Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0912
(400 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15709| Best HMM Match : CAP_GLY (HMM E-Value=0) 78 3e-15
SB_40639| Best HMM Match : CAP_GLY (HMM E-Value=0) 77 7e-15
SB_27800| Best HMM Match : CAP_GLY (HMM E-Value=2.5e-39) 57 5e-09
SB_25835| Best HMM Match : CAP_GLY (HMM E-Value=2.9e-32) 57 6e-09
SB_41580| Best HMM Match : CAP_GLY (HMM E-Value=4.1e-28) 54 4e-08
SB_26444| Best HMM Match : CAP_GLY (HMM E-Value=1.2e-23) 53 1e-07
SB_4343| Best HMM Match : CAP_GLY (HMM E-Value=1.2e-19) 38 0.003
SB_47332| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.15
SB_4005| Best HMM Match : CAP_GLY (HMM E-Value=5.8e-17) 31 0.46
SB_38048| Best HMM Match : CUB (HMM E-Value=1.4e-31) 27 4.3
SB_47405| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.4
SB_59549| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.8
SB_44854| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.8
>SB_15709| Best HMM Match : CAP_GLY (HMM E-Value=0)
Length = 729
Score = 77.8 bits (183), Expect = 3e-15
Identities = 41/99 (41%), Positives = 58/99 (58%), Gaps = 12/99 (12%)
Frame = +1
Query: 133 TKISFSDGSSTDTLRKLSDDLSRKHLSDHSVILTEDTDS------------FIIGERVWV 276
TK+S+ +S+ +LR + + S S I+ + S F +G+RV V
Sbjct: 105 TKLSYRRETSSSSLRSSGSETQLRRESSQSSIVRRGSSSSQPTPSDELLKLFQVGDRVLV 164
Query: 277 GGTKPGQIAYIGETQFAPGEWAGIVLDEPIGKNDGSXXG 393
TKPG IA++GET+FA G+WAGI+LD+P GKNDGS G
Sbjct: 165 NNTKPGVIAFLGETKFAKGDWAGIILDDPTGKNDGSVAG 203
Score = 72.9 bits (171), Expect = 9e-14
Identities = 31/55 (56%), Positives = 40/55 (72%)
Frame = +1
Query: 235 EDTDSFIIGERVWVGGTKPGQIAYIGETQFAPGEWAGIVLDEPIGKNDGSXXGVR 399
E++ S IG+RV V G K G + Y+G T+FA GEWAG+ LDEP+GKNDG+ G R
Sbjct: 237 ENSSSLEIGDRVVVSGNKIGTLRYVGTTEFAKGEWAGVELDEPLGKNDGAVAGTR 291
>SB_40639| Best HMM Match : CAP_GLY (HMM E-Value=0)
Length = 709
Score = 76.6 bits (180), Expect = 7e-15
Identities = 30/55 (54%), Positives = 41/55 (74%)
Frame = +1
Query: 235 EDTDSFIIGERVWVGGTKPGQIAYIGETQFAPGEWAGIVLDEPIGKNDGSXXGVR 399
+D + IGERV++GGTK G + + G T+FA GEW G+ LD+P+GKNDGS GV+
Sbjct: 385 QDANELTIGERVYIGGTKSGVLRFCGRTEFASGEWVGVELDQPVGKNDGSVDGVQ 439
Score = 70.5 bits (165), Expect = 5e-13
Identities = 42/98 (42%), Positives = 53/98 (54%), Gaps = 2/98 (2%)
Frame = +1
Query: 112 NHKMPVETKISFSDGSSTDTLRKLSDDLSRKHLSDHSVIL--TEDTDSFIIGERVWVGGT 285
+ + P E+ + S +S + R S SR S L +E F IGE V V G
Sbjct: 473 SRRPPGESTLVTSQPNSRPSSRPSSRPNSRSPSPTPSPRLDDSEIARDFQIGEHVLVAGQ 532
Query: 286 KPGQIAYIGETQFAPGEWAGIVLDEPIGKNDGSXXGVR 399
KPG + +IG+TQFA G W GI L P+GKNDGS GVR
Sbjct: 533 KPGIVQFIGQTQFASGWWLGIELSNPVGKNDGSVGGVR 570
>SB_27800| Best HMM Match : CAP_GLY (HMM E-Value=2.5e-39)
Length = 246
Score = 57.2 bits (132), Expect = 5e-09
Identities = 27/59 (45%), Positives = 36/59 (61%), Gaps = 4/59 (6%)
Frame = +1
Query: 235 EDTDSFIIGER--VWVGGTKP--GQIAYIGETQFAPGEWAGIVLDEPIGKNDGSXXGVR 399
+D ++ +G R V V G P G++ ++G T F PG W GI DEP+GKNDGS G R
Sbjct: 153 KDAEAIPVGSRCEVKVAGAPPKRGEVMFVGTTDFKPGYWVGIKYDEPLGKNDGSVAGKR 211
>SB_25835| Best HMM Match : CAP_GLY (HMM E-Value=2.9e-32)
Length = 640
Score = 56.8 bits (131), Expect = 6e-09
Identities = 25/48 (52%), Positives = 32/48 (66%)
Frame = +1
Query: 256 IGERVWVGGTKPGQIAYIGETQFAPGEWAGIVLDEPIGKNDGSXXGVR 399
+G + VG K G I +IG T+F+PG W G+ LD+ GKNDGS GVR
Sbjct: 472 VGMAIEVGKGKTGVIRFIGATEFSPGPWVGVELDKAGGKNDGSVSGVR 519
>SB_41580| Best HMM Match : CAP_GLY (HMM E-Value=4.1e-28)
Length = 834
Score = 54.0 bits (124), Expect = 4e-08
Identities = 22/38 (57%), Positives = 27/38 (71%)
Frame = +1
Query: 286 KPGQIAYIGETQFAPGEWAGIVLDEPIGKNDGSXXGVR 399
+ G + + G T F+PGEW GIVLD+ GKNDGS GVR
Sbjct: 250 RTGLLQFTGTTHFSPGEWCGIVLDDACGKNDGSVKGVR 287
>SB_26444| Best HMM Match : CAP_GLY (HMM E-Value=1.2e-23)
Length = 1024
Score = 52.8 bits (121), Expect = 1e-07
Identities = 21/34 (61%), Positives = 26/34 (76%)
Frame = +1
Query: 292 GQIAYIGETQFAPGEWAGIVLDEPIGKNDGSXXG 393
G +AY+G TQFA G+W G+VLDE GKNDG+ G
Sbjct: 4 GTVAYVGATQFATGKWIGVVLDEKKGKNDGTVQG 37
>SB_4343| Best HMM Match : CAP_GLY (HMM E-Value=1.2e-19)
Length = 898
Score = 37.9 bits (84), Expect = 0.003
Identities = 20/73 (27%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Frame = +1
Query: 190 DLSRKHLSDHSVILTEDTD--SFIIGERVWVGGTKPGQIAYIGETQFAPGEWAGIVLDEP 363
DL ++ D + T+ ++ F G+RV + G G + ++G T+ G+W GI +D+
Sbjct: 42 DLLQQSTQDRNTSATKKSEVQKFNTGDRVHLRGYI-GTVKFVGATELGQGDWVGIEMDKE 100
Query: 364 IGK-NDGSXXGVR 399
+ + ++GS G++
Sbjct: 101 LNQGHNGSYEGIQ 113
>SB_47332| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 217
Score = 32.3 bits (70), Expect = 0.15
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +1
Query: 262 ERVWVGGTKPGQIAYIGETQFAPGEWAGIVLDE 360
E +W G G + Y G PGEW GI LD+
Sbjct: 14 EVLWRGEVCKGAVRYTGMLVAKPGEWIGIELDD 46
>SB_4005| Best HMM Match : CAP_GLY (HMM E-Value=5.8e-17)
Length = 560
Score = 30.7 bits (66), Expect = 0.46
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +1
Query: 259 GERVWVGGTKPGQIAYIGETQFAPGEWAGIVLD--EPIGKNDGS 384
G+RV V G G + ++G T G W GI LD +P G N GS
Sbjct: 86 GDRVHVRGYV-GTVKFVGCTSLGEGVWVGIALDKQQPQG-NSGS 127
>SB_38048| Best HMM Match : CUB (HMM E-Value=1.4e-31)
Length = 551
Score = 27.5 bits (58), Expect = 4.3
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = -3
Query: 392 PXXDPSFLPIGSSSTIPAHSPGANCV--SPI*AICPGFVPPTQTRSPIMKLSVSSVNITL 219
P + + +PIG +T P++SP C+ P+ + F+ +R+ + ++V ITL
Sbjct: 314 PSFNGTAVPIGRGTTCPSYSPEIGCIFDKPV-FLISCFIGVHMSRNDLPLTGDNTVKITL 372
>SB_47405| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 182
Score = 26.6 bits (56), Expect = 7.4
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 259 GERVWVGGTKPGQIAYIGETQFAPGEWAGIVL 354
G R++ GGT PG+ G F G ++G L
Sbjct: 150 GRRLFGGGTYPGKTLIWGRRLFGEGAYSGEAL 181
>SB_59549| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2631
Score = 26.2 bits (55), Expect = 9.8
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +1
Query: 127 VETKISFSDGSSTDTLRKLSDDLSRKHLSDHS 222
+ETKI DG D RK DD + HS
Sbjct: 2401 IETKIGAKDGDVLDIFRKGPDDFECRVSPKHS 2432
>SB_44854| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 890
Score = 26.2 bits (55), Expect = 9.8
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +1
Query: 178 KLSDDLSRKHLSDHSVILTEDTDSFI 255
K+SDDL+ +HLSD S+ +++ ++
Sbjct: 134 KMSDDLTVQHLSDDSLGYARNSNKYL 159
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.311 0.131 0.379
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,371,163
Number of Sequences: 59808
Number of extensions: 200952
Number of successful extensions: 392
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 392
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
- SilkBase 1999-2023 -