Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0914
(700 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0099 - 5614007-5614233,5614725-5614998,5615086-5616179,561... 34 0.12
04_03_1036 - 21895764-21895817,21895928-21895975,21896051-218961... 33 0.22
02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,162... 32 0.50
12_02_0674 - 21745321-21746223,21746229-21747608 31 0.67
06_01_0926 - 7139220-7139318,7139394-7139478,7139573-7139643,713... 31 1.2
11_01_0768 - 6442332-6443792 29 4.7
03_01_0192 - 1534013-1535147,1535249-1535370,1535497-1535556,153... 29 4.7
08_01_0947 + 9399366-9399568,9399683-9399855,9400745-9401130,940... 28 8.2
03_06_0711 - 35682293-35682952 28 8.2
03_02_0812 - 11439258-11439409,11439537-11439612,11439860-114400... 28 8.2
02_05_0075 - 25610386-25610508,25610529-25610583,25610801-256112... 28 8.2
01_06_1225 - 35512211-35512240,35512762-35512850,35514162-355143... 28 8.2
>03_02_0099 -
5614007-5614233,5614725-5614998,5615086-5616179,
5616674-5616772,5617371-5617389
Length = 570
Score = 33.9 bits (74), Expect = 0.12
Identities = 19/44 (43%), Positives = 23/44 (52%)
Frame = +3
Query: 426 DFDQSSVSTTELIYKKETTPTVQEPTESPEKITSTSSKPLDAVH 557
D D SS +T ELIY P P E P+K +SSK D+ H
Sbjct: 429 DLDDSSSTTMELIYLA-AIPIPDTPDEQPDKCLGSSSKLEDSNH 471
>04_03_1036 -
21895764-21895817,21895928-21895975,21896051-21896154,
21896624-21896721,21897838-21897916,21898039-21898102,
21898176-21898294,21898434-21898686,21899273-21899279,
21899956-21900013,21900300-21900353,21900863-21901055
Length = 376
Score = 33.1 bits (72), Expect = 0.22
Identities = 19/52 (36%), Positives = 25/52 (48%)
Frame = +3
Query: 498 PTESPEKITSTSSKPLDAVHEQDLIPTSTTKTADISEQALEKFTKPDTKPSE 653
P P K TS S +D V + T T + AD++EQ +KF D P E
Sbjct: 147 PYSQPRKDTSPQSATVD-VSATKVEATGTLEEADVAEQPKKKFAFVDVSPEE 197
>02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,
1625603-1625887,1626016-1626030,1626339-1626419,
1626909-1627322,1627423-1627719,1627801-1629864
Length = 3057
Score = 31.9 bits (69), Expect = 0.50
Identities = 23/80 (28%), Positives = 34/80 (42%)
Frame = +3
Query: 417 ATIDFDQSSVSTTELIYKKETTPTVQEPTESPEKITSTSSKPLDAVHEQDLIPTSTTKTA 596
+ +D + E + + T T + P E+PE I STS + L E +T K A
Sbjct: 1489 SALDVYTQQIPEQESVEDMKCTDTTEHPGETPESIVSTSDE-LTKTGE-----ITTVKEA 1542
Query: 597 DISEQALEKFTKPDTKPSES 656
Q + FT +T S S
Sbjct: 1543 TFDTQQAQSFTDQETDLSSS 1562
>12_02_0674 - 21745321-21746223,21746229-21747608
Length = 760
Score = 31.5 bits (68), Expect = 0.67
Identities = 52/218 (23%), Positives = 82/218 (37%), Gaps = 5/218 (2%)
Frame = +3
Query: 18 AQPQXTPLITEVSTHKLIPELYEKSTEPPYVEPKDQETTPYVVELEEHTQKSELSTIYST 197
A + TP ++ LI E + PY+EP P L S S I +T
Sbjct: 412 APKKITPTPPTLAPPPLISPKEETPSPSPYIEPPKSSPPPVKFPLPPVPLSSSTSEIPTT 471
Query: 198 --TQETTSASXXXXXXXXXXXXXXXXASKEQHPT-EMDSSKDSEETSTQY-KIPXXXXXX 365
T E ++AS + PT ++ S+ + E ST KIP
Sbjct: 472 TGTSELSTASTGELPSPTVKIPTTACTGELSTPTSQIPSTASTRELSTATGKIP---STP 528
Query: 366 XXXXXXXAVDDSHKTPTATIDFDQSSVSTTELIYKKETTPTVQEPTESPEKITSTS-SKP 542
A TP ++ S ST+++ +TP+ E + + KI ST+ + P
Sbjct: 529 RTNPLSTATSKIPSTPRTSL----LSSSTSKI----PSTPSTCELSTATGKIPSTTCTSP 580
Query: 543 LDAVHEQDLIPTSTTKTADISEQALEKFTKPDTKPSES 656
L + +ST T+ +S + + P T P S
Sbjct: 581 LSTATGK---TSSTPSTSPLSTSTSKTSSTPSTSPLSS 615
>06_01_0926 -
7139220-7139318,7139394-7139478,7139573-7139643,
7139996-7140076,7140805-7140895,7141242-7141330,
7141749-7141802,7141906-7142085,7142175-7142237,
7142575-7142705,7142807-7142900,7143343-7143684,
7143957-7144348,7145010-7148487,7149101-7149187,
7149324-7149367,7149495-7149591,7150429-7150572
Length = 1873
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +3
Query: 474 ETTPTVQEPTESPEKITSTSSKPLDAVHEQDLIPTSTTKTADIS 605
E P EP+E P + T+ KPL + + STTK +D+S
Sbjct: 765 EKLPQTNEPSEQPHESEETAEKPL----QNEANAESTTKQSDLS 804
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +3
Query: 501 TESPEKITSTSSK-PLDAVHEQDLIPTSTTKTADISEQALEKFTKPDTKPSES 656
TE+ +I+ ++ K PL A Q T +DI A + T+P KPSE+
Sbjct: 637 TENSSQISESAKKLPLTANKSQADTSTEKLSESDILAVASSQITEPSKKPSEN 689
>11_01_0768 - 6442332-6443792
Length = 486
Score = 28.7 bits (61), Expect = 4.7
Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
Frame = +3
Query: 396 DSHKTPTATIDFDQSSVSTTELIYKKETTPTVQEPTESPEKIT--STSSKPLDAVHEQDL 569
D +P A D ++ + KET+P + ++ ST+ K E
Sbjct: 305 DKETSPAAESTADTATSAAAGPTADKETSPAAESTADTATSAAAGSTADKETSLAAE--- 361
Query: 570 IPTSTTKTADISEQALEKFTKPDTKPS 650
PT+ T T+ ++ +K T P +P+
Sbjct: 362 -PTADTATSAVAGSTADKETSPAAEPT 387
>03_01_0192 -
1534013-1535147,1535249-1535370,1535497-1535556,
1535666-1535764,1535839-1535889,1535974-1536175,
1536709-1536911,1537264-1537350,1537435-1537589,
1537640-1537723,1538121-1538325,1538497-1538724
Length = 876
Score = 28.7 bits (61), Expect = 4.7
Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Frame = +3
Query: 393 DDSHKTPTATIDFDQSSVSTTELIYKKETTPTVQEPTESPEKITSTSSKPLDAVHEQDLI 572
DD +K P AT+ D + E + E T++ E+ +S SK + + +
Sbjct: 544 DDLNKVPLATVTADDARTRVNYSKNTMEASGASTENTQASEQSSSDDSKETEQQDDFTRV 603
Query: 573 PTSTTKTADIS--EQALEKF 626
+ T+ + + E A E+F
Sbjct: 604 EGANTQEVECNSPEMATERF 623
>08_01_0947 +
9399366-9399568,9399683-9399855,9400745-9401130,
9401791-9402090,9402177-9402266,9403213-9403336,
9403452-9403615,9404572-9404802
Length = 556
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -1
Query: 148 STTYGVVS*SFGSTYGGSVDFSYSSGINLCVDTSVI 41
S +GV+S FGS+ GG + SY G ++ S I
Sbjct: 98 SNFFGVLSPVFGSSSGGRKEKSYGRGAAAAIEDSSI 133
>03_06_0711 - 35682293-35682952
Length = 219
Score = 27.9 bits (59), Expect = 8.2
Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 4/64 (6%)
Frame = +3
Query: 486 TVQEPTESPEKITSTSSKPL--DAVHEQD--LIPTSTTKTADISEQALEKFTKPDTKPSE 653
+ + P P T+S P + +H D L P+ A S AL P+T P
Sbjct: 24 SAESPISLPPASAPTASTPAADERLHPADAALAPSQPPSEASSSAAALSPPAPPETSPLP 83
Query: 654 SPXH 665
+P H
Sbjct: 84 APSH 87
>03_02_0812 -
11439258-11439409,11439537-11439612,11439860-11440076,
11440150-11440350,11440673-11440872,11440955-11441075,
11441596-11441636,11441714-11441822,11442037-11442281,
11442382-11442496,11442970-11443064,11444279-11444535,
11444780-11444999,11445473-11445556
Length = 710
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 33 TPLITEVSTHKLIPELYEKSTEPP 104
TPLI E+ +++ PELYE P
Sbjct: 601 TPLIHEIDQNRIAPELYEAGGRGP 624
>02_05_0075 -
25610386-25610508,25610529-25610583,25610801-25611240,
25612951-25613619,25614551-25615870
Length = 868
Score = 27.9 bits (59), Expect = 8.2
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = +3
Query: 438 SSVSTTELIYKKETTPTVQEPTESPEKITSTSSKPLDAVHEQDLIP 575
S+ T + + ++ P Q+PTE ++T KPL V EQD IP
Sbjct: 311 SAPPTPDESHTQQAQPQPQQPTEES---SNTEPKPLLFVAEQDGIP 353
>01_06_1225 -
35512211-35512240,35512762-35512850,35514162-35514312,
35514946-35515011,35515517-35515583,35516517-35516590
Length = 158
Score = 27.9 bits (59), Expect = 8.2
Identities = 9/41 (21%), Positives = 23/41 (56%)
Frame = +1
Query: 73 RSYMKSPLSHHMLNQRIRRQLHMLLN*RNILKNQNCPPFIP 195
R Y+ L+ H+ ++ +++++ LN +++ + CP P
Sbjct: 53 RQYLWKKLASHLFRRKFAKKIYVKLNFLSVVSDTTCPTQYP 93
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,311,249
Number of Sequences: 37544
Number of extensions: 297532
Number of successful extensions: 850
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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