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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0913
         (600 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0709 - 35670153-35670350,35671206-35671259,35672444-356725...    70   1e-12
05_01_0594 - 5337804-5337976,5338282-5338436,5338591-5338745,533...    59   3e-09
12_02_0811 - 23370455-23370472,23372279-23372538,23372645-233727...    29   3.8  
08_02_0076 + 11967606-11967905,11969125-11969223,11969813-119741...    29   3.8  
11_03_0226 - 11908455-11908562,11915971-11916240,11916463-119169...    28   5.0  
05_03_0355 - 12885898-12886290,12886351-12886644,12886744-128868...    28   5.0  
08_02_1544 + 27787089-27787172,27787448-27787612,27787741-277878...    27   8.7  
05_03_0089 - 8327044-8327142,8327238-8327306,8327413-8327504,832...    27   8.7  

>03_06_0709 -
           35670153-35670350,35671206-35671259,35672444-35672527,
           35672688-35672902,35673959-35674058,35674178-35674276
          Length = 249

 Score = 70.1 bits (164), Expect = 1e-12
 Identities = 33/99 (33%), Positives = 53/99 (53%)
 Frame = +1

Query: 220 DWYNGVPFFTRYWMTFTIVLSLFGKFGLVSPYYFILDFYYFFNQFQIWRPLTALFYYPIN 399
           +WY  +P  TR ++T  +V ++     ++SPY+  L+       ++IWR +T   Y+   
Sbjct: 7   EWYRQMPIITRSYLTAAVVTTVGCTLEIISPYHLYLNPKLVVQHYEIWRLVTNFLYF--- 63

Query: 400 PGTGFHFLINCYFLYNYSQRLETGMFAGKPADYFYMLLF 516
                 FL + +FL  Y + LE   F G+ AD+FYMLLF
Sbjct: 64  RKMDLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLF 102


>05_01_0594 -
           5337804-5337976,5338282-5338436,5338591-5338745,
           5338864-5338992,5339096-5339189,5339293-5339366,
           5339716-5339851,5341546-5341562
          Length = 310

 Score = 58.8 bits (136), Expect = 3e-09
 Identities = 35/134 (26%), Positives = 65/134 (48%), Gaps = 2/134 (1%)
 Frame = +1

Query: 205 MSEFRDWYNGVPFFTRYWMTFTIVLSLFGKFGLVSPYYFILDFYYFFNQFQIWRPLTALF 384
           MS   ++YN +P  ++ + T     ++  +  +++P +  L + + F +FQIWR  T+ F
Sbjct: 1   MSSPAEYYNSLPPISKAYGTLCFFATVLCQLQILNPPFLALYYPFVFKKFQIWRLFTSFF 60

Query: 385 YYPINPGTGFHFLINCYFLYNYSQRLETGMFAGKPADYFYMLLFNWVCCVIIGLLAKLPI 564
           +         +F I    +  Y  +LE G F  + AD+ +M++F  +  + +  +  L I
Sbjct: 61  FL---GKFSINFGIRLLMIARYGVQLEKGAFEKRTADFLWMMIFGAISLLALSAIPFLDI 117

Query: 565 --LMDPMALSALYV 600
             L  PM    LYV
Sbjct: 118 YFLGVPMVSMLLYV 131


>12_02_0811 -
           23370455-23370472,23372279-23372538,23372645-23372713,
           23372979-23373105,23373187-23373422,23373509-23373678,
           23373855-23373935,23374013-23374084,23374273-23374344,
           23374450-23374588,23375141-23375643,23376817-23377010,
           23377952-23378488
          Length = 825

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
 Frame = +1

Query: 337 YFFNQFQIWRPLT--ALFYYPINP 402
           + FN++Q WRP +   LF YP +P
Sbjct: 226 FAFNRYQFWRPASYYKLFRYPFDP 249


>08_02_0076 + 11967606-11967905,11969125-11969223,11969813-11974124,
            11974177-11974211
          Length = 1581

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +2

Query: 464  RLACLQGSQLTISTCFCLIGCAVL-SLDYLPNC 559
            +LACL  S  T     C+I C +L S++ LP+C
Sbjct: 1274 KLACLDLSSCTALEKLCVIDCRLLQSIEGLPSC 1306


>11_03_0226 -
           11908455-11908562,11915971-11916240,11916463-11916946,
           11917148-11918060,11918628-11919300
          Length = 815

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -3

Query: 448 SCTKSNSLSGNEILCLDLLDSKTK 377
           SCTKS +L GN +L   ++DS  K
Sbjct: 133 SCTKSTNLKGNGLLARRIVDSVAK 156


>05_03_0355 -
           12885898-12886290,12886351-12886644,12886744-12886871,
           12886952-12888482
          Length = 781

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -3

Query: 448 SCTKSNSLSGNEILCLDLLDSKTK 377
           SCTKS +L GN +L   ++DS  K
Sbjct: 143 SCTKSTNLKGNGLLARRIVDSVAK 166


>08_02_1544 +
           27787089-27787172,27787448-27787612,27787741-27787850,
           27788360-27788513,27788643-27788937,27788996-27789798
          Length = 536

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +1

Query: 298 GLVSPYYFILDFYYFFNQFQIWRPLTALFYY 390
           G  + Y F+   ++FF +  I +P++ +FY+
Sbjct: 470 GCSAVYLFLYATFFFFAKLSIVKPVSVMFYF 500


>05_03_0089 -
           8327044-8327142,8327238-8327306,8327413-8327504,
           8327932-8329042
          Length = 456

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +1

Query: 484 KPADYFYMLLFNWVCCVIIGLLAKL 558
           KPA Y    L NW C +IIG+L  L
Sbjct: 412 KPAKYSLSWLMNW-CFIIIGMLLML 435


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,168,997
Number of Sequences: 37544
Number of extensions: 297265
Number of successful extensions: 675
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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