Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0916
         (410 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical pr...   167   4e-42
Z92838-1|CAB07406.1|  157|Caenorhabditis elegans Hypothetical pr...    38   0.004
AL132898-6|CAC14409.1|  187|Caenorhabditis elegans Hypothetical ...    28   3.0  
AL132898-5|CAC14408.1|  316|Caenorhabditis elegans Hypothetical ...    28   3.0  
Z92782-8|CAB07185.1|  197|Caenorhabditis elegans Hypothetical pr...    27   7.0  
AF025467-6|AAB71037.2|   95|Caenorhabditis elegans Hypothetical ...    27   7.0  

>Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical
           protein F28D1.7 protein.
          Length = 143

 Score =  167 bits (405), Expect = 4e-42
 Identities = 76/92 (82%), Positives = 84/92 (91%)
 Frame = -2

Query: 403 LXKVGVQXKQPNSAIRKCVRVQLIKNGKKVXAFVPRDGCLNHIEENDEVLVAGFGRKGHA 224
           L K+GV+ KQPNSAIRKCVRVQLIKNGKK+ AFVP DGCLN +EENDEVLV+GFGR GHA
Sbjct: 52  LEKIGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFVEENDEVLVSGFGRSGHA 111

Query: 223 VGDIPGVRFKVVKVANVSLLALYKEKKERPRS 128
           VGDIPGVRFK+VKVAN SL+AL+K KKERPRS
Sbjct: 112 VGDIPGVRFKIVKVANTSLIALFKGKKERPRS 143


>Z92838-1|CAB07406.1|  157|Caenorhabditis elegans Hypothetical
           protein T03D8.2 protein.
          Length = 157

 Score = 37.5 bits (83), Expect = 0.004
 Identities = 21/49 (42%), Positives = 33/49 (67%)
 Frame = -2

Query: 379 KQPNSAIRKCVRVQLIKNGKKVXAFVPRDGCLNHIEENDEVLVAGFGRK 233
           K+PNS  RKC  V+L   G +V A++P  G  ++++E+ +VLV G GR+
Sbjct: 89  KKPNSGNRKCAIVRL-STGAEVCAYIPNVG--HNLQEHSQVLVKG-GRR 133


>AL132898-6|CAC14409.1|  187|Caenorhabditis elegans Hypothetical
           protein Y59A8B.9 protein.
          Length = 187

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 192 TLKRTPGMSPTA*PLRPNPATSTSS 266
           T  RTP  +P A P RP P+ S+++
Sbjct: 38  TTMRTPAATPAAPPTRPTPSRSSAA 62


>AL132898-5|CAC14408.1|  316|Caenorhabditis elegans Hypothetical
           protein Y59A8B.7 protein.
          Length = 316

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 192 TLKRTPGMSPTA*PLRPNPATSTSS 266
           T  RTP  +P A P RP P+ S+++
Sbjct: 167 TTMRTPAATPAAPPTRPTPSRSSAA 191


>Z92782-8|CAB07185.1|  197|Caenorhabditis elegans Hypothetical
           protein F14F8.9 protein.
          Length = 197

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = -2

Query: 289 CLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKV 182
           C N + E+DEV+    G+  H+   +P +  K++++
Sbjct: 129 CKNKLIEHDEVVTLIIGKGNHSRHQVPVIYNKLIEI 164


>AF025467-6|AAB71037.2|   95|Caenorhabditis elegans Hypothetical
           protein R148.2 protein.
          Length = 95

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
 Frame = -2

Query: 277 IEENDEVLVAGFGRKGHAVGDIPGVRF----KVVKVANVSLLALYKEKKERPR 131
           +E+N   +++  G  G  V D  GVR     K+  +ANV  L +   K   P+
Sbjct: 5   LEQNVTAMMSSTGASGITVADSEGVRLHSAGKITDMANVGSLMIADAKNMFPK 57


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,375,738
Number of Sequences: 27780
Number of extensions: 159419
Number of successful extensions: 437
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)