Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0911
(600 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 140 2e-34
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 77 2e-15
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 69 4e-13
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 67 2e-12
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 59 6e-10
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 54 2e-08
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 53 3e-08
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 53 4e-08
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 49 5e-07
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 49 6e-07
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 48 1e-06
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 48 1e-06
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 46 4e-06
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 44 2e-05
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 41 2e-04
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 40 3e-04
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 39 6e-04
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 38 0.001
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 33 0.032
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 30 0.22
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 30 0.30
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 29 0.52
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 29 0.52
SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 28 1.2
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 28 1.2
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 28 1.2
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo... 27 2.8
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 26 3.7
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 26 3.7
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 25 6.4
SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces pom... 25 6.4
SPCC338.13 |cog4||Golgi transport complex subunit Cog4 |Schizosa... 25 8.5
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 140 bits (338), Expect = 2e-34
Identities = 62/115 (53%), Positives = 80/115 (69%)
Frame = +3
Query: 213 RPDWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEAXFP 392
+ DW + +L PF K+FY H V RS EV EYR + E+ V G+ V P+ FEEA FP
Sbjct: 71 KKDWKNETLIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEAGFP 130
Query: 393 DYVQXGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLDYILPAIVHIN 557
+YV VK +G++ PTPIQ Q WP+AMSG+++ G++ TGSGKTL Y LPAIVHIN
Sbjct: 131 NYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVHIN 185
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 77.0 bits (181), Expect = 2e-15
Identities = 37/113 (32%), Positives = 63/113 (55%), Gaps = 1/113 (0%)
Frame = +3
Query: 219 DWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEAXFPD 395
D ++ + F K+FY + SP EV+E R + + + G++ P+ + +
Sbjct: 368 DHSKINYEDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSA 427
Query: 396 YVQXGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLDYILPAIVHI 554
+ ++GY++PT IQAQ P SG+++ GVA+TGSGKT+ ++LP HI
Sbjct: 428 QTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHI 480
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 69.3 bits (162), Expect = 4e-13
Identities = 29/81 (35%), Positives = 52/81 (64%)
Frame = +3
Query: 315 RNKHEVTVSGVEVHNPIQYFEEAXFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSGKNLXG 494
+ + +++ G ++ NP++ +EEA P + +K + YKEP+ IQ P+ + K+L G
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIG 291
Query: 495 VAQTGSGKTLDYILPAIVHIN 557
+A+TGSGKT +I+P I+ I+
Sbjct: 292 IAETGSGKTAAFIIPLIIAIS 312
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 67.3 bits (157), Expect = 2e-12
Identities = 32/87 (36%), Positives = 54/87 (62%), Gaps = 3/87 (3%)
Frame = +3
Query: 306 EEYRNKHEVTVSGVEVHN---PIQYFEEAXFPDYVQXGVKTMGYKEPTPIQAQGWPIAMS 476
+ Y KH ++ + + PI F+E ++ G+K YKEPTPIQA WP ++
Sbjct: 144 DRYIKKHNISFADPKSSENLLPILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLA 201
Query: 477 GKNLXGVAQTGSGKTLDYILPAIVHIN 557
G+++ G+A+TGSGKT+ + +PA+ ++N
Sbjct: 202 GRDVVGIAETGSGKTVAFGIPALQYLN 228
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 58.8 bits (136), Expect = 6e-10
Identities = 27/72 (37%), Positives = 40/72 (55%)
Frame = +3
Query: 330 VTVSGVEVHNPIQYFEEAXFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTG 509
V VSG ++ P+ F ++ +K GY +PTP+Q PI SG++L AQTG
Sbjct: 158 VEVSGGDIE-PVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTG 216
Query: 510 SGKTLDYILPAI 545
SGKT ++ P +
Sbjct: 217 SGKTAGFLFPIL 228
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 54.0 bits (124), Expect = 2e-08
Identities = 26/82 (31%), Positives = 48/82 (58%)
Frame = +3
Query: 300 EVEEYRNKHEVTVSGVEVHNPIQYFEEAXFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSG 479
E E+ R + V ++ + I+ F + + +Q +K MG++ T IQ + P ++G
Sbjct: 68 ENEDERVQKSVNLNASSTSD-IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAG 126
Query: 480 KNLXGVAQTGSGKTLDYILPAI 545
+++ G A+TGSGKTL +++P I
Sbjct: 127 RDVLGAAKTGSGKTLAFLIPTI 148
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 53.2 bits (122), Expect = 3e-08
Identities = 23/58 (39%), Positives = 37/58 (63%)
Frame = +3
Query: 372 FEEAXFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLDYILPAI 545
F+E D + + +G+K PTPIQ + P+ ++ +++ G+AQTGSGKT + LP I
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVI 105
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 52.8 bits (121), Expect = 4e-08
Identities = 20/44 (45%), Positives = 33/44 (75%)
Frame = +3
Query: 423 GYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLDYILPAIVHI 554
G+K PTPIQ + P+ + G+++ G+A+TGSGKT +++P I H+
Sbjct: 88 GFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEHL 131
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 49.2 bits (112), Expect = 5e-07
Identities = 22/56 (39%), Positives = 33/56 (58%)
Frame = +3
Query: 372 FEEAXFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLDYILP 539
F+ +++ V G+K+ TP+QA P+ + K+L A TGSGKTL Y+LP
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLP 58
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 48.8 bits (111), Expect = 6e-07
Identities = 19/62 (30%), Positives = 39/62 (62%)
Frame = +3
Query: 372 FEEAXFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLDYILPAIVH 551
FE+ + G+ G++ P+PIQ + PIA+SG+++ A+ G+GKT +++P++
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEK 105
Query: 552 IN 557
++
Sbjct: 106 VD 107
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 48.0 bits (109), Expect = 1e-06
Identities = 20/68 (29%), Positives = 39/68 (57%)
Frame = +3
Query: 342 GVEVHNPIQYFEEAXFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKT 521
G+ + + F + +Q + +++PT +Q++ P+A+ GK+L A+TGSGKT
Sbjct: 6 GIREESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKT 65
Query: 522 LDYILPAI 545
Y++P +
Sbjct: 66 AAYLIPIL 73
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 48.0 bits (109), Expect = 1e-06
Identities = 20/46 (43%), Positives = 32/46 (69%)
Frame = +3
Query: 408 GVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLDYILPAI 545
G+ +G++ PT IQ + P+A+ GK++ G A TGSGKT +I+P +
Sbjct: 273 GLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPIL 318
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 46.0 bits (104), Expect = 4e-06
Identities = 25/83 (30%), Positives = 41/83 (49%)
Frame = +3
Query: 306 EEYRNKHEVTVSGVEVHNPIQYFEEAXFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSGKN 485
EE E+ + + +F E + +K + T IQ Q P A+ G++
Sbjct: 19 EEEEEIEELNSQIEALSETVDHFAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRD 78
Query: 486 LXGVAQTGSGKTLDYILPAIVHI 554
+ G A+TGSGKTL +I+P I ++
Sbjct: 79 ILGAAKTGSGKTLAFIVPLIENL 101
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 43.6 bits (98), Expect = 2e-05
Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 5/121 (4%)
Frame = +3
Query: 225 DSVSLQPFNKNFYD--PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEAXFPDY 398
D++ L N F + P P++ ++ +++ K + V+G +NP+ EE FP+
Sbjct: 2 DALKLLTTNVKFKNKVPQPSIKEKEAKKLQGI-TKGKAKVTG---NNPVDPIEE--FPEG 55
Query: 399 VQX-GVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLDYILPAI--VHIN*PTG 569
+ +K E T IQ P S ++L A TGSGKT+ Y+ P + + ++ P G
Sbjct: 56 ILCENLKKQNITECTTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHVPGG 115
Query: 570 Y 572
Y
Sbjct: 116 Y 116
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 40.7 bits (91), Expect = 2e-04
Identities = 19/43 (44%), Positives = 27/43 (62%)
Frame = +3
Query: 423 GYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLDYILPAIVH 551
G+ +P PIQ+ P A G ++ G A TGSGKTL + +P + H
Sbjct: 141 GFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEH 183
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 39.9 bits (89), Expect = 3e-04
Identities = 18/67 (26%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Frame = +3
Query: 363 IQYFEEAXFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSG--KNLXGVAQTGSGKTLDYIL 536
++ FEE + G+ +M +++P+ IQ + P+ +S +N+ G +Q+G+GKT + L
Sbjct: 113 VKSFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFAL 172
Query: 537 PAIVHIN 557
+ ++
Sbjct: 173 TMLSRVD 179
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 38.7 bits (86), Expect = 6e-04
Identities = 22/84 (26%), Positives = 42/84 (50%)
Frame = +3
Query: 306 EEYRNKHEVTVSGVEVHNPIQYFEEAXFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSGKN 485
+E E+T S E N + FEE + + G+ GY+ P+ +Q++ G++
Sbjct: 3 DEIMENVELTTS--EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRD 60
Query: 486 LXGVAQTGSGKTLDYILPAIVHIN 557
+ AQ+G+GKT + + + I+
Sbjct: 61 VIAQAQSGTGKTATFSIGILQSID 84
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 37.5 bits (83), Expect = 0.001
Identities = 20/58 (34%), Positives = 29/58 (50%)
Frame = +3
Query: 372 FEEAXFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLDYILPAI 545
F + ++ +K + EPT IQ + G+N G A+TGSGKT + LP I
Sbjct: 9 FSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPII 66
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 33.1 bits (72), Expect = 0.032
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +3
Query: 420 MGYKEPTPIQAQGWPIAMS--GKNLXGVAQTGSGKTLDYILPAI 545
M PT IQ+ P ++ K+ AQTGSGKTL Y+LP +
Sbjct: 157 MNISAPTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIV 200
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 30.3 bits (65), Expect = 0.22
Identities = 14/65 (21%), Positives = 32/65 (49%)
Frame = +3
Query: 363 IQYFEEAXFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLDYILPA 542
I F++ + G+ G++ P+ IQ + + +++ AQ+G+GKT + +
Sbjct: 18 IDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISV 77
Query: 543 IVHIN 557
+ I+
Sbjct: 78 LQKID 82
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 29.9 bits (64), Expect = 0.30
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = +3
Query: 339 SGVEVHNPIQYFEEAXFPDYVQXGVKTMGYKEPTPIQAQGW-PIAMSGKNLXGVAQTGSG 515
S ++ P + E A + + G+++ TP+Q + + + +N A+TG+G
Sbjct: 29 STMKSQQPTLFSEVASLSSTFKNSLSRAGFEKMTPVQQRVLNEVFPNEENAVVQAKTGTG 88
Query: 516 KTLDYILPA 542
KTL ++L A
Sbjct: 89 KTLAFLLVA 97
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 29.1 bits (62), Expect = 0.52
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +3
Query: 462 PIAMSGKNLXGVAQTGSGKTLDYILPAI 545
P+ G ++ A TGSGKTL Y++P +
Sbjct: 168 PMYSYGGDVCVSAATGSGKTLSYVIPIV 195
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 29.1 bits (62), Expect = 0.52
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +3
Query: 471 MSGKNLXGVAQTGSGKTLDYILPAIV 548
+SGK++ + TG GK+L Y LPA++
Sbjct: 532 LSGKDVFILMPTGGGKSLCYQLPAVI 557
>SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 105
Score = 27.9 bits (59), Expect = 1.2
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -2
Query: 434 FFVTHCLYTXLHIIRKXCFFKVLNRIMNLNATYSYLVFISIL 309
FF Y ++ I+ CFF +NR T+S +VF ++
Sbjct: 16 FFWKQSKYQSIYAIQIRCFFLTVNRTPIPKQTFSLIVFYILI 57
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 27.9 bits (59), Expect = 1.2
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +3
Query: 483 NLXGVAQTGSGKTLDYILPAIV 548
NL V TG GK+L +++PA++
Sbjct: 1208 NLITVLPTGGGKSLSFLIPALI 1229
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 27.9 bits (59), Expect = 1.2
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +3
Query: 483 NLXGVAQTGSGKTLDYILPAIV 548
NL V TG GK+L +++PA++
Sbjct: 1208 NLITVLPTGGGKSLSFLIPALI 1229
>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
Wis4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1401
Score = 26.6 bits (56), Expect = 2.8
Identities = 25/140 (17%), Positives = 54/140 (38%), Gaps = 4/140 (2%)
Frame = -2
Query: 470 SYRPALSLNGRRFFVTHCLYTXLHIIRKXCFFKVLNRIMNLNATYSYLVFISILFDFIW* 291
+Y L +G H L ++ F K ++ + + SY++ + + +W
Sbjct: 686 AYTANLERDGVFVIADHTLSENPEALKALLFSKDISNLETIQQNCSYVLILCPVHPIVWK 745
Query: 290 SFENCRMWIIKVFVERLE*NRIPIWAS----HVXPSREFFFPTKASRSSKSIATVAKPRR 123
+ F L+ NR+ I AS H+ ++ F + ++ + R
Sbjct: 746 G--RIEKVDVPDFSVDLKTNRVRIIASNKREHLQAAKSVFQSISGDLVTLAVECRSSITR 803
Query: 122 IIAEFVASSKFGTTVSTAII 63
+ EF+ SK +S+ ++
Sbjct: 804 VYKEFIRLSKLCMRISSTVV 823
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 26.2 bits (55), Expect = 3.7
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -2
Query: 269 WIIKVFVERLE*NRIPIWASHVXPSREF 186
W K+F ++ N+I +W +H P R F
Sbjct: 1165 WNDKIFGQQPNGNKILLWQNHERPPRPF 1192
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 26.2 bits (55), Expect = 3.7
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 294 PYEVEEYRNKHEVTVS 341
PYE++ YRNKH +S
Sbjct: 253 PYEIQVYRNKHWFPIS 268
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = +3
Query: 294 PYEVEEYRNKHEVTVSGVEVHNPIQYFEEAXFPDYVQXGVKTMG 425
P+E + + KH++ ++ V +Q +E+ F + ++ VK G
Sbjct: 256 PFEPPKPKTKHKLDITSVSEFEALQAYEKEKFQEMIKH-VKDAG 298
>SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 370
Score = 25.4 bits (53), Expect = 6.4
Identities = 17/58 (29%), Positives = 24/58 (41%)
Frame = +3
Query: 330 VTVSGVEVHNPIQYFEEAXFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQ 503
V V VE PI Y GV +GY + P G P+ ++GK + V +
Sbjct: 253 VCVKHVEKDQPIGYGGAYVTTRDSLIGVVAIGYGDGFPQVRNGCPVIINGKRVPTVGK 310
>SPCC338.13 |cog4||Golgi transport complex subunit Cog4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 738
Score = 25.0 bits (52), Expect = 8.5
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = -2
Query: 116 AEFVASSKFGTT-VSTAIIPITRHDYF 39
A F SS F T V+ ++IPI R+DY+
Sbjct: 448 AFFTVSSLFFTRFVNESLIPILRNDYY 474
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,298,137
Number of Sequences: 5004
Number of extensions: 47039
Number of successful extensions: 156
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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