Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0912
(400 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1698 - 35458500-35458547,35458919-35458988,35459626-354597... 42 1e-04
05_01_0038 + 260080-260380,260852-261022,261764-261810,262266-26... 37 0.007
09_06_0176 + 21351884-21352693,21352821-21352976,21353425-213536... 29 1.4
06_03_1142 + 27961999-27962263,27963735-27965080,27965158-279654... 29 1.8
10_02_0079 + 5016115-5016936 28 3.1
08_02_0644 - 19658270-19658626,19659142-19659218,19659256-196594... 27 4.1
03_05_0954 - 29113938-29114024,29114277-29114444,29115156-291152... 27 4.1
01_01_1220 + 9862195-9862281,9862427-9862646,9862764-9862916,986... 27 7.2
03_06_0572 + 34812203-34812278,34812485-34813768,34813973-348140... 26 9.5
>04_04_1698 -
35458500-35458547,35458919-35458988,35459626-35459759,
35460671-35460712,35460786-35460824
Length = 110
Score = 42.3 bits (95), Expect = 1e-04
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Frame = +1
Query: 256 IGERVWVG-GTKPGQIAYIGETQ-FAPGEWAGIVLDEPIGKNDGSXXGVR 399
+G+R V G K G + ++G + G W G+ DEP+GK+DG G+R
Sbjct: 28 VGDRCEVEPGAKRGTVKFVGRAEALGRGFWVGVQYDEPLGKHDGMVKGIR 77
>05_01_0038 +
260080-260380,260852-261022,261764-261810,262266-262412,
262495-262569,262826-262935,263032-263159,263368-263429,
263599-263748,263827-263861,264083-264151,264538-264629,
264718-264794,265434-265532
Length = 520
Score = 36.7 bits (81), Expect = 0.007
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Frame = +1
Query: 247 SFIIGERVWVGG--TKPGQIAYIGETQFAPGEWAGIVLDEPI-GKNDGSXXGVR 399
+F +G+RV G + G + Y+G PG+W G+ D G++DGS G R
Sbjct: 5 AFRLGQRVHAAGDPARVGTVRYLGPVDGHPGDWLGVDWDAGAGGRHDGSLAGRR 58
>09_06_0176 + 21351884-21352693,21352821-21352976,21353425-21353613,
21354741-21356354,21356446-21356553,21356649-21357509,
21357586-21357632,21358591-21358697,21359512-21359630,
21359706-21359915,21360412-21360693,21360820-21360952,
21361256-21361413,21362564-21362647,21362949-21363035
Length = 1654
Score = 29.1 bits (62), Expect = 1.4
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +1
Query: 109 ENHKMPVETKISFSDGSSTDTLRKLSD 189
E ++ P T +S SDG+STD + K SD
Sbjct: 1237 EANQKPENTTLSCSDGTSTDVIDKQSD 1263
>06_03_1142 +
27961999-27962263,27963735-27965080,27965158-27965435,
27965706-27965737,27965830-27966236,27966373-27966858
Length = 937
Score = 28.7 bits (61), Expect = 1.8
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -2
Query: 375 VFTNWLVEYYPSPLSGSKLRFSNISDLSRLRTAYPNTFTNNEAIS 241
+ T+WL S +SG S + L LR +P++ T E IS
Sbjct: 254 IVTDWLAAVMDSSMSGDLKTMSYMQGLIVLRQHFPDSETKREFIS 298
>10_02_0079 + 5016115-5016936
Length = 273
Score = 27.9 bits (59), Expect = 3.1
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = -3
Query: 368 PIGSSSTIPAHSPGANCVSPI*AICPGFVPPTQTRSPI 255
P + IPA +P AN +S P PP T P+
Sbjct: 22 PTNPRNAIPAANPAANPISGAAHSAPANAPPPATECPV 59
>08_02_0644 -
19658270-19658626,19659142-19659218,19659256-19659430,
19659543-19659596,19659691-19659858,19660756-19660953,
19661546-19661632,19661739-19661827,19662499-19662955
Length = 553
Score = 27.5 bits (58), Expect = 4.1
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -3
Query: 299 ICPGFVPPTQTRSPIMKLSVSSVNITL 219
+CPGFV ++T SP M L+ S+ + +
Sbjct: 364 LCPGFVLLSRTTSPGMVLTTGSIPLNM 390
>03_05_0954 -
29113938-29114024,29114277-29114444,29115156-29115212,
29115314-29115369,29115463-29115572,29116142-29116310,
29116418-29116742,29117378-29117442,29117541-29117712,
29118191-29118484
Length = 500
Score = 27.5 bits (58), Expect = 4.1
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +1
Query: 148 SDGSSTDT-LRKLSDDLSRKHLSDHSVILTEDT 243
S G + T LRK++DD+ K+ SD S +++ T
Sbjct: 278 SSGKAVTTGLRKVTDDMKTKNRSDRSGVVSSST 310
>01_01_1220 +
9862195-9862281,9862427-9862646,9862764-9862916,
9863016-9863674,9863749-9863852,9863950-9864192,
9864262-9864376,9864696-9864909,9864995-9865511,
9866439-9866448,9867363-9867551,9867755-9868084,
9868639-9868872,9869303-9869743
Length = 1171
Score = 26.6 bits (56), Expect = 7.2
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -3
Query: 362 GSSSTIPAHSPGANCVSPI*AICPGFVPPTQTR 264
G+++T H GA +SP+ A+ PG V T TR
Sbjct: 614 GAAAT--GHDMGAGEISPLRALSPGLVFDTTTR 644
>03_06_0572 +
34812203-34812278,34812485-34813768,34813973-34814049,
34814299-34814646
Length = 594
Score = 26.2 bits (55), Expect = 9.5
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = -3
Query: 392 PXXDPSFLPIGSSSTIPAHSPGANCVSPI*AICPGFVPPT 273
P +P+ P + T+PA +P N V+P P P T
Sbjct: 246 PVTNPTTTPATNPVTVPATNPAMNPVTPGIVTVPSTNPAT 285
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.311 0.131 0.379
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,935,852
Number of Sequences: 37544
Number of extensions: 177254
Number of successful extensions: 351
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 351
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
- SilkBase 1999-2023 -