Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0911
         (600 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein ...    63   6e-12
AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein pr...    25   1.9  
AY534996-1|AAT07394.1|  471|Anopheles gambiae XK-related b protein.    24   4.3  
AY578797-1|AAT07302.1|  304|Anopheles gambiae activin protein.         23   5.7  
AF043440-1|AAC05665.1|  234|Anopheles gambiae putative pupal-spe...    23   5.7  
AY805323-1|AAV66543.1|  459|Anopheles gambiae beta subunit-GABA-...    23   10.0 
AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.            23   10.0 

>AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein
           protein.
          Length = 596

 Score = 63.3 bits (147), Expect = 6e-12
 Identities = 30/76 (39%), Positives = 45/76 (59%)
 Frame = +3

Query: 327 EVTVSGVEVHNPIQYFEEAXFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQT 506
           +V VSG    + ++ FE +   + V   V+   Y +PTPIQ    PI ++G++L   AQT
Sbjct: 161 QVRVSGENPPDHVESFERSGLREEVMTNVRKSSYTKPTPIQRYAIPIILNGRDLMACAQT 220

Query: 507 GSGKTLDYILPAIVHI 554
           GSGKT  ++LP I H+
Sbjct: 221 GSGKTAAFMLPMIHHL 236


>AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein
           protein.
          Length = 476

 Score = 25.0 bits (52), Expect = 1.9
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 6/38 (15%)
 Frame = -1

Query: 201 ALQRILFSHQSLQILQ------IYCHRCQTETNYRRIC 106
           A +R+  SHQS  IL+      I CHRC+   + +R C
Sbjct: 180 AQKRMEKSHQSESILRVGPEKKITCHRCRKPGHMKRDC 217


>AY534996-1|AAT07394.1|  471|Anopheles gambiae XK-related b protein.
          Length = 471

 Score = 23.8 bits (49), Expect = 4.3
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -2

Query: 128 RRIIAEFVASSKFGTTVSTAIIPITRHDYFSDLVEDVYLNY 6
           RR+ A+  A ++F          I+   YF D+V DV L Y
Sbjct: 59  RRVRAKSKAMTEFLPLCDVLFNVISLAGYFCDVVFDVVLGY 99


>AY578797-1|AAT07302.1|  304|Anopheles gambiae activin protein.
          Length = 304

 Score = 23.4 bits (48), Expect = 5.7
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -1

Query: 90  WNHRFHGYYSNY 55
           W  R HGYY+NY
Sbjct: 197 WIIRPHGYYANY 208


>AF043440-1|AAC05665.1|  234|Anopheles gambiae putative
           pupal-specific cuticular proteinCP2d protein.
          Length = 234

 Score = 23.4 bits (48), Expect = 5.7
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 279 VLKRSPYEVEEYRNKHEVTVSGVEVHNPIQY 371
           V++R P  V+  +  H+V    V VH P+ +
Sbjct: 139 VVRREPSAVKIAQPVHKVIAQPVHVHAPVAH 169


>AY805323-1|AAV66543.1|  459|Anopheles gambiae beta
           subunit-GABA-A-gated chloride channelprotein.
          Length = 459

 Score = 22.6 bits (46), Expect = 10.0
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
 Frame = +3

Query: 270 HPTVLKRSPYEVEEYRNKHEVTVSGVEVH---NPIQYFEEAXFPDYVQXGVKTMGYKE 434
           +P   +    E+E Y      TVS V ++    PI+  EEA  P +   G +T   KE
Sbjct: 149 YPLDSQNCTVEIESYG----YTVSDVVMYWRSTPIRGVEEAELPQFTIIGYETNDRKE 202


>AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.
          Length = 3398

 Score = 22.6 bits (46), Expect = 10.0
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = +2

Query: 419  NGLQRTDAHSSSRLADSYVWKEFXWRSPNGFREN 520
            N ++R+ A S   + ++++   F W      REN
Sbjct: 3086 NHMERSSASSLHNMFNNWIKLPFEWLFSTSMREN 3119


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 573,359
Number of Sequences: 2352
Number of extensions: 11347
Number of successful extensions: 26
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 58029966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)