Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0912
         (400 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77663-3|CAB01212.1|  229|Caenorhabditis elegans Hypothetical pr...    58   2e-09
Z69385-4|CAA93427.2| 1326|Caenorhabditis elegans Hypothetical pr...    50   6e-07
Z27081-3|CAH19085.1|  869|Caenorhabditis elegans Hypothetical pr...    34   0.043
Z27081-2|CAA81607.2|  937|Caenorhabditis elegans Hypothetical pr...    34   0.043
U40952-2|AAA81737.1|  818|Caenorhabditis elegans Hypothetical pr...    27   3.7  
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote...    26   8.7  
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote...    26   8.7  
AF067220-1|AAK84500.1| 1014|Caenorhabditis elegans Hypothetical ...    26   8.7  

>Z77663-3|CAB01212.1|  229|Caenorhabditis elegans Hypothetical
           protein F53F4.3 protein.
          Length = 229

 Score = 58.0 bits (134), Expect = 2e-09
 Identities = 35/92 (38%), Positives = 53/92 (57%), Gaps = 10/92 (10%)
 Frame = +1

Query: 154 GSSTDTLR----KLSDDL-SRKHLSDHSVILTEDT-DSFIIGER--VWVGG--TKPGQIA 303
           G  TD++R    K+ ++  S   + + S  L E+   + ++G R  V VG    + G++A
Sbjct: 108 GKRTDSVRAWKKKMQEEQGSAAPMENESDKLNEEAAKNIMVGNRCEVTVGAQMARRGEVA 167

Query: 304 YIGETQFAPGEWAGIVLDEPIGKNDGSXXGVR 399
           Y+G T+F  G W G+  DEP+GKNDGS  GVR
Sbjct: 168 YVGATKFKEGVWVGVKYDEPVGKNDGSVAGVR 199


>Z69385-4|CAA93427.2| 1326|Caenorhabditis elegans Hypothetical
           protein ZK593.5 protein.
          Length = 1326

 Score = 50.0 bits (114), Expect = 6e-07
 Identities = 22/51 (43%), Positives = 32/51 (62%)
 Frame = +1

Query: 247 SFIIGERVWVGGTKPGQIAYIGETQFAPGEWAGIVLDEPIGKNDGSXXGVR 399
           SF IG RV       G++ + G+TQFA G+W G++LD   GKN+G+   V+
Sbjct: 2   SFEIGTRVKTSSGN-GRVVFCGQTQFAEGDWVGVILDTATGKNNGTVQNVQ 51


>Z27081-3|CAH19085.1|  869|Caenorhabditis elegans Hypothetical
           protein M01A8.2b protein.
          Length = 869

 Score = 33.9 bits (74), Expect = 0.043
 Identities = 19/47 (40%), Positives = 24/47 (51%)
 Frame = +1

Query: 256 IGERVWVGGTKPGQIAYIGETQFAPGEWAGIVLDEPIGKNDGSXXGV 396
           IG  V V     G + Y+G      G + GI L EP GK+DG+  GV
Sbjct: 21  IGRLVDVVNVGKGFLRYVGPIHGKDGMFCGIELLEPNGKHDGTFQGV 67


>Z27081-2|CAA81607.2|  937|Caenorhabditis elegans Hypothetical
           protein M01A8.2a protein.
          Length = 937

 Score = 33.9 bits (74), Expect = 0.043
 Identities = 19/47 (40%), Positives = 24/47 (51%)
 Frame = +1

Query: 256 IGERVWVGGTKPGQIAYIGETQFAPGEWAGIVLDEPIGKNDGSXXGV 396
           IG  V V     G + Y+G      G + GI L EP GK+DG+  GV
Sbjct: 21  IGRLVDVVNVGKGFLRYVGPIHGKDGMFCGIELLEPNGKHDGTFQGV 67


>U40952-2|AAA81737.1|  818|Caenorhabditis elegans Hypothetical
           protein C03B1.7 protein.
          Length = 818

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +1

Query: 109 ENHKMPVETKISFSDGSSTDTLRKLSDDLSRKHLSDHSVILTED 240
           E+ +    +  +F  GSS   L +L  D  RK L+D+    TED
Sbjct: 640 EDFEFGSSSSTNFVTGSSRSLLPELDADFVRKTLADYEENATED 683


>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
             protein.
          Length = 18519

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
 Frame = +1

Query: 142   SFSDGSSTDTLRKLSDDLSR-----KHLSDHSVILTEDTDSFIIGE 264
             S S   S   L+K  D+LS      KH    ++ LTE  DS + G+
Sbjct: 11855 SLSQLDSEHRLKKRDDELSAHTKLGKHTQSENIALTETDDSLVKGD 11900


>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
             protein.
          Length = 18534

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
 Frame = +1

Query: 142   SFSDGSSTDTLRKLSDDLSR-----KHLSDHSVILTEDTDSFIIGE 264
             S S   S   L+K  D+LS      KH    ++ LTE  DS + G+
Sbjct: 11855 SLSQLDSEHRLKKRDDELSAHTKLGKHTQSENIALTETDDSLVKGD 11900


>AF067220-1|AAK84500.1| 1014|Caenorhabditis elegans Hypothetical
           protein C33E10.6 protein.
          Length = 1014

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +1

Query: 124 PVETKISFSDGSSTDTLRKLSDDLSRKHLSDHSVILTEDTDSFI 255
           P+   +S  D S T  + +   D+ +KH  +   +  +DTDSFI
Sbjct: 835 PIYVALSILDLSKT-IMYEFHYDVMKKHFGNKIDLCYQDTDSFI 877


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.311    0.131    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,396,480
Number of Sequences: 27780
Number of extensions: 150433
Number of successful extensions: 344
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 344
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)