Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0912
         (400 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     21   3.4  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        20   7.8  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    20   7.8  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    20   7.8  
AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory recept...    20   7.8  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    20   7.8  

>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 121 SYDFQKKKNPSYYR 80
           SYDF K  +P Y++
Sbjct: 431 SYDFYKMNHPVYHK 444


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 369 TNWLVEYYPSPLSG 328
           T+ + E YPSP+ G
Sbjct: 316 TSVMTELYPSPVPG 329


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -2

Query: 291 RLRTAYPNT 265
           RLRTAY NT
Sbjct: 6   RLRTAYTNT 14


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 352 VLSQPTLREQTAFLQYKRFVQASYRLP 272
           +L   T+ E T  L+YKR  +  YR+P
Sbjct: 293 ILITVTVCELT-ILEYKRTKKLLYRIP 318


>AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory receptor
           candidate 25 protein.
          Length = 314

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 352 VLSQPTLREQTAFLQYKRFVQASYRLP 272
           +L   T+ E T  L+YKR  +  YR+P
Sbjct: 118 ILITVTVCELT-ILEYKRTKKLLYRIP 143


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -2

Query: 291 RLRTAYPNT 265
           RLRTAY NT
Sbjct: 137 RLRTAYTNT 145


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.311    0.131    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,629
Number of Sequences: 336
Number of extensions: 1589
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8541369
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.5 bits)