Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0912
(400 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g10220.1 68416.m01223 tubulin folding cofactor B identical to... 48 3e-06
At1g71440.1 68414.m08253 tubulin folding cofactor E / Pfifferlin... 37 0.004
At5g37630.1 68418.m04532 chromosome condensation family protein ... 31 0.28
At3g52640.2 68416.m05800 nicastrin-related contains weak similar... 29 1.1
At3g52640.1 68416.m05799 nicastrin-related contains weak similar... 29 1.1
At1g57600.1 68414.m06536 membrane bound O-acyl transferase (MBOA... 29 1.5
At5g66710.1 68418.m08409 protein kinase, putative similar to pro... 28 2.0
At1g60790.1 68414.m06843 expressed protein 28 2.0
At4g37890.2 68417.m05359 zinc finger (C3HC4-type RING finger) fa... 28 2.6
At4g37890.1 68417.m05358 zinc finger (C3HC4-type RING finger) fa... 28 2.6
At5g23350.1 68418.m02731 GRAM domain-containing protein / ABA-re... 27 4.6
At4g34490.1 68417.m04903 cyclase-associated protein (cap1) ident... 27 6.1
At4g15180.1 68417.m02328 SET domain-containing protein contains ... 27 6.1
At5g23360.1 68418.m02732 GRAM domain-containing protein / ABA-re... 26 8.0
At4g16940.1 68417.m02555 disease resistance protein (TIR-NBS-LRR... 26 8.0
At1g22950.1 68414.m02868 oxidoreductase, 2OG-Fe(II) oxygenase fa... 26 8.0
>At3g10220.1 68416.m01223 tubulin folding cofactor B identical to
tubulin folding cofactor B GI:20514259 from [Arabidopsis
thaliana]; identical to cDNA tubulin folding cofactor B
GI:20514258
Length = 243
Score = 47.6 bits (108), Expect = 3e-06
Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Frame = +1
Query: 256 IGERVWVG-GTKPGQIAYIGETQ-FAPGEWAGIVLDEPIGKNDGSXXGVR 399
+G+R V G K G + Y+G + PG W GI DEP+GK+DG G R
Sbjct: 161 VGDRCQVEPGEKRGMVKYVGRAESLGPGYWVGIQYDEPLGKHDGMVKGTR 210
>At1g71440.1 68414.m08253 tubulin folding cofactor E / Pfifferling
(PFI) almost identical to tubulin folding cofactor E
(Pfifferling; PFI) GI:20514267 from [Arabidopsis
thaliana]; identical to cDNA tubulin folding cofactor E,
GI:20514266
Length = 531
Score = 37.1 bits (82), Expect = 0.004
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Frame = +1
Query: 244 DSFIIGERVWV--GGTKPGQIAYIGETQFAPGEWAGIVLDEP-IGKNDGSXXGV 396
+SFIIG+RV + G + Y+G+ + G W G+ D+ GK++GS GV
Sbjct: 8 ESFIIGQRVHSLNDSRRVGTVKYVGDVEGYSGTWIGVDWDQDGDGKHNGSVNGV 61
>At5g37630.1 68418.m04532 chromosome condensation family protein
contains pfam profile: PF04154 chromosome condensation
protein 3, C-terminal region
Length = 1051
Score = 31.1 bits (67), Expect = 0.28
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Frame = +1
Query: 133 TKISFSDGSSTDTLRKLSDDLSRKHLSDHSVILTEDTDSFIIGERVWVGGTKPGQIA--- 303
T + FSD T+ +L R+ L ED +S +IG+ + +GG K A
Sbjct: 447 TMLDFSDAMLHKTVSSFVQELLRRPFEQE---LDEDGNSIVIGDGINLGGDKDWAEAVSK 503
Query: 304 YIGETQFAPGEWAGIVL 354
+ APGE+ ++L
Sbjct: 504 LAKKVHAAPGEYEEVIL 520
>At3g52640.2 68416.m05800 nicastrin-related contains weak similarity
to Nicastrin precursor (Swiss-Prot:Q92542) [Homo
sapiens]
Length = 705
Score = 29.1 bits (62), Expect = 1.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 304 YIGETQFAPGEWAGIVLDEPIGK 372
YI T PG +AG++L EP K
Sbjct: 535 YISPTNTCPGNYAGVILGEPSSK 557
>At3g52640.1 68416.m05799 nicastrin-related contains weak similarity
to Nicastrin precursor (Swiss-Prot:Q92542) [Homo
sapiens]
Length = 676
Score = 29.1 bits (62), Expect = 1.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 304 YIGETQFAPGEWAGIVLDEPIGK 372
YI T PG +AG++L EP K
Sbjct: 506 YISPTNTCPGNYAGVILGEPSSK 528
>At1g57600.1 68414.m06536 membrane bound O-acyl transferase (MBOAT)
family protein low similarity to skinny hedgehog
[Drosophila melanogaster] GI:15420842; contains Pfam
profile PF03062: MBOAT family
Length = 533
Score = 28.7 bits (61), Expect = 1.5
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -2
Query: 372 FTNWLVEYYPSPLSGSKLRFSNI 304
F WL+ Y PL GS+ +F N+
Sbjct: 385 FNRWLIRYMYIPLGGSRRKFLNV 407
>At5g66710.1 68418.m08409 protein kinase, putative similar to
protein kinase ATN1 GP|1054633 [Arabidopsis thaliana]
Length = 405
Score = 28.3 bits (60), Expect = 2.0
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +1
Query: 157 SSTDTLRKLSDDLSRKHLSDHSVILTEDTDSFIIGERV 270
S T+ LR LS D + + I TED+ S ++ ERV
Sbjct: 329 SLTNLLRSLSSDTDATSSNSKANIATEDSTSSLVQERV 366
>At1g60790.1 68414.m06843 expressed protein
Length = 541
Score = 28.3 bits (60), Expect = 2.0
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = -1
Query: 115 DFQKKKNPSYYRISPRFEVRKT*FVSVXSECSLWWRP 5
DF+K +PS YR+ R E K VS +CS W P
Sbjct: 483 DFRKDGHPSIYRMVYRTEKEKREAVS-HQDCSHWCLP 518
>At4g37890.2 68417.m05359 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profiles PF00097: Zinc
finger, C3HC4 type (RING finger), PF00092: von
Willebrand factor type A domain
Length = 711
Score = 27.9 bits (59), Expect = 2.6
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = -3
Query: 359 SSSTIPAHSPGANCVSPI*AICPGFVPPTQTRSPIMKLSVSSVNIT 222
S++ I SP + G V PT+ RSP+ LSVSS + T
Sbjct: 67 SATAISTPSPSLPASPKLQCDTSGDVTPTRNRSPLSFLSVSSSSST 112
>At4g37890.1 68417.m05358 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profiles PF00097: Zinc
finger, C3HC4 type (RING finger), PF00092: von
Willebrand factor type A domain
Length = 739
Score = 27.9 bits (59), Expect = 2.6
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = -3
Query: 359 SSSTIPAHSPGANCVSPI*AICPGFVPPTQTRSPIMKLSVSSVNIT 222
S++ I SP + G V PT+ RSP+ LSVSS + T
Sbjct: 67 SATAISTPSPSLPASPKLQCDTSGDVTPTRNRSPLSFLSVSSSSST 112
>At5g23350.1 68418.m02731 GRAM domain-containing protein /
ABA-responsive protein-related contains similarity to
ABA-responsive protein in barley (GI:4103635) [Hordeum
vulgare] [J. Exp. Bot. 50, 727-728 (1999); contains Pfam
PF02893: GRAM domain
Length = 280
Score = 27.1 bits (57), Expect = 4.6
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +1
Query: 112 NHKMPVETKISFSDGSSTDTLRKLSDD 192
NH++P +K+S+ G LRK D
Sbjct: 94 NHQIPTSSKVSYLTGKGKSMLRKKKTD 120
>At4g34490.1 68417.m04903 cyclase-associated protein (cap1)
identical to cyclase-associated protein (cap1)
GI:3169136 from [Arabidopsis thaliana]
Length = 476
Score = 26.6 bits (56), Expect = 6.1
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 148 SDGSSTDTLRKLSDDLSRKHLSDHS 222
S G+ T LRK++DD+ K+ +D S
Sbjct: 270 SSGAVTSGLRKVTDDMKTKNRADRS 294
>At4g15180.1 68417.m02328 SET domain-containing protein contains
Pfam profile PF00856: SET domain
Length = 2326
Score = 26.6 bits (56), Expect = 6.1
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +1
Query: 127 VETKISFSDGSS--TDTLRKLSDDLSRKHLSDH 219
+E K S++D + RKLSDD SR SDH
Sbjct: 347 IERKHSYADYGDYGSSKCRKLSDDCSRSLHSDH 379
>At5g23360.1 68418.m02732 GRAM domain-containing protein /
ABA-responsive protein-related contains similarity to
ABA-responsive protein in barley (GI:4103635) [Hordeum
vulgare] [J. Exp. Bot. 50, 727-728 (1999); contains Pfam
PF02893: GRAM domain]
Length = 210
Score = 26.2 bits (55), Expect = 8.0
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -2
Query: 357 VEYYPSPLSGSKLRFSNISDLSRLRTAYPNTFTN 256
V Y P P S +KL+ S +S L+ ++FTN
Sbjct: 21 VGYLPDPASINKLQIPTSSKVSMLQKKKTDSFTN 54
>At4g16940.1 68417.m02555 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1103
Score = 26.2 bits (55), Expect = 8.0
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -2
Query: 360 LVEYYPSPLSGSKLRFSNISDLSRLR 283
++E +PSPL+ L+F N+ RLR
Sbjct: 660 VLESFPSPLNSESLKFLNLLLCPRLR 685
>At1g22950.1 68414.m02868 oxidoreductase, 2OG-Fe(II) oxygenase
family protein contains Pfam domain PF03171 2OG-Fe(II)
oxygenase superfamily
Length = 388
Score = 26.2 bits (55), Expect = 8.0
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 267 CLGRRYEAWTNRLYWRNAVCSRRVGWDSTRR 359
CLG+++ LY+R C + V DST +
Sbjct: 262 CLGKQFSG--GELYFRGVRCDKHVNSDSTEK 290
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.311 0.131 0.379
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,017,830
Number of Sequences: 28952
Number of extensions: 144673
Number of successful extensions: 364
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 363
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 575830496
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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