Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0916
         (410 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33031| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)              170   4e-43
SB_37381| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)              128   2e-30
SB_54786| Best HMM Match : Ribosomal_S12 (HMM E-Value=1.4e-12)         33   0.12 
SB_3221| Best HMM Match : rve (HMM E-Value=3)                          28   3.4  
SB_27475| Best HMM Match : PCMT (HMM E-Value=5.5)                      27   6.0  

>SB_33031| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)
          Length = 143

 Score =  170 bits (413), Expect = 4e-43
 Identities = 78/88 (88%), Positives = 85/88 (96%)
 Frame = -2

Query: 391 GVQXKQPNSAIRKCVRVQLIKNGKKVXAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDI 212
           GV+ KQPNSAIRKCVRVQLIKNGKK+ AFVP DGCLN+IEENDEVL++GFGR+GHAVGDI
Sbjct: 56  GVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNYIEENDEVLISGFGRRGHAVGDI 115

Query: 211 PGVRFKVVKVANVSLLALYKEKKERPRS 128
           PGVRFKVVKVANVSLLAL+KEKKERPRS
Sbjct: 116 PGVRFKVVKVANVSLLALFKEKKERPRS 143


>SB_37381| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)
          Length = 413

 Score =  128 bits (308), Expect = 2e-30
 Identities = 56/67 (83%), Positives = 63/67 (94%)
 Frame = -2

Query: 403 LXKVGVQXKQPNSAIRKCVRVQLIKNGKKVXAFVPRDGCLNHIEENDEVLVAGFGRKGHA 224
           L KVGV+ KQPNSAIRKCVRVQLIKNGKK+ AFVP DGCLN+IEENDEVL++GFGR+GHA
Sbjct: 51  LEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNYIEENDEVLISGFGRRGHA 110

Query: 223 VGDIPGV 203
           VGDIPG+
Sbjct: 111 VGDIPGI 117


>SB_54786| Best HMM Match : Ribosomal_S12 (HMM E-Value=1.4e-12)
          Length = 302

 Score = 32.7 bits (71), Expect = 0.12
 Identities = 14/27 (51%), Positives = 20/27 (74%)
 Frame = -2

Query: 379 KQPNSAIRKCVRVQLIKNGKKVXAFVP 299
           K+PNSA RKC  ++L  NGK + A++P
Sbjct: 242 KKPNSAQRKCALLKL-SNGKTISAYIP 267


>SB_3221| Best HMM Match : rve (HMM E-Value=3)
          Length = 324

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 22/68 (32%), Positives = 33/68 (48%)
 Frame = +3

Query: 105 SLITMYTYDLGRSFFSL*RARRDTLATFTTLKRTPGMSPTA*PLRPNPATSTSSFSSMWF 284
           S  T  TYDL  SF+S+  +  + LAT   +K++P +   +  L+P  A   S  S    
Sbjct: 9   SFDTFPTYDLA-SFYSVLCSGDEQLATIKLMKKSPSLFQKSHTLKPR-ANCASIASETLA 66

Query: 285 RQPSRGTN 308
           +Q  R  N
Sbjct: 67  QQCWRSLN 74


>SB_27475| Best HMM Match : PCMT (HMM E-Value=5.5)
          Length = 63

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -2

Query: 292 GCLNHIEENDEVLVAGFGRKGHA 224
           G  N +EEN  +LV G GRKG++
Sbjct: 39  GNANLLEENRLILVTGDGRKGYS 61


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,579,020
Number of Sequences: 59808
Number of extensions: 230210
Number of successful extensions: 439
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 752487277
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)