochondrial ribosomal protein subunit S12|Schizo...    43   2e-05
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    26   2.6  
SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyce...    26   2.6  
SPCC550.08 |||N-acetyltransferase |Schizosaccharomyces pombe|chr...    25   3.5  
SPBC56F2.12 |ilv5||acetohydroxyacid reductoisomerase|Schizosacch...    25   6.1  
SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|...    24   8.0  
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    24   8.0  
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch...    24   8.0  

>SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score =  154 bits (373), Expect = 6e-39
 Identities = 71/90 (78%), Positives = 80/90 (88%)
 Frame = -2

Query: 397 KVGVQXKQPNSAIRKCVRVQLIKNGKKVXAFVPRDGCLNHIEENDEVLVAGFGRKGHAVG 218
           K+GV+ KQPNSAIRKCVRVQLIKNGKKV AFVP DGCLN ++ENDEVL++GFGRKG A G
Sbjct: 54  KIGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDEVLLSGFGRKGKAKG 113

Query: 217 DIPGVRFKVVKVANVSLLALYKEKKERPRS 128
           DIPGVRFKVVKVA V L AL+ EKKE+PR+
Sbjct: 114 DIPGVRFKVVKVAGVGLSALFHEKKEKPRA 143


>SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score =  154 bits (373), Expect = 6e-39
 Identities = 71/90 (78%), Positives = 80/90 (88%)
 Frame = -2

Query: 397 KVGVQXKQPNSAIRKCVRVQLIKNGKKVXAFVPRDGCLNHIEENDEVLVAGFGRKGHAVG 218
           K+GV+ KQPNSAIRKCVRVQLIKNGKKV AFVP DGCLN ++ENDEVL++GFGRKG A G
Sbjct: 54  KIGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDEVLLSGFGRKGKAKG 113

Query: 217 DIPGVRFKVVKVANVSLLALYKEKKERPRS 128
           DIPGVRFKVVKVA V L AL+ EKKE+PR+
Sbjct: 114 DIPGVRFKVVKVAGVGLSALFHEKKEKPRA 143


>SPAC4F8.06 |||mitochondrial ribosomal protein subunit
           S12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 43.2 bits (97), Expect = 2e-05
 Identities = 28/68 (41%), Positives = 43/68 (63%)
 Frame = -2

Query: 388 VQXKQPNSAIRKCVRVQLIKNGKKVXAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIP 209
           V+ K+PNSA+RK  RV+L   G+ V A++P  G  ++ +E+  VL+ G GR      D P
Sbjct: 61  VKPKKPNSAVRKVARVRL-STGRSVTAYIP--GIGHNAQEHAVVLLRG-GR----AQDCP 112

Query: 208 GVRFKVVK 185
           GV++ VV+
Sbjct: 113 GVQYHVVR 120


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +3

Query: 189 TTLKRTPGMSPTA*PLRPNPATSTSSFSSMWFRQPSR 299
           +++K  P + P   P  P+ AT+TSS  +++   PSR
Sbjct: 392 SSVKALPTLEP---PSSPSHATATSSLHTLFHTAPSR 425


>SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
 Frame = +2

Query: 35  HNIYYVLGFYIL*TYKQRASRQQVTYHNVHL*SWSLLFLFVESEERHVGYFYHLKTN--S 208
           HN  Y++  Y   T K++  R  +++HN     W+ L  F+      + YFY   ++  S
Sbjct: 179 HNNPYIIRGYRFYTSKRKCFRSILSWHNETFNIWTHLSAFIVF-FAVLAYFYPSSSSWVS 237

Query: 209 GNVTDGV 229
            NV++ +
Sbjct: 238 SNVSNRI 244


>SPCC550.08 |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 247

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +2

Query: 131 SWSLLFLFVESEERHVGYFYHLKTNSGNVTD--GVTFTTESRH 253
           SW L+++ V S+E+  GY   L     N+ D  G+    ES H
Sbjct: 129 SWYLVYVGVSSKEQGKGYLRKLIEPIFNICDQEGLPIYLESSH 171


>SPBC56F2.12 |ilv5||acetohydroxyacid
           reductoisomerase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -2

Query: 301 PRDGCLNHIEENDEVLVAGFGRKGHAVG 218
           PR+  +++ + ND + + G+G +GH  G
Sbjct: 74  PREKLVDYFK-NDTLAIIGYGSQGHGQG 100


>SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 393

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 97  TAGHLSQCTPMILVAPFSLCRERGETRWLL 186
           TA  L+QC  +I +  F++ RE     WLL
Sbjct: 212 TAVFLAQCVKVISIGLFNIRREMMIIIWLL 241


>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
 Frame = +3

Query: 249 ATSTSSFSSMWFRQPS---RGTNAXTFFPFLMSCTRTHLRMA 365
           ++S S F S+WFRQ +       A T+F   MS    HL  A
Sbjct: 154 SSSVSCFFSLWFRQTNIVWMVFIAVTYFASNMSFFNPHLAEA 195


>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 815

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = +2

Query: 41  IYYVLGFYIL*TYKQRASRQQVTYHNVHL*SWSLLFLFVESEERHVGYFYHLKTNSGN 214
           + YV G     TY     + ++ Y   +  ++  LFL +      VGY++HL  N  N
Sbjct: 234 VSYVSGIVFYTTYADFPKKIRLLYSGNYQGNFFPLFLSILC----VGYYHHLLNNPSN 287


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,475,334
Number of Sequences: 5004
Number of extensions: 26821
Number of successful extensions: 66
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)