Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0913
         (600 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   3.0  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    22   4.0  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    22   5.3  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    22   5.3  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    22   5.3  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   7.0  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -1

Query: 525 HPIKQKHVEIVSWLPCKHASLKSLRVVVQKVTVY 424
           H + Q    +   L C  ASLK+ +VV+   + Y
Sbjct: 27  HQLLQTEAFVDVTLACNEASLKAHKVVLSACSSY 60


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +2

Query: 104 KKINENSEKPIFMTLYCVLINQFVPTK*SENL 199
           K  N  +  P+F T++ + I + +P +  ENL
Sbjct: 312 KAKNMENRFPLFTTVHRICIGETMPMELIENL 343


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 206 IFQDFLIISLAQTDLLI 156
           I Q+F I+SLA  DL +
Sbjct: 69  IVQNFFIVSLAVADLAV 85


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 206 IFQDFLIISLAQTDLLI 156
           I Q+F I+SLA  DL +
Sbjct: 69  IVQNFFIVSLAVADLAV 85


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 206 IFQDFLIISLAQTDLLI 156
           I Q+F I+SLA  DL +
Sbjct: 69  IVQNFFIVSLAVADLAV 85


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 10/43 (23%), Positives = 19/43 (44%)
 Frame = -1

Query: 303 KPKFTKQTQYNSKSHPISGEKRYTIVPISEFRHFPRFSDYFVG 175
           +P F+    Y     P   +K   ++ ++E   F +   +FVG
Sbjct: 33  QPSFSVHQVYPENLIPRLAKKAIQVLGVTEKEFFDQMGVHFVG 75


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,540
Number of Sequences: 438
Number of extensions: 4191
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)