Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0911
(600 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical pr... 101 5e-22
Z81449-4|CAB03765.1| 811|Caenorhabditis elegans Hypothetical pr... 91 4e-19
U13070-1|AAK67224.1| 730|Caenorhabditis elegans Hypothetical pr... 83 1e-16
AF045641-1|AAK68386.1| 970|Caenorhabditis elegans Hypothetical ... 79 2e-15
AL034488-3|CAA22456.1| 504|Caenorhabditis elegans Hypothetical ... 73 2e-13
AC024810-3|AAU20831.1| 660|Caenorhabditis elegans Vasa- and bel... 68 6e-12
AC024810-2|AAK68520.1| 644|Caenorhabditis elegans Vasa- and bel... 68 6e-12
AC024810-1|AAF60764.1| 641|Caenorhabditis elegans Vasa- and bel... 68 6e-12
AC006665-5|AAF39907.1| 630|Caenorhabditis elegans Hypothetical ... 66 2e-11
AC024859-14|AAY43989.1| 643|Caenorhabditis elegans Hypothetical... 63 1e-10
AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA ... 53 2e-07
AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line hel... 53 2e-07
U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase pr... 52 3e-07
L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase pr... 52 3e-07
AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line hel... 52 3e-07
AC025726-23|AAK73934.1| 763|Caenorhabditis elegans Hypothetical... 50 2e-06
U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein. 47 9e-06
U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GL... 47 9e-06
AC024876-4|AAU05555.1| 825|Caenorhabditis elegans Hypothetical ... 47 9e-06
AC024876-3|AAU05556.1| 871|Caenorhabditis elegans Hypothetical ... 47 9e-06
AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line he... 47 9e-06
Z75546-3|CAA99891.1| 581|Caenorhabditis elegans Hypothetical pr... 46 2e-05
U80447-1|AAB37806.1| 746|Caenorhabditis elegans Hypothetical pr... 45 4e-05
AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ... 44 8e-05
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel... 44 8e-05
AC006661-5|AAF39890.2| 488|Caenorhabditis elegans Hypothetical ... 43 1e-04
AC006661-4|ABB88208.1| 561|Caenorhabditis elegans Hypothetical ... 43 1e-04
Z29115-1|CAA82362.1| 489|Caenorhabditis elegans Hypothetical pr... 42 3e-04
AC024753-1|AAF60456.1| 732|Caenorhabditis elegans Hypothetical ... 42 3e-04
AF067608-1|AAC17654.2| 544|Caenorhabditis elegans Hypothetical ... 42 3e-04
AC006605-1|AAK85443.1| 430|Caenorhabditis elegans Conserved ger... 40 0.001
EU051652-1|ABS85191.1| 973|Caenorhabditis elegans MEL-46 protein. 38 0.007
CU457744-1|CAM36366.2| 973|Caenorhabditis elegans Hypothetical ... 38 0.007
AF025451-3|AAB71200.2| 634|Caenorhabditis elegans Hypothetical ... 37 0.010
U80447-2|AAO38637.1| 579|Caenorhabditis elegans Hypothetical pr... 37 0.013
AF039720-12|AAB96704.1| 399|Caenorhabditis elegans Hypothetical... 36 0.017
Z50071-3|CAA90407.1| 613|Caenorhabditis elegans Hypothetical pr... 36 0.022
Z50071-2|CAA90406.1| 638|Caenorhabditis elegans Hypothetical pr... 36 0.022
Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical pr... 36 0.022
Z12116-1|CAA78102.1| 402|Caenorhabditis elegans protein ( C.ele... 36 0.029
U13876-3|AAA21170.1| 402|Caenorhabditis elegans Initiation fact... 36 0.029
AC024830-10|AAF59610.3| 728|Caenorhabditis elegans Hypothetical... 36 0.029
AC024844-2|AAK29954.2| 399|Caenorhabditis elegans Hypothetical ... 35 0.051
Z79752-5|CAB02082.3| 1119|Caenorhabditis elegans Hypothetical pr... 31 0.83
Z99710-10|CAN99659.1| 222|Caenorhabditis elegans Hypothetical p... 29 1.9
U13876-12|AAA21169.1| 363|Caenorhabditis elegans Hypothetical p... 29 1.9
Z68220-9|CAL64002.1| 312|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z68220-8|CAA92487.1| 221|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z22177-1|CAA80151.1| 578|Caenorhabditis elegans Hypothetical pr... 28 4.4
AC006714-20|AAK29723.2| 281|Caenorhabditis elegans Serpentine r... 28 4.4
AC006714-16|AAK29721.3| 281|Caenorhabditis elegans Serpentine r... 28 4.4
Z38112-4|CAA86232.1| 809|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z48045-7|CAA88098.1| 329|Caenorhabditis elegans Hypothetical pr... 27 7.7
U00052-13|AAW88393.1| 608|Caenorhabditis elegans Hypothetical p... 27 7.7
U00052-12|AAK21428.2| 631|Caenorhabditis elegans Hypothetical p... 27 7.7
L17337-1|AAP68928.1| 593|Caenorhabditis elegans Hypothetical pr... 27 7.7
>Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical
protein F58E10.3a protein.
Length = 561
Score = 101 bits (241), Expect = 5e-22
Identities = 46/116 (39%), Positives = 75/116 (64%)
Frame = +3
Query: 207 MRRPDWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEAX 386
+R DW + +L P K+FY + V +R YE++++ + ++VT+ G V P+ F EA
Sbjct: 77 LRDVDWSAENLTPIEKDFYHENAAVSRREQYEIDQWVSANQVTLEGRGVPRPVFEFNEAP 136
Query: 387 FPDYVQXGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLDYILPAIVHI 554
P + + +++PT IQ+ WPIAMSG+++ +A+TGSGKTL ++LPA+VHI
Sbjct: 137 LPGQIHELLYGK-FQKPTVIQSISWPIAMSGRDIISIAKTGSGKTLAFMLPALVHI 191
>Z81449-4|CAB03765.1| 811|Caenorhabditis elegans Hypothetical
protein C46F11.4 protein.
Length = 811
Score = 91.5 bits (217), Expect = 4e-19
Identities = 42/112 (37%), Positives = 64/112 (57%)
Frame = +3
Query: 219 DWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEAXFPDY 398
D + Q FNKNFY+ H + + +V +N + V G++ P+ F F
Sbjct: 216 DHSQIQYQKFNKNFYEEHEDIKRLHYMDVIRLQNTMNLRVGGLKPPRPVCSFAHFSFDKL 275
Query: 399 VQXGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLDYILPAIVHI 554
+ ++ Y++PTPIQA P A+SG+++ G+A+TGSGKT Y+ PAIVHI
Sbjct: 276 LMEAIRKSEYEQPTPIQAMAIPSALSGRDVLGIAKTGSGKTAAYLWPAIVHI 327
>U13070-1|AAK67224.1| 730|Caenorhabditis elegans Hypothetical
protein F01F1.7 protein.
Length = 730
Score = 83.0 bits (196), Expect = 1e-16
Identities = 37/81 (45%), Positives = 53/81 (65%)
Frame = +3
Query: 312 YRNKHEVTVSGVEVHNPIQYFEEAXFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSGKNLX 491
+R +++ G V P++ +EEA FPD V VK +GY EPTPIQ Q PI + +++
Sbjct: 283 FREDFNISIKGGRVPRPLRNWEEAGFPDEVYQAVKEIGYLEPTPIQRQAIPIGLQNRDVI 342
Query: 492 GVAQTGSGKTLDYILPAIVHI 554
GVA+TGSGKT ++LP +V I
Sbjct: 343 GVAETGSGKTAAFLLPLLVWI 363
>AF045641-1|AAK68386.1| 970|Caenorhabditis elegans Hypothetical
protein F53H1.1 protein.
Length = 970
Score = 79.4 bits (187), Expect = 2e-15
Identities = 41/117 (35%), Positives = 66/117 (56%), Gaps = 1/117 (0%)
Frame = +3
Query: 207 MRRPDWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEA 383
+ + D V + F KNFY + + + EV+ YR + + +TV G++ PI+ + +
Sbjct: 250 LAQTDHSKVYYRKFKKNFYIETEEIRRMTKAEVKAYREELDSITVKGIDCPKPIKTWAQC 309
Query: 384 XFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLDYILPAIVHI 554
+ +K Y +PT IQAQ P MSG+++ G+A+TGSGKTL ++LP HI
Sbjct: 310 GVNLKMMNVLKKFEYSKPTSIQAQAIPSIMSGRDVIGIAKTGSGKTLAFLLPMFRHI 366
>AL034488-3|CAA22456.1| 504|Caenorhabditis elegans Hypothetical
protein Y54G11A.3 protein.
Length = 504
Score = 72.5 bits (170), Expect = 2e-13
Identities = 32/74 (43%), Positives = 54/74 (72%), Gaps = 1/74 (1%)
Frame = +3
Query: 339 SGVEVHNPIQYFEEAXFPDYVQXG-VKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSG 515
S V++ P+ FE+A + G ++ G+++P+PIQ+Q WP+ +SG++ GV+QTGSG
Sbjct: 74 STVKIPPPVNSFEQAFGSNASIMGEIRKNGFEKPSPIQSQMWPLLLSGQDCIGVSQTGSG 133
Query: 516 KTLDYILPAIVHIN 557
KTL ++LPA++HI+
Sbjct: 134 KTLAFLLPALLHID 147
>AC024810-3|AAU20831.1| 660|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform c protein.
Length = 660
Score = 67.7 bits (158), Expect = 6e-12
Identities = 35/83 (42%), Positives = 47/83 (56%)
Frame = +3
Query: 306 EEYRNKHEVTVSGVEVHNPIQYFEEAXFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSGKN 485
++Y N V VSG V I++F EA F V V GY +PTP+Q P ++ ++
Sbjct: 120 DKYENI-PVEVSGDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRD 178
Query: 486 LXGVAQTGSGKTLDYILPAIVHI 554
L AQTGSGKT ++LP I HI
Sbjct: 179 LMSCAQTGSGKTAAFLLPIIQHI 201
>AC024810-2|AAK68520.1| 644|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform b protein.
Length = 644
Score = 67.7 bits (158), Expect = 6e-12
Identities = 35/83 (42%), Positives = 47/83 (56%)
Frame = +3
Query: 306 EEYRNKHEVTVSGVEVHNPIQYFEEAXFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSGKN 485
++Y N V VSG V I++F EA F V V GY +PTP+Q P ++ ++
Sbjct: 104 DKYENI-PVEVSGDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRD 162
Query: 486 LXGVAQTGSGKTLDYILPAIVHI 554
L AQTGSGKT ++LP I HI
Sbjct: 163 LMSCAQTGSGKTAAFLLPIIQHI 185
>AC024810-1|AAF60764.1| 641|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform a protein.
Length = 641
Score = 67.7 bits (158), Expect = 6e-12
Identities = 35/83 (42%), Positives = 47/83 (56%)
Frame = +3
Query: 306 EEYRNKHEVTVSGVEVHNPIQYFEEAXFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSGKN 485
++Y N V VSG V I++F EA F V V GY +PTP+Q P ++ ++
Sbjct: 101 DKYENI-PVEVSGDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRD 159
Query: 486 LXGVAQTGSGKTLDYILPAIVHI 554
L AQTGSGKT ++LP I HI
Sbjct: 160 LMSCAQTGSGKTAAFLLPIIQHI 182
>AC006665-5|AAF39907.1| 630|Caenorhabditis elegans Hypothetical
protein H27M09.1 protein.
Length = 630
Score = 65.7 bits (153), Expect = 2e-11
Identities = 33/95 (34%), Positives = 54/95 (56%), Gaps = 1/95 (1%)
Frame = +3
Query: 267 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEAXFP-DYVQXGVKTMGYKEPTP 443
P + ++S + E R + ++ G + PI F E FP ++ K G PT
Sbjct: 156 PPGHIRRQSQEDYEIQRKRLGISCEGDHIPPPIGSFLEMKFPKSLLEFMQKQKGIVTPTA 215
Query: 444 IQAQGWPIAMSGKNLXGVAQTGSGKTLDYILPAIV 548
IQ QG P+A+SG+++ G+A TGSGKT+ ++LP ++
Sbjct: 216 IQIQGIPVALSGRDMIGIASTGSGKTMTFVLPLVM 250
>AC024859-14|AAY43989.1| 643|Caenorhabditis elegans Hypothetical
protein Y71H2AM.19 protein.
Length = 643
Score = 63.3 bits (147), Expect = 1e-10
Identities = 26/72 (36%), Positives = 41/72 (56%)
Frame = +3
Query: 330 VTVSGVEVHNPIQYFEEAXFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTG 509
V +G +V PI F + ++++ +KT GY PTP+Q P G++L AQTG
Sbjct: 154 VEATGDDVPQPISLFSDLSLHEWIEENIKTAGYDRPTPVQKYSIPALQGGRDLMSCAQTG 213
Query: 510 SGKTLDYILPAI 545
SGKT +++P +
Sbjct: 214 SGKTAAFLVPLV 225
>AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA
helicase-3 protein.
Length = 720
Score = 52.8 bits (121), Expect = 2e-07
Identities = 23/60 (38%), Positives = 34/60 (56%)
Frame = +3
Query: 360 PIQYFEEAXFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLDYILP 539
P + F ++ P ++ V+ GY TPIQ P+ GK++ AQTGSGKT ++LP
Sbjct: 296 PCKSFSDSDIPQSMRRNVERAGYTRTTPIQQYTLPLVADGKDILACAQTGSGKTAAFLLP 355
>AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line
helicase protein 3 protein.
Length = 720
Score = 52.8 bits (121), Expect = 2e-07
Identities = 23/60 (38%), Positives = 34/60 (56%)
Frame = +3
Query: 360 PIQYFEEAXFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLDYILP 539
P + F ++ P ++ V+ GY TPIQ P+ GK++ AQTGSGKT ++LP
Sbjct: 296 PCKSFSDSDIPQSMRRNVERAGYTRTTPIQQYTLPLVADGKDILACAQTGSGKTAAFLLP 355
>U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 52.0 bits (119), Expect = 3e-07
Identities = 24/65 (36%), Positives = 35/65 (53%)
Frame = +3
Query: 360 PIQYFEEAXFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLDYILP 539
P + F EA + +Q V GY + TPIQ P+ G ++ AQTGSGKT ++LP
Sbjct: 339 PCKTFAEANLTETMQKNVAHAGYSKTTPIQQYALPLVHQGYDIMACAQTGSGKTAAFLLP 398
Query: 540 AIVHI 554
+ +
Sbjct: 399 IMTRL 403
>L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 52.0 bits (119), Expect = 3e-07
Identities = 24/65 (36%), Positives = 35/65 (53%)
Frame = +3
Query: 360 PIQYFEEAXFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLDYILP 539
P + F EA + +Q V GY + TPIQ P+ G ++ AQTGSGKT ++LP
Sbjct: 339 PCKTFAEANLTETMQKNVAHAGYSKTTPIQQYALPLVHQGYDIMACAQTGSGKTAAFLLP 398
Query: 540 AIVHI 554
+ +
Sbjct: 399 IMTRL 403
>AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line
helicase protein 1 protein.
Length = 763
Score = 52.0 bits (119), Expect = 3e-07
Identities = 24/65 (36%), Positives = 35/65 (53%)
Frame = +3
Query: 360 PIQYFEEAXFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLDYILP 539
P + F EA + +Q V GY + TPIQ P+ G ++ AQTGSGKT ++LP
Sbjct: 339 PCKTFAEANLTETMQKNVAHAGYSKTTPIQQYALPLVHQGYDIMACAQTGSGKTAAFLLP 398
Query: 540 AIVHI 554
+ +
Sbjct: 399 IMTRL 403
>AC025726-23|AAK73934.1| 763|Caenorhabditis elegans Hypothetical
protein Y71G12B.8 protein.
Length = 763
Score = 49.6 bits (113), Expect = 2e-06
Identities = 21/58 (36%), Positives = 33/58 (56%)
Frame = +3
Query: 372 FEEAXFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLDYILPAI 545
FE+ + GY +PTPIQ P+A++GK++ A TG+GKT ++LP +
Sbjct: 150 FEQMNLSRQILKACSGAGYSDPTPIQQACIPVALTGKDICACAATGTGKTAAFVLPIL 207
>U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein.
Length = 974
Score = 47.2 bits (107), Expect = 9e-06
Identities = 22/61 (36%), Positives = 33/61 (54%)
Frame = +3
Query: 372 FEEAXFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLDYILPAIVH 551
F EA + ++ V GY + TPIQ P+ G ++ AQTGSGKT ++LP +
Sbjct: 554 FSEANLGETMKKNVAHAGYTKTTPIQQYTLPLIHQGHDIMACAQTGSGKTAAFLLPIMAR 613
Query: 552 I 554
+
Sbjct: 614 L 614
>U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GLH-2
protein.
Length = 974
Score = 47.2 bits (107), Expect = 9e-06
Identities = 22/61 (36%), Positives = 33/61 (54%)
Frame = +3
Query: 372 FEEAXFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLDYILPAIVH 551
F EA + ++ V GY + TPIQ P+ G ++ AQTGSGKT ++LP +
Sbjct: 554 FSEANLGETMKKNVAHAGYTKTTPIQQYTLPLIHQGHDIMACAQTGSGKTAAFLLPIMAR 613
Query: 552 I 554
+
Sbjct: 614 L 614
>AC024876-4|AAU05555.1| 825|Caenorhabditis elegans Hypothetical
protein Y94H6A.5a protein.
Length = 825
Score = 47.2 bits (107), Expect = 9e-06
Identities = 18/49 (36%), Positives = 32/49 (65%)
Frame = +3
Query: 399 VQXGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLDYILPAI 545
V ++ G+ +PTPIQ + P M GK++ +++TGSGKT +++P +
Sbjct: 35 VYKAIEKKGFNQPTPIQRKTIPCIMDGKDVVAMSRTGSGKTAAFVIPML 83
>AC024876-3|AAU05556.1| 871|Caenorhabditis elegans Hypothetical
protein Y94H6A.5b protein.
Length = 871
Score = 47.2 bits (107), Expect = 9e-06
Identities = 18/49 (36%), Positives = 32/49 (65%)
Frame = +3
Query: 399 VQXGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLDYILPAI 545
V ++ G+ +PTPIQ + P M GK++ +++TGSGKT +++P +
Sbjct: 35 VYKAIEKKGFNQPTPIQRKTIPCIMDGKDVVAMSRTGSGKTAAFVIPML 83
>AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line
helicase protein 2 protein.
Length = 974
Score = 47.2 bits (107), Expect = 9e-06
Identities = 22/61 (36%), Positives = 33/61 (54%)
Frame = +3
Query: 372 FEEAXFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLDYILPAIVH 551
F EA + ++ V GY + TPIQ P+ G ++ AQTGSGKT ++LP +
Sbjct: 554 FSEANLGETMKKNVAHAGYTKTTPIQQYTLPLIHQGHDIMACAQTGSGKTAAFLLPIMAR 613
Query: 552 I 554
+
Sbjct: 614 L 614
>Z75546-3|CAA99891.1| 581|Caenorhabditis elegans Hypothetical
protein R05D11.4 protein.
Length = 581
Score = 46.4 bits (105), Expect = 2e-05
Identities = 27/92 (29%), Positives = 43/92 (46%)
Frame = +3
Query: 279 VLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEAXFPDYVQXGVKTMGYKEPTPIQAQG 458
V KR +++ R + + G + N I F ++ + + ++P+PIQ Q
Sbjct: 97 VEKRMQKLLDDIRRTNRIFTWGDHLPNIILRFSDSSMSPSLLNRLSENSIRQPSPIQMQS 156
Query: 459 WPIAMSGKNLXGVAQTGSGKTLDYILPAIVHI 554
P +N+ A TGSGKTL + LP I I
Sbjct: 157 IPFMTERRNVLASAPTGSGKTLAFALPVIDEI 188
>U80447-1|AAB37806.1| 746|Caenorhabditis elegans Hypothetical
protein F55F8.2a protein.
Length = 746
Score = 45.2 bits (102), Expect = 4e-05
Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Frame = +3
Query: 390 PDYVQXGVKTMGYKEPTPIQAQGWPIAMSGK-NLXGVAQTGSGKTLDYILPAIVHI 554
P+ V ++ MG+ EPT IQ+ P A+ + ++ G A+TGSGKTL + +P + +
Sbjct: 163 PNEVLEAIEQMGFSEPTEIQSAVLPAAVRDRQDVLGAAETGSGKTLAFGIPLVARL 218
>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
helicase-4 protein.
Length = 1156
Score = 44.0 bits (99), Expect = 8e-05
Identities = 22/82 (26%), Positives = 39/82 (47%)
Frame = +3
Query: 309 EYRNKHEVTVSGVEVHNPIQYFEEAXFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSGKNL 488
++ K + VE+ + + P + +K M PTPIQ + M G ++
Sbjct: 717 DFDQKVVASTGKVEIPDMASFDGFKILPQDLHDNLKRMKMNRPTPIQRASFFPIMHGNDV 776
Query: 489 XGVAQTGSGKTLDYILPAIVHI 554
A TGSGKTL +++P ++ +
Sbjct: 777 VACAHTGSGKTLAFLIPFVIKL 798
>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line
helicase protein 4 protein.
Length = 1156
Score = 44.0 bits (99), Expect = 8e-05
Identities = 22/82 (26%), Positives = 39/82 (47%)
Frame = +3
Query: 309 EYRNKHEVTVSGVEVHNPIQYFEEAXFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSGKNL 488
++ K + VE+ + + P + +K M PTPIQ + M G ++
Sbjct: 717 DFDQKVVASTGKVEIPDMASFDGFKILPQDLHDNLKRMKMNRPTPIQRASFFPIMHGNDV 776
Query: 489 XGVAQTGSGKTLDYILPAIVHI 554
A TGSGKTL +++P ++ +
Sbjct: 777 VACAHTGSGKTLAFLIPFVIKL 798
>AC006661-5|AAF39890.2| 488|Caenorhabditis elegans Hypothetical
protein H20J04.4a protein.
Length = 488
Score = 43.2 bits (97), Expect = 1e-04
Identities = 19/58 (32%), Positives = 33/58 (56%)
Frame = +3
Query: 372 FEEAXFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLDYILPAI 545
F + ++ ++TM K TP+QA P + G ++ G A+TG+GKTL + +P +
Sbjct: 91 FSQLGVCSWITQQLQTMQIKTATPVQAACIPKILEGSDILGCARTGTGKTLAFAIPIL 148
>AC006661-4|ABB88208.1| 561|Caenorhabditis elegans Hypothetical
protein H20J04.4b protein.
Length = 561
Score = 43.2 bits (97), Expect = 1e-04
Identities = 19/58 (32%), Positives = 33/58 (56%)
Frame = +3
Query: 372 FEEAXFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLDYILPAI 545
F + ++ ++TM K TP+QA P + G ++ G A+TG+GKTL + +P +
Sbjct: 91 FSQLGVCSWITQQLQTMQIKTATPVQAACIPKILEGSDILGCARTGTGKTLAFAIPIL 148
>Z29115-1|CAA82362.1| 489|Caenorhabditis elegans Hypothetical
protein T26G10.1 protein.
Length = 489
Score = 42.3 bits (95), Expect = 3e-04
Identities = 17/42 (40%), Positives = 29/42 (69%)
Frame = +3
Query: 420 MGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLDYILPAI 545
+G+ +P+ IQ P A+ GK++ G+A+TGSGKT + +P +
Sbjct: 62 LGWMKPSKIQQAALPHALQGKDVIGLAETGSGKTGAFAIPVL 103
>AC024753-1|AAF60456.1| 732|Caenorhabditis elegans Hypothetical
protein Y23H5B.6 protein.
Length = 732
Score = 42.3 bits (95), Expect = 3e-04
Identities = 18/46 (39%), Positives = 29/46 (63%)
Frame = +3
Query: 408 GVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLDYILPAI 545
G+K Y +PT IQ +++G ++ G A+TGSGKTL ++P +
Sbjct: 90 GLKDNDYTKPTEIQRDTIAYSLTGSDVVGAAKTGSGKTLALVIPVL 135
>AF067608-1|AAC17654.2| 544|Caenorhabditis elegans Hypothetical
protein B0511.6 protein.
Length = 544
Score = 41.9 bits (94), Expect = 3e-04
Identities = 20/45 (44%), Positives = 30/45 (66%)
Frame = +3
Query: 411 VKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLDYILPAI 545
V+ +G+ T IQA+ + GK++ A+TGSGKTL ++LPAI
Sbjct: 83 VQGLGFTTMTEIQAKSIDPLLEGKDVLASAKTGSGKTLAFLLPAI 127
>AC006605-1|AAK85443.1| 430|Caenorhabditis elegans Conserved
germline helicase protein1 protein.
Length = 430
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/61 (31%), Positives = 35/61 (57%)
Frame = +3
Query: 372 FEEAXFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLDYILPAIVH 551
FE+ + G+ G+++P+PIQ +A++G+++ A+ G+GKT Y +P I
Sbjct: 45 FEDFCLGRDLLMGIFEKGWEKPSPIQEASIGVALTGQDILARAKNGTGKTGAYCIPVIEK 104
Query: 552 I 554
I
Sbjct: 105 I 105
>EU051652-1|ABS85191.1| 973|Caenorhabditis elegans MEL-46 protein.
Length = 973
Score = 37.5 bits (83), Expect = 0.007
Identities = 14/49 (28%), Positives = 33/49 (67%)
Frame = +3
Query: 411 VKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLDYILPAIVHIN 557
+K + P+P+QA+ P+ + G+++ A++G+GKTL + + A+ +++
Sbjct: 37 LKNSQFDRPSPVQARAIPVGLLGRDMLVQAKSGTGKTLVFSVLAVENLD 85
>CU457744-1|CAM36366.2| 973|Caenorhabditis elegans Hypothetical
protein T06A10.1 protein.
Length = 973
Score = 37.5 bits (83), Expect = 0.007
Identities = 14/49 (28%), Positives = 33/49 (67%)
Frame = +3
Query: 411 VKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLDYILPAIVHIN 557
+K + P+P+QA+ P+ + G+++ A++G+GKTL + + A+ +++
Sbjct: 37 LKNSQFDRPSPVQARAIPVGLLGRDMLVQAKSGTGKTLVFSVLAVENLD 85
>AF025451-3|AAB71200.2| 634|Caenorhabditis elegans Hypothetical
protein C24H12.4a protein.
Length = 634
Score = 37.1 bits (82), Expect = 0.010
Identities = 15/58 (25%), Positives = 32/58 (55%)
Frame = +3
Query: 372 FEEAXFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLDYILPAI 545
F + + + + +G+++ +Q +A+ KN+ G A+TGSGKT +++P +
Sbjct: 91 FADFGLDERILKSIGELGWEKANQVQESVISLALENKNIMGRARTGSGKTGAFLIPLV 148
>U80447-2|AAO38637.1| 579|Caenorhabditis elegans Hypothetical
protein F55F8.2b protein.
Length = 579
Score = 36.7 bits (81), Expect = 0.013
Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Frame = +3
Query: 426 YKEPTPIQAQGWPIAMSGK-NLXGVAQTGSGKTLDYILPAIVHI 554
+ EPT IQ+ P A+ + ++ G A+TGSGKTL + +P + +
Sbjct: 8 FSEPTEIQSAVLPAAVRDRQDVLGAAETGSGKTLAFGIPLVARL 51
>AF039720-12|AAB96704.1| 399|Caenorhabditis elegans Hypothetical
protein F33D11.10 protein.
Length = 399
Score = 36.3 bits (80), Expect = 0.017
Identities = 15/63 (23%), Positives = 34/63 (53%)
Frame = +3
Query: 357 NPIQYFEEAXFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLDYIL 536
N I F++ + + G+ G+++P+ IQ + P + +++ AQ+G+GKT + +
Sbjct: 23 NVIPTFDKMGLREDLLRGIYAYGFEKPSAIQQRAVPAILKARDVIAQAQSGTGKTATFSI 82
Query: 537 PAI 545
+
Sbjct: 83 SVL 85
>Z50071-3|CAA90407.1| 613|Caenorhabditis elegans Hypothetical
protein T07D4.4c protein.
Length = 613
Score = 35.9 bits (79), Expect = 0.022
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = +3
Query: 363 IQYFEEAXFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSG--KNLXGVAQTGSGKTLDYIL 536
I F E V + TM ++ PT IQ P+ + NL AQ+G+GKT ++L
Sbjct: 208 ISSFRELRLKPEVLKALDTMNFQFPTRIQETALPLLLMEPPSNLIAQAQSGTGKTAAFVL 267
Query: 537 PAIVHIN 557
+ I+
Sbjct: 268 TMLCRID 274
>Z50071-2|CAA90406.1| 638|Caenorhabditis elegans Hypothetical
protein T07D4.4b protein.
Length = 638
Score = 35.9 bits (79), Expect = 0.022
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = +3
Query: 363 IQYFEEAXFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSG--KNLXGVAQTGSGKTLDYIL 536
I F E V + TM ++ PT IQ P+ + NL AQ+G+GKT ++L
Sbjct: 233 ISSFRELRLKPEVLKALDTMNFQFPTRIQETALPLLLMEPPSNLIAQAQSGTGKTAAFVL 292
Query: 537 PAIVHIN 557
+ I+
Sbjct: 293 TMLCRID 299
>Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical
protein T07D4.4a protein.
Length = 1022
Score = 35.9 bits (79), Expect = 0.022
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = +3
Query: 363 IQYFEEAXFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSG--KNLXGVAQTGSGKTLDYIL 536
I F E V + TM ++ PT IQ P+ + NL AQ+G+GKT ++L
Sbjct: 617 ISSFRELRLKPEVLKALDTMNFQFPTRIQETALPLLLMEPPSNLIAQAQSGTGKTAAFVL 676
Query: 537 PAIVHIN 557
+ I+
Sbjct: 677 TMLCRID 683
>Z12116-1|CAA78102.1| 402|Caenorhabditis elegans protein (
C.elegans mRNA for eIF-4A homologue. ).
Length = 402
Score = 35.5 bits (78), Expect = 0.029
Identities = 15/65 (23%), Positives = 36/65 (55%)
Frame = +3
Query: 363 IQYFEEAXFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLDYILPA 542
++ F++ + + G+ G+++P+ IQ + +GK++ AQ+G+GKT + +
Sbjct: 28 VESFDDMELKEELLRGIYGFGFEKPSAIQKRAIVPCTTGKDVIAQAQSGTGKTATFSVSI 87
Query: 543 IVHIN 557
+ I+
Sbjct: 88 LQRID 92
>U13876-3|AAA21170.1| 402|Caenorhabditis elegans Initiation factor
protein 1, isoforma protein.
Length = 402
Score = 35.5 bits (78), Expect = 0.029
Identities = 15/65 (23%), Positives = 36/65 (55%)
Frame = +3
Query: 363 IQYFEEAXFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLDYILPA 542
++ F++ + + G+ G+++P+ IQ + +GK++ AQ+G+GKT + +
Sbjct: 28 VESFDDMELKEELLRGIYGFGFEKPSAIQKRAIVPCTTGKDVIAQAQSGTGKTATFSVSI 87
Query: 543 IVHIN 557
+ I+
Sbjct: 88 LQRID 92
>AC024830-10|AAF59610.3| 728|Caenorhabditis elegans Hypothetical
protein Y55F3BR.1 protein.
Length = 728
Score = 35.5 bits (78), Expect = 0.029
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = +3
Query: 372 FEEAXFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLDYILP 539
FEE + + ++ + PT +Q++ P + G + A+TGSGKT + LP
Sbjct: 4 FEEFGIIPELSDALSSLNWTLPTAVQSEAIPAILGGADALIAAETGSGKTGAFSLP 59
>AC024844-2|AAK29954.2| 399|Caenorhabditis elegans Hypothetical
protein Y65B4A.6 protein.
Length = 399
Score = 34.7 bits (76), Expect = 0.051
Identities = 14/61 (22%), Positives = 33/61 (54%)
Frame = +3
Query: 363 IQYFEEAXFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLDYILPA 542
I F++ + + G+ G+++P+ IQ + P + +++ AQ+G+GKT + +
Sbjct: 25 IPTFDKMGLREDLLRGIYAYGFEKPSAIQQRAIPAILKARDVIAQAQSGTGKTATFSISV 84
Query: 543 I 545
+
Sbjct: 85 L 85
>Z79752-5|CAB02082.3| 1119|Caenorhabditis elegans Hypothetical
protein D2005.5 protein.
Length = 1119
Score = 30.7 bits (66), Expect = 0.83
Identities = 20/44 (45%), Positives = 23/44 (52%)
Frame = +3
Query: 468 AMSGKNLXGVAQTGSGKTLDYILPAIVHIN*PTGYSER*WVXLL 599
A+ GKN VA TGSGKT I A+ HI T + V LL
Sbjct: 382 ALEGKNCVIVAPTGSGKTEVAIYAALKHIEERTSQGKPSRVVLL 425
>Z99710-10|CAN99659.1| 222|Caenorhabditis elegans Hypothetical
protein F08A8.8 protein.
Length = 222
Score = 29.5 bits (63), Expect = 1.9
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +1
Query: 73 VETVVPNLEEATNSAIIRLGLATVAIDLEDLEALVGKKN 189
+ETV+ LE N +RL A VA E LE++ GK N
Sbjct: 71 IETVILALEAGMNLEDVRLEFAHVATREEILESVFGKLN 109
>U13876-12|AAA21169.1| 363|Caenorhabditis elegans Hypothetical
protein F57B9.3 protein.
Length = 363
Score = 29.5 bits (63), Expect = 1.9
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +3
Query: 408 GVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTL 524
G+ G+++P+ IQ +GK++ +Q GSGKT+
Sbjct: 10 GIYGFGFEKPSAIQKSAVAPCTTGKDVTIQSQAGSGKTV 48
>Z68220-9|CAL64002.1| 312|Caenorhabditis elegans Hypothetical
protein T20D3.5b protein.
Length = 312
Score = 29.1 bits (62), Expect = 2.5
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -2
Query: 128 RRIIAEFVASSKFGTTVSTAIIPI 57
+++I +FVA S G T+STA P+
Sbjct: 220 QQLIGDFVAGSLLGATISTAFFPL 243
>Z68220-8|CAA92487.1| 221|Caenorhabditis elegans Hypothetical
protein T20D3.5a protein.
Length = 221
Score = 29.1 bits (62), Expect = 2.5
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -2
Query: 128 RRIIAEFVASSKFGTTVSTAIIPI 57
+++I +FVA S G T+STA P+
Sbjct: 129 QQLIGDFVAGSLLGATISTAFFPL 152
>Z22177-1|CAA80151.1| 578|Caenorhabditis elegans Hypothetical
protein ZK512.2 protein.
Length = 578
Score = 28.3 bits (60), Expect = 4.4
Identities = 17/59 (28%), Positives = 31/59 (52%)
Frame = +3
Query: 363 IQYFEEAXFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLDYILP 539
++ F E P+ ++ K+ YK T +Q ++ ++ + TGSGKTL ++LP
Sbjct: 10 LKTFREKLGPELLEVFDKS--YKSFTDVQVLSGTHLLNLSDVVVESPTGSGKTLAFVLP 66
>AC006714-20|AAK29723.2| 281|Caenorhabditis elegans Serpentine
receptor, class z protein9 protein.
Length = 281
Score = 28.3 bits (60), Expect = 4.4
Identities = 15/61 (24%), Positives = 31/61 (50%)
Frame = -2
Query: 485 ILSRHSYRPALSLNGRRFFVTHCLYTXLHIIRKXCFFKVLNRIMNLNATYSYLVFISILF 306
++ R +YR N + + + Y + +I F + + ++NLN T +L I+I+F
Sbjct: 26 LVYRKAYRFNSERNTATYPIVNSFYKKVALINALYFIESILIVVNLNVTNEWLNKIAIIF 85
Query: 305 D 303
+
Sbjct: 86 N 86
>AC006714-16|AAK29721.3| 281|Caenorhabditis elegans Serpentine
receptor, class z protein8 protein.
Length = 281
Score = 28.3 bits (60), Expect = 4.4
Identities = 15/61 (24%), Positives = 31/61 (50%)
Frame = -2
Query: 485 ILSRHSYRPALSLNGRRFFVTHCLYTXLHIIRKXCFFKVLNRIMNLNATYSYLVFISILF 306
++ R +YR N + + + Y + +I F + + ++NLN T +L I+I+F
Sbjct: 26 LVYRKAYRFNSERNTATYPIVNSFYKKVALINALYFIESILIVVNLNVTNEWLNKIAIIF 85
Query: 305 D 303
+
Sbjct: 86 N 86
>Z38112-4|CAA86232.1| 809|Caenorhabditis elegans Hypothetical
protein E03A3.2 protein.
Length = 809
Score = 27.9 bits (59), Expect = 5.9
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +3
Query: 504 TGSGKTLDYILPAIVH 551
TG+GK+L Y LPA+VH
Sbjct: 203 TGAGKSLCYQLPAVVH 218
>Z48045-7|CAA88098.1| 329|Caenorhabditis elegans Hypothetical
protein C41C4.1 protein.
Length = 329
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -1
Query: 216 GVACXALQRILFSHQSLQILQIYCHR-CQTETNYRRI 109
GVAC F + IL+++ HR C + YRR+
Sbjct: 100 GVACVLYDTGKFMRNNRSILEVWSHRFCGEKNEYRRM 136
>U00052-13|AAW88393.1| 608|Caenorhabditis elegans Hypothetical
protein K02F3.12b protein.
Length = 608
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +3
Query: 441 PIQAQGWPIAMSGKNLXGVAQTGSGKTLDYILPAIV 548
P+Q MS ++ + TG GK+L Y LPA++
Sbjct: 89 PLQRAAINAVMSKEDAVVILSTGGGKSLCYQLPALL 124
>U00052-12|AAK21428.2| 631|Caenorhabditis elegans Hypothetical
protein K02F3.12a protein.
Length = 631
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +3
Query: 441 PIQAQGWPIAMSGKNLXGVAQTGSGKTLDYILPAIV 548
P+Q MS ++ + TG GK+L Y LPA++
Sbjct: 112 PLQRAAINAVMSKEDAVVILSTGGGKSLCYQLPALL 147
>L17337-1|AAP68928.1| 593|Caenorhabditis elegans Hypothetical
protein ZK686.2 protein.
Length = 593
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +3
Query: 462 PIAMSGKNLXGVAQTGSGKTLDYILPAIVHI 554
P + +++ A TGSGKT+ Y+LP + +
Sbjct: 151 PPPLRPRDVAIAAPTGSGKTICYVLPVLAAV 181
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,515,420
Number of Sequences: 27780
Number of extensions: 256076
Number of successful extensions: 801
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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