Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0914
(700 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 33 0.039
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 31 0.21
SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces pom... 30 0.37
SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyc... 29 0.48
SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M... 28 1.1
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac... 27 2.6
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ... 27 2.6
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 2.6
SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4 |Schi... 27 2.6
SPAC17G6.09 |sec62||ER protein translocation subcomplex subunit ... 27 2.6
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz... 26 4.5
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc... 26 6.0
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 25 7.9
SPAC23G3.10c |ssr3||SWI/SNF and RSC complex subunit Ssr3|Schizos... 25 7.9
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 25 7.9
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 25 7.9
SPAC4H3.01 |||DNAJ domain protein Caj1/Djp1 type|Schizosaccharom... 25 7.9
SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr ... 25 7.9
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 33.1 bits (72), Expect = 0.039
Identities = 42/205 (20%), Positives = 79/205 (38%), Gaps = 3/205 (1%)
Frame = +3
Query: 45 TEVSTHKLIPELYEKSTEPPYVEPKDQETTPYVVELEEHTQKSELSTIYSTTQETTSASX 224
T VS+ +I Y ++ P +++TP ++ E + +E S++ S+ E+T A+
Sbjct: 178 TNVSS-SVIATAYTSASSTILSSPSVEQSTPSIITQTESSTTTEGSSVASS--ESTIANS 234
Query: 225 XXXXXXXXXXXXXXXASK---EQHPTEMDSSKDSEETSTQYKIPXXXXXXXXXXXXXAVD 395
A+K Q TE SS S + +
Sbjct: 235 DQSSFITYESTQNPTANKTDASQQSTESTSSSASAYSYITTLQTATTAQQTTSENTYSTS 294
Query: 396 DSHKTPTATIDFDQSSVSTTELIYKKETTPTVQEPTESPEKITSTSSKPLDAVHEQDLIP 575
+ T + T S++S++ I + +P+V T S IT+ S+ + + + P
Sbjct: 295 GPNLTTSNTSPQISSTISSSSFIVE---SPSVALSTSSTTTITNASTPAANTIISRSSKP 351
Query: 576 TSTTKTADISEQALEKFTKPDTKPS 650
T TT + + E + T P+
Sbjct: 352 TDTTNSISFANTTPENTSTQITSPT 376
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 30.7 bits (66), Expect = 0.21
Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Frame = +3
Query: 387 AVDDSHKTPTATIDFDQSSVSTTELIYKKETTP-TVQEPTESPEKITSTSSKPLDAVHEQ 563
++ S K PTA++ SV ++ + + +TP + SP+ STSS+ + V
Sbjct: 451 SISTSVKQPTASVASSSVSVPSSSSVQPQSSTPISSSSSASSPQSTLSTSSEVVSEVSST 510
Query: 564 DLIPTSTTKTADISEQALEKFTKPDT 641
L +S + S + + P T
Sbjct: 511 LLSGSSAIPSTSSSTPSSSIISSPMT 536
Score = 25.8 bits (54), Expect = 6.0
Identities = 20/88 (22%), Positives = 33/88 (37%)
Frame = +3
Query: 393 DDSHKTPTATIDFDQSSVSTTELIYKKETTPTVQEPTESPEKITSTSSKPLDAVHEQDLI 572
D T T SSV ++ L + ++ + +TST S+ V
Sbjct: 863 DSVTSTTALTSQGPSSSVVSSSLSSTTSLSTSIPVTSSVAPAVTSTGSETSSVVGSGTDS 922
Query: 573 PTSTTKTADISEQALEKFTKPDTKPSES 656
TS++ TA+ S A+ P+ S
Sbjct: 923 ATSSSWTAETSSSAITSSVAASVTPTSS 950
>SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 332
Score = 29.9 bits (64), Expect = 0.37
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +3
Query: 405 KTPTATIDFDQSSVSTTELIYKKETTPTVQEPTE 506
K+P ++I+F S +ST +L+Y+ E P + +E
Sbjct: 250 KSPFSSIEFANSPISTIKLLYQLEVPPDFTKSSE 283
>SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 572
Score = 29.5 bits (63), Expect = 0.48
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +3
Query: 462 IYKKETTPTVQEPTESPEKITSTSSKPLDAVHEQDLIPTSTTKTADISE 608
+Y KE TP+ E EK+ +S L+ +HE +P S T + D +
Sbjct: 353 LYNKELTPSTDE--NKLEKLCFKASWALNVLHEGFDVPKSNTSSNDAKD 399
>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1220
Score = 28.3 bits (60), Expect = 1.1
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Frame = +3
Query: 39 LITEVSTHKLIPELYEKSTEPPYVEPKDQETTPYVVELEEHTQKSELSTIYSTTQ--ETT 212
++ E S + + LY S E TTP +E+ E + +TIYS T TT
Sbjct: 103 VVVETSANTITTTLYSGSLEFTTTLDSANGTTPATIEVVEPAAGTVTTTIYSGTTPFNTT 162
Query: 213 SAS 221
AS
Sbjct: 163 LAS 165
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 126 ETTPYVVELEEHTQKSELSTIYSTTQETTS 215
+T P VE+ E + +T+YS TQE T+
Sbjct: 168 DTVPGTVEVVEPEAGTVTTTVYSGTQEYTT 197
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 126 ETTPYVVELEEHTQKSELSTIYSTTQETTS 215
+T P VE+ E + +T+YS TQE T+
Sbjct: 240 DTVPGTVEVVEPEAGTVTTTVYSGTQEYTT 269
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 126 ETTPYVVELEEHTQKSELSTIYSTTQETTS 215
+T P VE+ E + +T+YS TQE T+
Sbjct: 312 DTVPGTVEVVEPEAGTVTTTVYSGTQEYTT 341
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 126 ETTPYVVELEEHTQKSELSTIYSTTQETTS 215
+T P VE+ E + +T+YS TQE T+
Sbjct: 384 DTVPGTVEVVEPEAGTVTTTVYSGTQEYTT 413
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 126 ETTPYVVELEEHTQKSELSTIYSTTQETTS 215
+T P VE+ E + +T+YS TQE T+
Sbjct: 456 DTVPGTVEVVEPEAGTVTTTVYSGTQEYTT 485
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 126 ETTPYVVELEEHTQKSELSTIYSTTQETTS 215
+T P VE+ E + +T+YS TQE T+
Sbjct: 528 DTVPGTVEVVEPEAGTVTTTVYSGTQEYTT 557
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 126 ETTPYVVELEEHTQKSELSTIYSTTQETTS 215
+T P VE+ E + +T+YS TQE T+
Sbjct: 600 DTVPGTVEVVEPEAGTVTTTVYSGTQEYTT 629
>SPAC1751.01c |gti1||gluconate transporter inducer
Gti1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 27.1 bits (57), Expect = 2.6
Identities = 21/75 (28%), Positives = 34/75 (45%)
Frame = +3
Query: 405 KTPTATIDFDQSSVSTTELIYKKETTPTVQEPTESPEKITSTSSKPLDAVHEQDLIPTST 584
+TP++ F Q ++S L YK P + E ES EKI+ S+ + P +
Sbjct: 315 QTPSSFNLFQQLTISKDLLEYKSFRIPPLVEAAES-EKISQLSTLEKRTLPSFPYNPFFS 373
Query: 585 TKTADISEQALEKFT 629
+ TA+I + T
Sbjct: 374 SSTAEIDPYHFQGLT 388
>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 782
Score = 27.1 bits (57), Expect = 2.6
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +3
Query: 24 PQXTPLITEVSTHKLIPELYEKSTEPPYVEPKDQ 125
P LI K+I ++YEK E P + KD+
Sbjct: 82 PNHESLIVSSDDQKIIDDIYEKFGEKPAEDTKDE 115
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 27.1 bits (57), Expect = 2.6
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = +3
Query: 474 ETTPTVQEPTESPEKITS-TSSKPLDAVHEQDLIPTSTTKTADISEQALEKFTKPDTKPS 650
E + VQE E +T+ T KP D + + + T+ ++ S + E+ PD K S
Sbjct: 383 EQSEVVQEVEEGDTNMTTNTILKPTDEIINKGYAYSITSSHSNHSNEKFEQIPSPDEKLS 442
Query: 651 ES 656
+
Sbjct: 443 RT 444
>SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 27.1 bits (57), Expect = 2.6
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +3
Query: 390 VDDSHKTPTATIDFDQSSVSTTELIYKKETTPTVQEPTE 506
+ S+ P T+ VST ++ KK + P +Q+P +
Sbjct: 86 IASSNNEPALTVTGAPKQVSTPDVSEKKPSMPVIQDPID 124
>SPAC17G6.09 |sec62||ER protein translocation subcomplex subunit
Sec62 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 273
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +3
Query: 408 TPTATIDFDQSSVSTTELIYKKETTPTVQEPTE 506
+P A+ ++SS STT L + PTV+E +E
Sbjct: 241 SPAASATPEKSSTSTTSLKNLRHRNPTVEEVSE 273
>SPCC1795.08c |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 985
Score = 26.2 bits (55), Expect = 4.5
Identities = 20/74 (27%), Positives = 34/74 (45%)
Frame = +3
Query: 432 DQSSVSTTELIYKKETTPTVQEPTESPEKITSTSSKPLDAVHEQDLIPTSTTKTADISEQ 611
+++ + T L +E T + P SPE I K +D ++ + PT+ K + +
Sbjct: 121 EETPLKETSLELSEEEIITSKSPIPSPETI----HKNIDVEEKETIEPTTPVKEVETTAH 176
Query: 612 ALEKFTKPDTKPSE 653
A E+ P T SE
Sbjct: 177 A-EEEKGPLTPDSE 189
>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1063
Score = 25.8 bits (54), Expect = 6.0
Identities = 10/32 (31%), Positives = 21/32 (65%)
Frame = -2
Query: 618 QELVQKCLRSS*LKLVLDLVHEQRLRVCSMLK 523
+EL ++ + S + LDL H+Q++ + S++K
Sbjct: 598 RELTERVMHSLMRPVPLDLPHDQKVMIASLIK 629
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +3
Query: 489 VQEPTESPEKITSTSSKPLDAVHEQDLIPTSTTKTAD 599
+ EP ++ +SSK +DA + ++I +S K D
Sbjct: 1628 IHEPVIDVDEFAISSSKDIDADEDLEIIGSSDNKAID 1664
>SPAC23G3.10c |ssr3||SWI/SNF and RSC complex subunit
Ssr3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 425
Score = 25.4 bits (53), Expect = 7.9
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +3
Query: 69 IPELYEKSTEPPYVEPKDQETTPYVVELEEHT-QKSELSTIYSTTQE 206
IPEL + ++EP D PY + + EHT +K + I T++
Sbjct: 268 IPELMNR-----FLEPIDPIVIPYTINVSEHTVEKVTIFDIRINTED 309
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.4 bits (53), Expect = 7.9
Identities = 17/66 (25%), Positives = 29/66 (43%)
Frame = +3
Query: 408 TPTATIDFDQSSVSTTELIYKKETTPTVQEPTESPEKITSTSSKPLDAVHEQDLIPTSTT 587
T T+ +SV++T +TP + + TSTSS PL +V+ S+T
Sbjct: 299 TATSASSTPLTSVNSTTTT-SASSTPLSSVSSANSTTATSTSSTPLSSVNSTTATSASST 357
Query: 588 KTADIS 605
++
Sbjct: 358 PLTSVN 363
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 25.4 bits (53), Expect = 7.9
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Frame = +3
Query: 465 YKKETTPTVQE---PTESPEKITSTSSKPLDA----VHEQDLIPTSTTKTADISEQALEK 623
Y KET PTV E T+ ++ + +S + + VH+++ T T+ +S +A++
Sbjct: 136 YTKETRPTVSEVRVSTKDKKEYSMNTSNLVQSNPPKVHDKENAFAEATGTSILSSKAVQT 195
Query: 624 FTKPDTKPSESPXH 665
D +E P H
Sbjct: 196 LLVSDFTENE-PKH 208
>SPAC4H3.01 |||DNAJ domain protein Caj1/Djp1
type|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 25.4 bits (53), Expect = 7.9
Identities = 16/78 (20%), Positives = 34/78 (43%)
Frame = +3
Query: 390 VDDSHKTPTATIDFDQSSVSTTELIYKKETTPTVQEPTESPEKITSTSSKPLDAVHEQDL 569
V + + + ++ Q + L+ E TPT+++ +K + A EQ++
Sbjct: 110 VKEMFREEDSAVEQGQMNDKQQLLLESSEPTPTIKQQFNDRKKNAQIREREALAKREQEM 169
Query: 570 IPTSTTKTADISEQALEK 623
I + +++E LEK
Sbjct: 170 IEDRRQRIKEVTEN-LEK 186
>SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 293
Score = 25.4 bits (53), Expect = 7.9
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +2
Query: 479 NSYCTRTNGISRKNHFNIEQTLRRCS*TRSNTNFNYEDRRH 601
N +R GIS K+H+ + + CS + F DRRH
Sbjct: 137 NYQSSRETGIS-KDHWKPDSDVSVCSFPSCSVRFGLFDRRH 176
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,668,552
Number of Sequences: 5004
Number of extensions: 52813
Number of successful extensions: 237
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -