Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0913
         (600 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78418-1|CAB01696.1|  245|Caenorhabditis elegans Hypothetical pr...   142   2e-34
U00036-12|AAK29854.2|  237|Caenorhabditis elegans Hypothetical p...    70   1e-12
AF143152-1|AAD37863.1|  237|Caenorhabditis elegans putative NADH...    70   1e-12
Z81030-14|CAJ43441.1|   75|Caenorhabditis elegans Hypothetical p...    31   0.83 
Z49909-3|CAA90107.2|  603|Caenorhabditis elegans Hypothetical pr...    28   4.4  
Z82095-2|CAB05027.2|  602|Caenorhabditis elegans Hypothetical pr...    27   7.7  
AF016683-5|AAB66196.2| 1010|Caenorhabditis elegans Hypothetical ...    27   7.7  

>Z78418-1|CAB01696.1|  245|Caenorhabditis elegans Hypothetical
           protein F25D7.1 protein.
          Length = 245

 Score =  142 bits (344), Expect = 2e-34
 Identities = 57/123 (46%), Positives = 82/123 (66%)
 Frame = +1

Query: 232 GVPFFTRYWMTFTIVLSLFGKFGLVSPYYFILDFYYFFNQFQIWRPLTALFYYPINPGTG 411
           G+P  TRYW   + ++ L G+FG ++  +  L +    N+FQ WRPLTAL YYP+ P TG
Sbjct: 9   GIPIVTRYWFLASTIIPLLGRFGFINVQWMFLQWDLVVNKFQFWRPLTALIYYPVTPQTG 68

Query: 412 FHFLINCYFLYNYSQRLETGMFAGKPADYFYMLLFNWVCCVIIGLLAKLPILMDPMALSA 591
           FH+L+ CYFLYNYS+ LE+  + G+ ADY +ML+FNW  C  + +   +  L++PM +S 
Sbjct: 69  FHWLMMCYFLYNYSKALESETYRGRSADYLFMLIFNWFFCSGLCMALDIYFLLEPMVISV 128

Query: 592 LYV 600
           LYV
Sbjct: 129 LYV 131


>U00036-12|AAK29854.2|  237|Caenorhabditis elegans Hypothetical
           protein R151.6 protein.
          Length = 237

 Score = 69.7 bits (163), Expect = 1e-12
 Identities = 33/122 (27%), Positives = 60/122 (49%)
 Frame = +1

Query: 235 VPFFTRYWMTFTIVLSLFGKFGLVSPYYFILDFYYFFNQFQIWRPLTALFYYPINPGTGF 414
           +P  TR++    ++L+       V+P++   ++     ++Q WR +T+  ++      GF
Sbjct: 11  MPPVTRFYTGACVLLTTAVHLEFVTPFHLYFNWELIIRKYQFWRLITSFCFFG---SFGF 67

Query: 415 HFLINCYFLYNYSQRLETGMFAGKPADYFYMLLFNWVCCVIIGLLAKLPILMDPMALSAL 594
            FL N  F Y Y   LE G F G+ AD+ YM LF  V  ++ G+  ++  L     +  +
Sbjct: 68  SFLFNMIFTYRYCMMLEEGSFRGRRADFVYMFLFGAVLMILSGIFVQILFLGQAFTIMLV 127

Query: 595 YV 600
           Y+
Sbjct: 128 YI 129


>AF143152-1|AAD37863.1|  237|Caenorhabditis elegans putative NADH
           oxidoreductase complexI subunit protein.
          Length = 237

 Score = 69.7 bits (163), Expect = 1e-12
 Identities = 33/122 (27%), Positives = 60/122 (49%)
 Frame = +1

Query: 235 VPFFTRYWMTFTIVLSLFGKFGLVSPYYFILDFYYFFNQFQIWRPLTALFYYPINPGTGF 414
           +P  TR++    ++L+       V+P++   ++     ++Q WR +T+  ++      GF
Sbjct: 11  MPPVTRFYTGACVLLTTAVHLEFVTPFHLYFNWELIIRKYQFWRLITSFCFFG---SFGF 67

Query: 415 HFLINCYFLYNYSQRLETGMFAGKPADYFYMLLFNWVCCVIIGLLAKLPILMDPMALSAL 594
            FL N  F Y Y   LE G F G+ AD+ YM LF  V  ++ G+  ++  L     +  +
Sbjct: 68  SFLFNMIFTYRYCMMLEEGSFRGRRADFVYMFLFGAVLMILSGIFVQILFLGQAFTIMLV 127

Query: 595 YV 600
           Y+
Sbjct: 128 YI 129


>Z81030-14|CAJ43441.1|   75|Caenorhabditis elegans Hypothetical
           protein C01G10.17 protein.
          Length = 75

 Score = 30.7 bits (66), Expect = 0.83
 Identities = 15/55 (27%), Positives = 24/55 (43%)
 Frame = +1

Query: 268 TIVLSLFGKFGLVSPYYFILDFYYFFNQFQIWRPLTALFYYPINPGTGFHFLINC 432
           T++ +L   F     YY    +YY  N +      T  +YYP N   G+++   C
Sbjct: 5   TLIATLLVLFAATDAYYTY--YYYPNNNYNNNNGYTTYYYYPNNNNNGYYYNNGC 57


>Z49909-3|CAA90107.2|  603|Caenorhabditis elegans Hypothetical
           protein C14A4.3 protein.
          Length = 603

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 8/27 (29%), Positives = 18/27 (66%)
 Frame = +1

Query: 361 WRPLTALFYYPINPGTGFHFLINCYFL 441
           W+P+ +L +  ++  TGFH L+  +++
Sbjct: 556 WKPVDSLPFIDVSKSTGFHGLLRAFYV 582


>Z82095-2|CAB05027.2|  602|Caenorhabditis elegans Hypothetical
           protein ZK849.4 protein.
          Length = 602

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +1

Query: 424 INCYFLYNYSQRLETGMFAGKPADYFYMLLFNWVCCVIIGLLAKLPILMDPM 579
           I  YFL     R    M   K  DY++ L+ +     I+G +    IL++PM
Sbjct: 328 IRFYFLVCLFTRQHLDMDDKKSIDYYFPLMTSLQFIFIVGWMKVAEILLNPM 379


>AF016683-5|AAB66196.2| 1010|Caenorhabditis elegans Hypothetical
           protein K09F6.6 protein.
          Length = 1010

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = -3

Query: 529 STPN*TKACRNSQLASLQTCQSQVFESSCTKSNSLSG--NEILCLDLLDSKTKL 374
           ST N +K C NS+      CQ  V ES    + S+     ++L    LD K ++
Sbjct: 164 STLNNSKLCTNSECQRFSMCQKNVSESKTIVTFSIRSQMKDLLNSGALDKKLEI 217


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,241,692
Number of Sequences: 27780
Number of extensions: 309232
Number of successful extensions: 951
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)