Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0913
         (600 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC365.08c |||Der1-like |Schizosaccharomyces pombe|chr 2|||Manual     51   1e-07
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    33   0.042
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    29   0.69 
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    27   2.8  
SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase |Schizosac...    26   4.8  
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    26   4.8  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    26   4.8  
SPAC1002.20 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   6.4  
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   6.4  
SPAC17G8.11c |||mannosyltransferase complex subunit |Schizosacch...    25   8.5  
SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|...    25   8.5  
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|...    25   8.5  
SPAP14E8.04 |oma1||metallopeptidase Oma1 |Schizosaccharomyces po...    25   8.5  

>SPBC365.08c |||Der1-like |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 224

 Score = 51.2 bits (117), Expect = 1e-07
 Identities = 31/101 (30%), Positives = 47/101 (46%)
 Frame = +1

Query: 211 EFRDWYNGVPFFTRYWMTFTIVLSLFGKFGLVSPYYFILDFYYFFNQFQIWRPLTALFYY 390
           + ++  + +P  TRY +  T   ++     L+SP   +L +     Q Q +R  T   Y 
Sbjct: 8   QIQELLSRIPPVTRYILLGTAATTILTLCQLLSPSMLVLHYPLVVRQKQWYRLFTNYLY- 66

Query: 391 PINPGTGFHFLINCYFLYNYSQRLETGMFAGKPADYFYMLL 513
               GTGF F++N YF Y YS  LE  +FA     Y   L+
Sbjct: 67  ---AGTGFDFIMNIYFFYQYSTYLENFVFARNAKKYIIYLV 104


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 32.7 bits (71), Expect = 0.042
 Identities = 13/48 (27%), Positives = 28/48 (58%)
 Frame = -3

Query: 493  QLASLQTCQSQVFESSCTKSNSLSGNEILCLDLLDSKTKLLMDAISEI 350
            ++  L TC + +FES C+++ +   N + C+D   +  K+L++   +I
Sbjct: 1097 KMLDLTTCINGIFESLCSENENTRSNALSCIDHYLNAHKMLLNTTLDI 1144


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 28.7 bits (61), Expect = 0.69
 Identities = 16/74 (21%), Positives = 31/74 (41%)
 Frame = +3

Query: 240 VFHQILDDFYYCIEFVW*IWACKPLLFYTGFLLFLQSISDMASINSFVLLSNKSRHRISF 419
           + +++L  FY        IW C   +FY+  ++F+ S S   S+       N+    I  
Sbjct: 195 LLNEVLHPFYLFQAVSVLIWLCDSFVFYSCCIVFISSYSIFLSVKESKESENRIHSIIGA 254

Query: 420 PDKLLLFVQLLSKT 461
           P  + +    + +T
Sbjct: 255 PQPVTVIRNQVKQT 268


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
 Frame = +1

Query: 325 LDFYYFFNQFQIWRPL----TALFYYPINPGTGFHFLINCYFLYNYSQRLETGMFAGKPA 492
           LD++  F+  + W+ L    + L+  P N    F  L+   F+ +Y       +FA +  
Sbjct: 595 LDYFLLFD-LKFWKRLRGLLSKLYVVPFNRNLLFKRLMGIRFVIHYRSLATAFLFADREP 653

Query: 493 DYFYMLL 513
           D+  M L
Sbjct: 654 DHSVMFL 660


>SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 361 WRPLTALFYYPINPGTGFHFLINCYFLYNY 450
           W+ L AL   PI     F+ L+ CY++Y+Y
Sbjct: 446 WKLLVALGMTPIL--YSFYALLCCYYIYSY 473


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 192  KILENVGIPRLVQWCTVFH 248
            +ILE  G+ + VQWC   H
Sbjct: 1095 EILETRGVKKTVQWCEEMH 1113


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
            Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
 Frame = +1

Query: 235  VPFFTRYWMTFTIVLSLFGKFGLVS-PYYFI---LDFYYFFNQFQIWRP 369
            VP+ TR ++TF+I   L+ + G++S P        +  Y +N   IW P
Sbjct: 1173 VPYNTRNFITFSIPRLLYEQGGILSVPGLNTSRGFETKYLYNLMNIWNP 1221


>SPAC1002.20 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 409 GFHFLINCYFLYNYSQRLETGMFAGKPADYFY 504
           GFH LIN YF  +Y   +   + A   +DY Y
Sbjct: 10  GFHRLINFYFYPSYHDTVVHNL-AFSTSDYIY 40


>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 547

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -1

Query: 306 YKPKFTKQTQYNSKSHPISGEKRY 235
           YK +      YN+KS  I  EKRY
Sbjct: 10  YKYRHLNLEAYNAKSRAIENEKRY 33


>SPAC17G8.11c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +1

Query: 133 DIYDIVLCINKSVCANEIIRKSWKMSEFRDWYNG 234
           D+Y+  +  N+S    +II ++WK +E  + + G
Sbjct: 43  DVYNHEIYSNQSAAIPKIIHQTWKTNEIPEKWVG 76


>SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 104

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +1

Query: 490 ADYFYMLLFNWVCCVIIGLLAKLPI 564
           ++Y Y+L   W+ C  I L    P+
Sbjct: 39  SNYLYLLYKAWIVCTTISLCCDFPL 63


>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 512

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +3

Query: 327 GFLLFLQSISDMASINSFVL--LSNKSRHRISFPDK 428
           G +L + SI    S+ +F    L  KS+H+IS P+K
Sbjct: 431 GNVLLMTSIDGFCSVITFEPGELGVKSQHKISLPEK 466


>SPAP14E8.04 |oma1||metallopeptidase Oma1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 337

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 415 HFLINCYFLYNYSQRLETGMFAGKPADYFYMLLFNWVC 528
           HFL+N   L  +S+++ET       ADY  ++L +  C
Sbjct: 234 HFLLNFGLLLPFSRKMET------EADYIGLMLMSQAC 265


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,620,034
Number of Sequences: 5004
Number of extensions: 57580
Number of successful extensions: 177
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)