Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0912
         (400 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13D6.05 |alp11|SPAC4G9.01|tubulin specific chaperone cofacto...    40   2e-04
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po...    38   6e-04
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc...    29   0.20 
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb...    28   0.46 
SPBC12C2.05c |||diacylglycerol binding protein Bzz1 |Schizosacch...    26   2.5  
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   4.3  
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    24   7.6  
SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase |Schizo...    24   7.6  
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa...    24   10.0 
SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+] |Schizosacc...    24   10.0 
SPBC3H7.01 |spo14|stl1, SPBP16F5.01c|WD repeat protein Spo14|Sch...    24   10.0 
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    24   10.0 

>SPAC13D6.05 |alp11|SPAC4G9.01|tubulin specific chaperone cofactor
           B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 234

 Score = 39.5 bits (88), Expect = 2e-04
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = +1

Query: 256 IGERVWVGGTKPGQIAYIGETQFAPGE--WAGIVLDEPIGKNDGSXXGVR 399
           +  R    G + G I YIG       +  W G+  DEP+GKNDG+  G R
Sbjct: 154 LNSRCCAAGERYGTIRYIGLVPEINNDNLWVGVEFDEPVGKNDGTVSGKR 203


>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 670

 Score = 37.9 bits (84), Expect = 6e-04
 Identities = 19/48 (39%), Positives = 26/48 (54%)
 Frame = +1

Query: 256 IGERVWVGGTKPGQIAYIGETQFAPGEWAGIVLDEPIGKNDGSXXGVR 399
           +G+ V + G + G + + G T F  G W G+ L    GKNDGS  G R
Sbjct: 6   VGDEVLIRG-ELGIVRFAGSTDFESGIWLGVELLNGKGKNDGSVKGKR 52


>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
           Thi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 29.5 bits (63), Expect = 0.20
 Identities = 19/52 (36%), Positives = 31/52 (59%)
 Frame = +1

Query: 109 ENHKMPVETKISFSDGSSTDTLRKLSDDLSRKHLSDHSVILTEDTDSFIIGE 264
           EN  +PV +KI+    +  DTL +++D LSR H+S  +  + + + S I GE
Sbjct: 118 ENENLPV-SKIA-EVTNELDTLVRINDQLSRNHISGTTEEM-QSSSSLIAGE 166


>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1379

 Score = 28.3 bits (60), Expect = 0.46
 Identities = 14/40 (35%), Positives = 25/40 (62%)
 Frame = +1

Query: 121 MPVETKISFSDGSSTDTLRKLSDDLSRKHLSDHSVILTED 240
           +P++ K+S S  SST +++ L  + ++KH+  HS I   D
Sbjct: 855 LPMKKKLSHSSASSTRSIKSLLTNANQKHI--HSSINETD 892


>SPBC12C2.05c |||diacylglycerol binding protein Bzz1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 16/64 (25%), Positives = 31/64 (48%)
 Frame = +1

Query: 40  SQTTFSELQIEXXXXXXXXXXXXENHKMPVETKISFSDGSSTDTLRKLSDDLSRKHLSDH 219
           S TT+S++  E            +++ + +  K+   + S  + LRK+ DDL +K  S+ 
Sbjct: 86  SLTTWSKILDELTRSSKTHQKLSDDYSLDIAEKLKKLE-SHIEALRKVYDDLYKKFSSEK 144

Query: 220 SVIL 231
             +L
Sbjct: 145 ETLL 148


>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 682

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -2

Query: 312 SNISDLSRLRTAYPNTFTN 256
           S++SD   ++ +YPNTF N
Sbjct: 600 SHLSDDQHIQYSYPNTFVN 618


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 279 RYEAWTNRLYWRNAV 323
           RYE W N  YW+  V
Sbjct: 703 RYEPWCNYTYWQTFV 717


>SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 11/37 (29%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +1

Query: 154 GSSTDTLR-KLSDDLSRKHLSDHSVILTEDTDSFIIG 261
           G  TD+L   L + +S  ++++HS ++   TD+  +G
Sbjct: 235 GIPTDSLPDSLKERISHDYITEHSSLVVYPTDTDFVG 271


>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
 Frame = +1

Query: 160 STDTLRKLSDDLSRKHLSDHSVILTEDTDSFIIGERVW---VGGTKPGQIAYIG 312
           STD L+K  D   + HL + +VI   D    +    V+   +G    G I Y G
Sbjct: 619 STDPLQKSLDSSLKSHLPEATVIQNTDGSVTVNSLTVYPEVIGYGSHGTIVYRG 672


>SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+]
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 431

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 270 LGRRYEAWTNRLYWRNAVCSRRVGWDS 350
           +GR Y  + ++  WR  VC R   ++S
Sbjct: 15  MGRLYAEYISKAGWRVNVCDRPENYES 41


>SPBC3H7.01 |spo14|stl1, SPBP16F5.01c|WD repeat protein
           Spo14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 397 ERLPLIHRFYQLARRVLSQPTLR 329
           E+L  IHRF+     + S+ T+R
Sbjct: 369 EKLDAIHRFFSFILHIFSKYTIR 391


>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 293 PGFVPPTQTRSPIMKLSVSSVNITLWSDRCF 201
           P F+PPT +R+ +   ++   N TL  D  F
Sbjct: 706 PQFLPPTDSRTLVEFQTIVYTNSTLLFDGSF 736


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.311    0.131    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,528,749
Number of Sequences: 5004
Number of extensions: 27586
Number of successful extensions: 73
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)