Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0913
         (600 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_1368| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.9  
SB_29101| Best HMM Match : 7tm_1 (HMM E-Value=0)                       28   6.6  
SB_4960| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.6  
SB_1653| Best HMM Match : ABC_tran (HMM E-Value=0)                     28   6.6  
SB_18818| Best HMM Match : Peptidase_C1 (HMM E-Value=1.1e-39)          27   8.8  

>SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1974

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/24 (54%), Positives = 18/24 (75%), Gaps = 2/24 (8%)
 Frame = -1

Query: 312  RAYKPKFTKQTQ--YNSKSHPISG 247
            ++Y P  T QTQ  YNS+S+P+SG
Sbjct: 1820 QSYAPSATSQTQTSYNSQSYPVSG 1843


>SB_1368| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 85

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = -1

Query: 498 IVSWLPCKHASLKSLRVVVQKVTVYQEMKSCAWIYWIVKQSC 373
           +  WLPC HA LK    V  ++   Q M+    +     +SC
Sbjct: 29  LTDWLPCYHAELKGAEDVPNEIWHQQRMRDALILQDPEHESC 70


>SB_29101| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 350

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +1

Query: 253 YWMTFTIVLSLFGKFGLVS-PYYFILDF 333
           Y+M FT+++  FG  G ++  YY IL F
Sbjct: 167 YYMFFTVIICFFGPLGTMAFCYYKILSF 194


>SB_4960| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 105

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 539 LDYLPNCQY*WTRWHSRH 592
           LDYLP C + W R  +RH
Sbjct: 29  LDYLPKCYHVWLRQPNRH 46


>SB_1653| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 1702

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 226  YNGVPFFTRYWMTFTIVLSLF 288
            Y  VP F  YW+   ++L LF
Sbjct: 1231 YTIVPIFANYWLAIVVILPLF 1251


>SB_18818| Best HMM Match : Peptidase_C1 (HMM E-Value=1.1e-39)
          Length = 504

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 290 PNKLNTIVKVIQYLVKNGTPLYQSRN 213
           P+ LN  V ++ Y VKNGTP +  +N
Sbjct: 375 PSSLNHGVLIVGYGVKNGTPYWIIKN 400


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,660,812
Number of Sequences: 59808
Number of extensions: 380683
Number of successful extensions: 856
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)