Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0913
         (600 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g04860.1 68417.m00708 Der1-like family protein / degradation ...    68   4e-12
At4g21810.1 68417.m03155 Der1-like family protein / degradation ...    68   5e-12
At4g29330.1 68417.m04191 Der1-like family protein / degradation ...    60   8e-10
At5g22940.1 68418.m02682 exostosin family protein contains Pfam ...    33   0.14 
At2g01390.1 68415.m00056 pentatricopeptide (PPR) repeat-containi...    29   2.4  
At3g58460.1 68416.m06516 rhomboid family protein / ubiquitin-ass...    28   5.4  
At1g61670.1 68414.m06956 expressed protein similar to membrane p...    28   5.4  
At5g17680.1 68418.m02072 disease resistance protein (TIR-NBS-LRR...    27   7.2  
At4g23160.1 68417.m03342 protein kinase family protein contains ...    27   7.2  
At5g25100.1 68418.m02974 endomembrane protein 70, putative TM4 f...    27   9.5  

>At4g04860.1 68417.m00708 Der1-like family protein / degradation in
           the ER-like family protein contains Pfam profile:
           PF04511 Der1-like family
          Length = 244

 Score = 68.1 bits (159), Expect = 4e-12
 Identities = 32/99 (32%), Positives = 51/99 (51%)
 Frame = +1

Query: 220 DWYNGVPFFTRYWMTFTIVLSLFGKFGLVSPYYFILDFYYFFNQFQIWRPLTALFYYPIN 399
           +WY  +P  TR ++T  ++ ++     ++SPY   L+      Q+Q WR +T   Y+   
Sbjct: 7   EWYKQMPIITRSYLTAAVITTVGCSLDIISPYNLYLNPTLVVKQYQYWRLVTNFLYF--- 63

Query: 400 PGTGFHFLINCYFLYNYSQRLETGMFAGKPADYFYMLLF 516
                 F+ + +FL  Y + LE   F GK AD+ YMLLF
Sbjct: 64  RKMDLDFMFHMFFLARYCKLLEENSFRGKTADFLYMLLF 102


>At4g21810.1 68417.m03155 Der1-like family protein / degradation in
           the ER-like family protein contains Pfam profile:
           PF04511 Der1-like family
          Length = 244

 Score = 67.7 bits (158), Expect = 5e-12
 Identities = 33/99 (33%), Positives = 50/99 (50%)
 Frame = +1

Query: 220 DWYNGVPFFTRYWMTFTIVLSLFGKFGLVSPYYFILDFYYFFNQFQIWRPLTALFYYPIN 399
           +WY  +P  TR ++T  +V ++     ++SPY   L+      Q+Q WR +T   Y+   
Sbjct: 7   EWYKQMPIITRSYLTAAVVTTVGCSLEIISPYNLYLNPTLVVKQYQFWRLVTNFLYF--- 63

Query: 400 PGTGFHFLINCYFLYNYSQRLETGMFAGKPADYFYMLLF 516
                 FL + +FL  Y + LE   F GK  D+ YMLLF
Sbjct: 64  RKMDLDFLFHMFFLARYCKLLEENSFRGKTTDFLYMLLF 102


>At4g29330.1 68417.m04191 Der1-like family protein / degradation in
           the ER-like family protein contains Pfam profile:
           PF04511 Der1-like family
          Length = 266

 Score = 60.5 bits (140), Expect = 8e-10
 Identities = 33/115 (28%), Positives = 58/115 (50%)
 Frame = +1

Query: 205 MSEFRDWYNGVPFFTRYWMTFTIVLSLFGKFGLVSPYYFILDFYYFFNQFQIWRPLTALF 384
           MS   ++YN +P  T+ + T     ++  + GLV+P +  L       QFQIWR +T LF
Sbjct: 1   MSSPGEFYNSLPPITKAYGTLCFFTTVATQLGLVAPVHIALIPELVLKQFQIWRLITNLF 60

Query: 385 YYPINPGTGFHFLINCYFLYNYSQRLETGMFAGKPADYFYMLLFNWVCCVIIGLL 549
           +     G   +F I    +  Y  +LE G F  + AD+ +M++F     +++ ++
Sbjct: 61  FL---GGFSINFGIRLLMIARYGVQLEKGPFERRTADFLWMMIFGSFTLLVLSVI 112


>At5g22940.1 68418.m02682 exostosin family protein contains Pfam
           profile: PF03016 exostosin family
          Length = 469

 Score = 33.1 bits (72), Expect = 0.14
 Identities = 18/58 (31%), Positives = 30/58 (51%)
 Frame = +3

Query: 264 FYYCIEFVW*IWACKPLLFYTGFLLFLQSISDMASINSFVLLSNKSRHRISFPDKLLL 437
           F++   + W +W C  L F+T +     S+ D +S +S  LLSN  +   S P + L+
Sbjct: 41  FFFRNYYTWILWFCLSLYFFTSYF----SVEDQSSPSSIRLLSN-HKTSSSLPSRALI 93


>At2g01390.1 68415.m00056 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 577

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 15/56 (26%), Positives = 29/56 (51%)
 Frame = +1

Query: 157 INKSVCANEIIRKSWKMSEFRDWYNGVPFFTRYWMTFTIVLSLFGKFGLVSPYYFI 324
           IN+ + A+  ++K+W    F +W   +  F     T+T +L +FG+ G +   Y +
Sbjct: 92  INRVLKAHPPMQKAWL---FFNWAAQIKGFKHDHFTYTTMLDIFGEAGRIQSMYSV 144


>At3g58460.1 68416.m06516 rhomboid family protein /
           ubiquitin-associated (UBA)/TS-N domain-containing
           protein contains Pfam profiles PF01694: Rhomboid family,
           PF00627: UBA/TS-N domain
          Length = 403

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 21/95 (22%), Positives = 39/95 (41%), Gaps = 1/95 (1%)
 Frame = +1

Query: 184 IIRKSWKMSEFRDWYNGVPFFTRYWMTFTIVLSLFGKFGLVSPYYFILDF-YYFFNQFQI 360
           I+ ++   +    W+N +PF T   +    V+ L         +Y +        ++FQ+
Sbjct: 5   IVTEAGVQTRVGQWWNAIPFLTSSVVVVCGVIYLICLLTGYDTFYEVCFLPSAIISRFQV 64

Query: 361 WRPLTALFYYPINPGTGFHFLINCYFLYNYSQRLE 465
           +R  TA+ ++    G+  H L N   L      LE
Sbjct: 65  YRFYTAIIFH----GSLLHVLFNMMALVPMGSELE 95


>At1g61670.1 68414.m06956 expressed protein similar to membrane
           protein PTM1 precursor isolog GI:1931644 from
           [Arabidopsis thaliana]
          Length = 513

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +1

Query: 274 VLSLFGKFGLVSPYYFILDFYYFFNQFQIWRPLTALFYY 390
           V  L   FG +S  Y +L   +F    Q W+ +  L Y+
Sbjct: 216 VAPLMNVFGFMSLAYILLGLVWFVRFVQFWKDIIQLHYH 254


>At5g17680.1 68418.m02072 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1294

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/42 (35%), Positives = 26/42 (61%)
 Frame = -2

Query: 311 GLTSPNLPNKLNTIVKVIQYLVKNGTPLYQSRNSDIFQDFLI 186
           G T  +LPN L+ + + ++YL  +G PL ++  S  F +FL+
Sbjct: 565 GETRVHLPNGLSYLPRKLRYLRWDGYPL-KTMPSRFFPEFLV 605


>At4g23160.1 68417.m03342 protein kinase family protein contains
           Pfam domain PF00069: Protein kinase domain
          Length = 1262

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/50 (24%), Positives = 21/50 (42%)
 Frame = +1

Query: 73  HNDHTIFMXXXXXXXXXXXTDIYDIVLCINKSVCANEIIRKSWKMSEFRD 222
           H+DHT F+             + DI++C N     +E+  +     + RD
Sbjct: 263 HSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRD 312


>At5g25100.1 68418.m02974 endomembrane protein 70, putative TM4
           family;
          Length = 644

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +1

Query: 298 GLVSPYYFILDFYYFFNQFQIWRPLTALFYY 390
           G  + Y F+   +YFF + QI + ++A+ Y+
Sbjct: 578 GSSAVYLFLYAAFYFFTKLQITKLVSAMLYF 608


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,981,196
Number of Sequences: 28952
Number of extensions: 270479
Number of successful extensions: 683
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)