Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0916
(410 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g02960.1 68418.m00239 40S ribosomal protein S23 (RPS23B) ribo... 170 4e-43
At3g09680.1 68416.m01147 40S ribosomal protein S23 (RPS23A) simi... 170 4e-43
At2g07675.1 68415.m00903 ribosomal protein S12 mitochondrial fam... 34 0.032
At5g50790.1 68418.m06292 nodulin MtN3 family protein similar to ... 27 3.7
At4g36080.1 68417.m05136 FAT domain-containing protein / phospha... 27 6.5
At1g26460.1 68414.m03227 pentatricopeptide (PPR) repeat-containi... 27 6.5
At4g05280.1 68417.m00799 Ulp1 protease family protein contains P... 26 8.6
At1g68190.1 68414.m07790 zinc finger (B-box type) family protein 26 8.6
>At5g02960.1 68418.m00239 40S ribosomal protein S23 (RPS23B)
ribosomal protein S23, Fragaria x ananassa, PIR:S56673
Length = 142
Score = 170 bits (413), Expect = 4e-43
Identities = 77/92 (83%), Positives = 86/92 (93%)
Frame = -2
Query: 403 LXKVGVQXKQPNSAIRKCVRVQLIKNGKKVXAFVPRDGCLNHIEENDEVLVAGFGRKGHA 224
L K+G++ KQPNSAIRKC RVQLIKNGKK+ AFVP DGCLN+IEENDEVL+AGFGRKGHA
Sbjct: 51 LEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHA 110
Query: 223 VGDIPGVRFKVVKVANVSLLALYKEKKERPRS 128
VGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 111 VGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142
>At3g09680.1 68416.m01147 40S ribosomal protein S23 (RPS23A) similar
to 40S ribosomal protein S23 (S12) GB:P46297 from
[Fragaria x ananassa]
Length = 142
Score = 170 bits (413), Expect = 4e-43
Identities = 77/92 (83%), Positives = 86/92 (93%)
Frame = -2
Query: 403 LXKVGVQXKQPNSAIRKCVRVQLIKNGKKVXAFVPRDGCLNHIEENDEVLVAGFGRKGHA 224
L K+G++ KQPNSAIRKC RVQLIKNGKK+ AFVP DGCLN+IEENDEVL+AGFGRKGHA
Sbjct: 51 LEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHA 110
Query: 223 VGDIPGVRFKVVKVANVSLLALYKEKKERPRS 128
VGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 111 VGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142
>At2g07675.1 68415.m00903 ribosomal protein S12 mitochondrial family
protein
Length = 125
Score = 34.3 bits (75), Expect = 0.032
Identities = 24/65 (36%), Positives = 38/65 (58%)
Frame = -2
Query: 379 KQPNSAIRKCVRVQLIKNGKKVXAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVR 200
K+PNSA RK +V+L N + A +P +G ++ +E+ VL+ G GR V D PGV+
Sbjct: 43 KKPNSAPRKIAKVRL-SNRHDIFAHIPGEG--HNSQEHSTVLIRG-GR----VKDSPGVK 94
Query: 199 FKVVK 185
++
Sbjct: 95 SHCIR 99
>At5g50790.1 68418.m06292 nodulin MtN3 family protein similar to
MtN3 GI:1619602 (root nodule development) from [Medicago
truncatula]
Length = 289
Score = 27.5 bits (58), Expect = 3.7
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -2
Query: 193 VVKVANVSLLALYKEKKERPRS*VYIVISDLLSGSALF 80
VV++ +SL Y KKE+ + +++ D+L A+F
Sbjct: 80 VVQIVYISLFFFYAPKKEKTLTVKFVLFVDVLGFGAIF 117
>At4g36080.1 68417.m05136 FAT domain-containing protein /
phosphatidylinositol 3- and 4-kinase family protein
contains Pfam profiles PF00454: Phosphatidylinositol 3-
and 4-kinase, PF02259: FAT domain, PF02260: FATC domain
Length = 3839
Score = 26.6 bits (56), Expect = 6.5
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +1
Query: 58 ILHFMNL*TTRFPTAGHLSQCTPMILVAPFSLCRERGETRWLLLPP 195
+LHF+NL ++ HL Q M+++ + + G+T W ++ P
Sbjct: 1731 VLHFLNLFQSKQLGHDHLVQAMQMLILPMLAHAFQNGQT-WEVIDP 1775
>At1g26460.1 68414.m03227 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 630
Score = 26.6 bits (56), Expect = 6.5
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = +3
Query: 177 LATFTTLKRTPGMSPTA*PLRPNPATSTSSFSSMWFRQPSRGT 305
LAT +T T+ PL PNPAT + + W R P T
Sbjct: 43 LATESTDHDPSNHQSTSTPLPPNPATGSPLYQENW-RSPIPNT 84
>At4g05280.1 68417.m00799 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At3g24380, At5g36840,
At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
At2g05560, At4g08880, At1g34730, At1g27790, At1g34740,
At1g27780, At5g36850, At3g42730, At1g52020, At3g24390,
At1g25886, At4g03300
Length = 1312
Score = 26.2 bits (55), Expect = 8.6
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -2
Query: 331 KNGKKVXAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVV-KVANVS 170
K KK VP+ + E D+V GF K V D+P + +VV + NVS
Sbjct: 819 KEEKKSSPKVPKKVKNQLVYEQDDVHPHGFKAKTVLVPDVPNQQIEVVIRAENVS 873
>At1g68190.1 68414.m07790 zinc finger (B-box type) family protein
Length = 356
Score = 26.2 bits (55), Expect = 8.6
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +3
Query: 240 PNPATSTSSFSSMWFRQP-SRGTNAXTFFPFLMSCTR 347
P PA+ST SFSS P S +F P L + TR
Sbjct: 300 PKPASSTISFSSSETDNPYSHSEEVISFCPSLSNNTR 336
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,889,043
Number of Sequences: 28952
Number of extensions: 148735
Number of successful extensions: 381
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 381
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 615542944
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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