Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0911
(600 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 138 2e-33
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 122 2e-28
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 122 2e-28
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 105 2e-23
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 98 3e-21
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 98 3e-21
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 98 3e-21
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 95 3e-20
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 95 4e-20
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 89 3e-18
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 79 2e-15
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 74 6e-14
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 67 7e-12
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 64 7e-11
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 64 9e-11
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 62 2e-10
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 61 6e-10
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 57 8e-09
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 56 1e-08
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 56 2e-08
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 56 2e-08
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 53 1e-07
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 53 2e-07
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 53 2e-07
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 52 3e-07
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 52 3e-07
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 50 2e-06
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 49 3e-06
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 49 3e-06
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 49 3e-06
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 46 1e-05
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 46 1e-05
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 46 1e-05
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 45 4e-05
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 44 6e-05
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 44 6e-05
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 44 6e-05
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 44 8e-05
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 44 8e-05
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 43 1e-04
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 43 1e-04
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 43 2e-04
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 43 2e-04
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 41 7e-04
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 41 7e-04
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 40 0.002
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 40 0.002
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 39 0.003
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 38 0.007
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 36 0.015
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 36 0.027
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 36 0.027
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 36 0.027
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 33 0.19
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 33 0.19
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 32 0.25
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 32 0.33
At3g05740.1 68416.m00644 DNA helicase (RECQI1) identical to DNA ... 31 0.58
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 31 0.58
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 31 0.77
At2g25460.1 68415.m03049 expressed protein 30 1.0
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 30 1.0
At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical... 30 1.0
At2g03210.1 68415.m00274 xyloglucan fucosyltransferase, putative... 30 1.3
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 29 1.8
At5g08110.1 68418.m00946 DEAD/DEAH box helicase, putative severa... 29 2.4
At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical... 29 3.1
At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical... 29 3.1
At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical... 29 3.1
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 28 4.1
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 28 4.1
At5g52530.2 68418.m06518 dentin sialophosphoprotein-related cont... 27 7.2
At5g52530.1 68418.m06517 dentin sialophosphoprotein-related cont... 27 7.2
At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative si... 27 7.2
At5g22960.1 68418.m02684 serine carboxypeptidase S10 family prot... 27 9.5
At3g29450.1 68416.m03699 hypothetical protein 27 9.5
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 138 bits (335), Expect = 2e-33
Identities = 61/111 (54%), Positives = 77/111 (69%)
Frame = +3
Query: 225 DSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEAXFPDYVQ 404
D L PF KNFY P V + EVEEYR E+TV G ++ P++ F + FPDYV
Sbjct: 52 DLDGLTPFEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRDVGFPDYVL 111
Query: 405 XGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLDYILPAIVHIN 557
VK G+ EPTPIQ+QGWP+AM G++L G+A+TGSGKTL Y+LPAIVH+N
Sbjct: 112 EEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIVHVN 162
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 122 bits (294), Expect = 2e-28
Identities = 51/108 (47%), Positives = 77/108 (71%)
Frame = +3
Query: 234 SLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEAXFPDYVQXGV 413
+L F KNFY PTV + +V YR + +++V G +V P++ F++A FPD + +
Sbjct: 121 NLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPDNILEAI 180
Query: 414 KTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLDYILPAIVHIN 557
+G+ EPTPIQAQGWP+A+ G++L G+A+TGSGKTL Y+LPA+VH++
Sbjct: 181 AKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVS 228
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 122 bits (294), Expect = 2e-28
Identities = 51/108 (47%), Positives = 77/108 (71%)
Frame = +3
Query: 234 SLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEAXFPDYVQXGV 413
+L F KNFY PTV + +V YR + +++V G +V P++ F++A FPD + +
Sbjct: 121 NLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPDNILEAI 180
Query: 414 KTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLDYILPAIVHIN 557
+G+ EPTPIQAQGWP+A+ G++L G+A+TGSGKTL Y+LPA+VH++
Sbjct: 181 AKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVS 228
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 105 bits (253), Expect = 2e-23
Identities = 44/112 (39%), Positives = 70/112 (62%)
Frame = +3
Query: 219 DWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEAXFPDY 398
D S+ +P NK+FY+ ++ + E +YR + + VSG +VH P++ FE+ F
Sbjct: 179 DHSSIDYEPINKDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQ 238
Query: 399 VQXGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLDYILPAIVHI 554
+ +K Y++PT IQ Q PI +SG+++ G+A+TGSGKT ++LP IVHI
Sbjct: 239 IMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVHI 290
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 98.3 bits (234), Expect = 3e-21
Identities = 43/96 (44%), Positives = 60/96 (62%)
Frame = +3
Query: 267 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEAXFPDYVQXGVKTMGYKEPTPI 446
P P+ S E Y +HE+TVSG +V P+ FE FP + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 447 QAQGWPIAMSGKNLXGVAQTGSGKTLDYILPAIVHI 554
QAQ WPIAM G+++ +A+TGSGKTL Y++P +H+
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHL 220
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 98.3 bits (234), Expect = 3e-21
Identities = 43/96 (44%), Positives = 60/96 (62%)
Frame = +3
Query: 267 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEAXFPDYVQXGVKTMGYKEPTPI 446
P P+ S E Y +HE+TVSG +V P+ FE FP + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 447 QAQGWPIAMSGKNLXGVAQTGSGKTLDYILPAIVHI 554
QAQ WPIAM G+++ +A+TGSGKTL Y++P +H+
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHL 220
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 98.3 bits (234), Expect = 3e-21
Identities = 43/96 (44%), Positives = 60/96 (62%)
Frame = +3
Query: 267 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEAXFPDYVQXGVKTMGYKEPTPI 446
P P+ S E Y +HE+TVSG +V P+ FE FP + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 447 QAQGWPIAMSGKNLXGVAQTGSGKTLDYILPAIVHI 554
QAQ WPIAM G+++ +A+TGSGKTL Y++P +H+
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHL 220
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 95.1 bits (226), Expect = 3e-20
Identities = 44/112 (39%), Positives = 66/112 (58%)
Frame = +3
Query: 219 DWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEAXFPDY 398
D + +PF KNFY + + + V YR + E+ V G +V PIQ++ +
Sbjct: 347 DHSKIEYEPFRKNFYIEVKDISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSK 406
Query: 399 VQXGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLDYILPAIVHI 554
+ +K + Y++P PIQAQ PI MSG++ GVA+TGSGKTL ++LP + HI
Sbjct: 407 ILDTLKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHI 458
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 94.7 bits (225), Expect = 4e-20
Identities = 43/112 (38%), Positives = 66/112 (58%)
Frame = +3
Query: 219 DWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEAXFPDY 398
D + +PF KNFY + + + EV YR + E+ V G +V PI+++ +
Sbjct: 480 DHSKIEYEPFRKNFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSK 539
Query: 399 VQXGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLDYILPAIVHI 554
+ +K + Y++P PIQ Q PI MSG++ GVA+TGSGKTL ++LP + HI
Sbjct: 540 ILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHI 591
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 88.6 bits (210), Expect = 3e-18
Identities = 43/104 (41%), Positives = 62/104 (59%), Gaps = 4/104 (3%)
Frame = +3
Query: 249 NKNFYDPH----PTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEAXFPDYVQXGVK 416
NK+ PH P V SP E+ YR +HEVT +G + P FE + P + +
Sbjct: 394 NKSLVRPHFVTSPDVPHLSPVEI--YRKQHEVTTTGENIPAPYITFESSGLPPEILRELL 451
Query: 417 TMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLDYILPAIV 548
+ G+ PTPIQAQ WPIA+ +++ +A+TGSGKTL Y++PA +
Sbjct: 452 SAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFI 495
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 79.4 bits (187), Expect = 2e-15
Identities = 37/97 (38%), Positives = 60/97 (61%)
Frame = +3
Query: 258 FYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEAXFPDYVQXGVKTMGYKEP 437
++ P V K S +++ R + +TV+G ++ PI+ F + FP + +K G P
Sbjct: 61 WWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLLRMLKDKGIMHP 120
Query: 438 TPIQAQGWPIAMSGKNLXGVAQTGSGKTLDYILPAIV 548
TPIQ QG P+ +SG+++ G+A TGSGKTL ++LP I+
Sbjct: 121 TPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMII 157
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 74.1 bits (174), Expect = 6e-14
Identities = 35/96 (36%), Positives = 59/96 (61%)
Frame = +3
Query: 261 YDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEAXFPDYVQXGVKTMGYKEPT 440
+ P + K S + + R + + V+G ++ PI+ F++ FP V +K G +PT
Sbjct: 111 WKPPLHIRKMSSKQRDLIRKQWHIIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPT 170
Query: 441 PIQAQGWPIAMSGKNLXGVAQTGSGKTLDYILPAIV 548
PIQ QG P+ ++G+++ G+A TGSGKTL ++LP I+
Sbjct: 171 PIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPMIM 206
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 67.3 bits (157), Expect = 7e-12
Identities = 35/87 (40%), Positives = 55/87 (63%), Gaps = 2/87 (2%)
Frame = +3
Query: 300 EVEEYRNKHEVTVSGVEV--HNPIQYFEEAXFPDYVQXGVKTMGYKEPTPIQAQGWPIAM 473
E E + K VT GVE + ++ F E+ P+ V KT +++P+PIQ+ WP +
Sbjct: 92 EGESEQQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLL 149
Query: 474 SGKNLXGVAQTGSGKTLDYILPAIVHI 554
G++L G+A+TGSGKTL + +PAI+H+
Sbjct: 150 DGRDLIGIAKTGSGKTLAFGIPAIMHV 176
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 64.1 bits (149), Expect = 7e-11
Identities = 24/48 (50%), Positives = 36/48 (75%)
Frame = +3
Query: 411 VKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLDYILPAIVHI 554
V + G+ P+PIQAQ WPIAM +++ +A+TGSGKTL Y++P +H+
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHL 291
Score = 32.7 bits (71), Expect = 0.19
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +3
Query: 306 EEYRNKHEVTVSGVEVHNPIQYFEEAXFPD 395
E Y KHE+TVSG +V P+ FE P+
Sbjct: 141 EAYCRKHEITVSGGQVPPPLMSFEATGLPN 170
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 63.7 bits (148), Expect = 9e-11
Identities = 25/82 (30%), Positives = 49/82 (59%)
Frame = +3
Query: 312 YRNKHEVTVSGVEVHNPIQYFEEAXFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSGKNLX 491
+R ++ G + P++ +EE+ + V+ GYK+P+PIQ P+ + +++
Sbjct: 295 FREDFNISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVI 354
Query: 492 GVAQTGSGKTLDYILPAIVHIN 557
G+A+TGSGKT ++LP + +I+
Sbjct: 355 GIAETGSGKTAAFVLPMLAYIS 376
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 62.5 bits (145), Expect = 2e-10
Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
Frame = +3
Query: 315 RNKHEVTVSGVEVHNPIQYFEEAXF----PDYVQXGVKTMGYKEPTPIQAQGWPIAMSGK 482
R ++ + VSG + P++ F E Y+ + +G+KEPTPIQ Q PI +SG+
Sbjct: 120 RKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGR 179
Query: 483 NLXGVAQTGSGKTLDYILPAIVHIN*PT 566
A TGSGKT +I P ++ + P+
Sbjct: 180 ECFACAPTGSGKTFAFICPMLIKLKRPS 207
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 60.9 bits (141), Expect = 6e-10
Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Frame = +3
Query: 291 SPYEVEEYRNKHEVTVSGV--EVHNPIQYFEEAXFPDYVQXGVKTMGYKEPTPIQAQGWP 464
S ++ + R K ++ V G V P+ F P + ++T GY PTPIQ Q P
Sbjct: 83 SSHDAQLLRRKLDIHVQGQGSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIP 142
Query: 465 IAMSGKNLXGVAQTGSGKTLDYILPAI 545
A++GK+L A TGSGKT +++P I
Sbjct: 143 AALTGKSLLASADTGSGKTASFLVPII 169
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 57.2 bits (132), Expect = 8e-09
Identities = 32/115 (27%), Positives = 51/115 (44%), Gaps = 3/115 (2%)
Frame = +3
Query: 210 RRPDWD--SVSLQPFNKNFYDPHPTVLKRSPYEVE-EYRNKHEVTVSGVEVHNPIQYFEE 380
R WD + PF + +P P ++ + + + SG V P+ F E
Sbjct: 104 RSGGWDRREREVNPFENDDSEPEPAFTEQDNTVINFDAYEDIPIETSGDNVPPPVNTFAE 163
Query: 381 AXFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLDYILPAI 545
+ + ++ Y +PTP+Q PI + G++L AQTGSGKT + P I
Sbjct: 164 IDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPII 218
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 56.4 bits (130), Expect = 1e-08
Identities = 30/71 (42%), Positives = 41/71 (57%)
Frame = +3
Query: 333 TVSGVEVHNPIQYFEEAXFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGS 512
TV GV H F E + +T+GYK+PTPIQA P+A++G++L A TGS
Sbjct: 158 TVDGVSFH--ADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGS 215
Query: 513 GKTLDYILPAI 545
GKT + LP +
Sbjct: 216 GKTAAFALPTL 226
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 55.6 bits (128), Expect = 2e-08
Identities = 31/102 (30%), Positives = 50/102 (49%)
Frame = +3
Query: 240 QPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEAXFPDYVQXGVKT 419
+P K T K EVE+ + ++ + + + FE D +K
Sbjct: 115 EPKKKKKKQRKDTEAKSEEEEVEDKEEEKKLEETSIMTNKT---FESLSLSDNTYKSIKE 171
Query: 420 MGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLDYILPAI 545
MG+ T IQA+ P M G+++ G A+TGSGKTL +++PA+
Sbjct: 172 MGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPAV 213
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 55.6 bits (128), Expect = 2e-08
Identities = 35/115 (30%), Positives = 50/115 (43%), Gaps = 3/115 (2%)
Frame = +3
Query: 210 RRPDWD--SVSLQPF-NKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEE 380
R WD PF N DP + + E Y + + SG V P+ F E
Sbjct: 92 RSGGWDRRDTETNPFGNDGNADPAVNEQENTVINFEAYEDI-PIETSGDNVPPPVNTFAE 150
Query: 381 AXFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLDYILPAI 545
+ + ++ Y +PTP+Q PI +G++L AQTGSGKT + P I
Sbjct: 151 IDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTGSGKTAAFCFPII 205
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 53.2 bits (122), Expect = 1e-07
Identities = 31/82 (37%), Positives = 42/82 (51%)
Frame = +3
Query: 300 EVEEYRNKHEVTVSGVEVHNPIQYFEEAXFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSG 479
EVEE RN E E P + FEE + + G ++PT IQ P + G
Sbjct: 25 EVEEQRNDREQEEEQKEEEAP-KSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEG 83
Query: 480 KNLXGVAQTGSGKTLDYILPAI 545
K++ A+TGSGKTL Y+LP +
Sbjct: 84 KDVVARAKTGSGKTLAYLLPLL 105
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 52.8 bits (121), Expect = 2e-07
Identities = 25/72 (34%), Positives = 37/72 (51%)
Frame = +3
Query: 330 VTVSGVEVHNPIQYFEEAXFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTG 509
V SG +V P+ F + D + ++ Y PTP+Q PI ++ ++L AQTG
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTG 198
Query: 510 SGKTLDYILPAI 545
SGKT + P I
Sbjct: 199 SGKTAAFCFPII 210
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 52.8 bits (121), Expect = 2e-07
Identities = 25/72 (34%), Positives = 37/72 (51%)
Frame = +3
Query: 330 VTVSGVEVHNPIQYFEEAXFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTG 509
V SG +V P+ F + D + ++ Y PTP+Q PI ++ ++L AQTG
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTG 198
Query: 510 SGKTLDYILPAI 545
SGKT + P I
Sbjct: 199 SGKTAAFCFPII 210
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 52.0 bits (119), Expect = 3e-07
Identities = 23/66 (34%), Positives = 40/66 (60%)
Frame = +3
Query: 348 EVHNPIQYFEEAXFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLD 527
E + ++ F E + + + +G+K P+ IQA+ P A+ GK++ G+AQTGSGKT
Sbjct: 3 EENEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGA 62
Query: 528 YILPAI 545
+ +P +
Sbjct: 63 FAIPIL 68
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 52.0 bits (119), Expect = 3e-07
Identities = 23/58 (39%), Positives = 35/58 (60%)
Frame = +3
Query: 372 FEEAXFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLDYILPAI 545
FE V +K GYK PTPIQ + P+ +SG ++ +A+TGSGKT +++P +
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPML 87
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 49.6 bits (113), Expect = 2e-06
Identities = 23/60 (38%), Positives = 37/60 (61%)
Frame = +3
Query: 372 FEEAXFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLDYILPAIVH 551
FE ++ K +G ++PTP+Q P ++G+++ G+AQTGSGKT + LP I+H
Sbjct: 60 FEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALP-ILH 118
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 48.8 bits (111), Expect = 3e-06
Identities = 20/61 (32%), Positives = 37/61 (60%)
Frame = +3
Query: 363 IQYFEEAXFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLDYILPA 542
++ F + D + G+K Y + T +Q+ P A+ G+++ G A+TGSGKTL +++P
Sbjct: 70 VRKFAQLPISDKTKRGLKDAKYVDMTDVQSAAIPHALCGRDILGAARTGSGKTLAFVIPI 129
Query: 543 I 545
+
Sbjct: 130 L 130
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 48.8 bits (111), Expect = 3e-06
Identities = 23/81 (28%), Positives = 44/81 (54%)
Frame = +3
Query: 303 VEEYRNKHEVTVSGVEVHNPIQYFEEAXFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSGK 482
+E+ ++ + + G + + F+ + +K MG++ T IQA + GK
Sbjct: 69 MEDGEDEKNIVIVGKGIMTNVT-FDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGK 127
Query: 483 NLXGVAQTGSGKTLDYILPAI 545
++ G A+TGSGKTL +++PA+
Sbjct: 128 DVLGAARTGSGKTLAFLIPAV 148
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 48.8 bits (111), Expect = 3e-06
Identities = 20/45 (44%), Positives = 32/45 (71%)
Frame = +3
Query: 420 MGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLDYILPAIVHI 554
MG++ PT +QAQ P+ +SG+++ A TG+GKT+ Y+ P I H+
Sbjct: 48 MGFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIAYLAPLIHHL 92
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 46.4 bits (105), Expect = 1e-05
Identities = 19/62 (30%), Positives = 37/62 (59%)
Frame = +3
Query: 372 FEEAXFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLDYILPAIVH 551
FE+ + G+ G++ P+PIQ + PIA++G+++ A+ G+GKT + +P +
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK 192
Query: 552 IN 557
I+
Sbjct: 193 ID 194
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 46.4 bits (105), Expect = 1e-05
Identities = 19/62 (30%), Positives = 37/62 (59%)
Frame = +3
Query: 372 FEEAXFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLDYILPAIVH 551
FE+ + G+ G++ P+PIQ + PIA++G+++ A+ G+GKT + +P +
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK 192
Query: 552 IN 557
I+
Sbjct: 193 ID 194
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 46.4 bits (105), Expect = 1e-05
Identities = 22/61 (36%), Positives = 33/61 (54%)
Frame = +3
Query: 372 FEEAXFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLDYILPAIVH 551
FEE PD + ++ G+ PT +Q+ P + G + + TGSGKTL Y+LP +
Sbjct: 112 FEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKTLAYLLPILSE 171
Query: 552 I 554
I
Sbjct: 172 I 172
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 44.8 bits (101), Expect = 4e-05
Identities = 21/61 (34%), Positives = 34/61 (55%)
Frame = +3
Query: 363 IQYFEEAXFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLDYILPA 542
++ F+E + V ++ + + PT IQ G P M K++ + TGSGKTL Y+LP
Sbjct: 111 VENFQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLPI 170
Query: 543 I 545
+
Sbjct: 171 V 171
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 44.4 bits (100), Expect = 6e-05
Identities = 19/62 (30%), Positives = 37/62 (59%)
Frame = +3
Query: 372 FEEAXFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLDYILPAIVH 551
FE+ + G+ G+++P+PIQ + PIA++G ++ A+ G+GKT + +P +
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEK 185
Query: 552 IN 557
I+
Sbjct: 186 ID 187
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 44.4 bits (100), Expect = 6e-05
Identities = 19/62 (30%), Positives = 37/62 (59%)
Frame = +3
Query: 372 FEEAXFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLDYILPAIVH 551
FE+ + G+ G+++P+PIQ + PIA++G ++ A+ G+GKT + +P +
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEK 185
Query: 552 IN 557
I+
Sbjct: 186 ID 187
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 44.4 bits (100), Expect = 6e-05
Identities = 19/62 (30%), Positives = 37/62 (59%)
Frame = +3
Query: 372 FEEAXFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLDYILPAIVH 551
FE+ + G+ G+++P+PIQ + PIA++G ++ A+ G+GKT + +P +
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLEK 215
Query: 552 IN 557
I+
Sbjct: 216 ID 217
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 44.0 bits (99), Expect = 8e-05
Identities = 27/85 (31%), Positives = 44/85 (51%)
Frame = +3
Query: 291 SPYEVEEYRNKHEVTVSGVEVHNPIQYFEEAXFPDYVQXGVKTMGYKEPTPIQAQGWPIA 470
S E ++ K ++ V VEV NP + ++ +K G + PIQA + +
Sbjct: 72 SSSEKKKSSKKVKLGVEDVEVDNP-NAVSKFRISAPLREKLKANGIEALFPIQASTFDMV 130
Query: 471 MSGKNLXGVAQTGSGKTLDYILPAI 545
+ G +L G A+TG GKTL ++LP +
Sbjct: 131 LDGADLVGRARTGQGKTLAFVLPIL 155
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 44.0 bits (99), Expect = 8e-05
Identities = 18/58 (31%), Positives = 34/58 (58%)
Frame = +3
Query: 372 FEEAXFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLDYILPAI 545
F++ G++ G+K T +Q P+ + GK++ A+TG+GKT+ ++LP+I
Sbjct: 82 FDQFPLSPLTLKGIEDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFLLPSI 139
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 43.2 bits (97), Expect = 1e-04
Identities = 18/45 (40%), Positives = 30/45 (66%)
Frame = +3
Query: 411 VKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLDYILPAI 545
+K GY+ T +Q PI + GK++ A+TG+GKT+ ++LP+I
Sbjct: 69 IKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSI 113
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 43.2 bits (97), Expect = 1e-04
Identities = 21/56 (37%), Positives = 33/56 (58%)
Frame = +3
Query: 390 PDYVQXGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLDYILPAIVHIN 557
P+++ ++ +G+ PT IQ + P +G++ AQTGSGKTL Y+L IN
Sbjct: 84 PEHILHRMEEIGFVFPTDIQREALPTLFTGRDCILHAQTGSGKTLTYLLLIFSLIN 139
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 42.7 bits (96), Expect = 2e-04
Identities = 18/45 (40%), Positives = 30/45 (66%)
Frame = +3
Query: 411 VKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLDYILPAI 545
+K G++ T +Q PI + GK++ A+TG+GKT+ ++LPAI
Sbjct: 397 IKDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAI 441
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/54 (37%), Positives = 32/54 (59%)
Frame = +3
Query: 360 PIQYFEEAXFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKT 521
PI+ F++ D V GV GYK+P+ IQ + + G+++ AQ+G+GKT
Sbjct: 20 PIKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKT 73
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 40.7 bits (91), Expect = 7e-04
Identities = 20/43 (46%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Frame = +3
Query: 420 MGYKEPTPIQAQGWPIAM-SGKNLXGVAQTGSGKTLDYILPAI 545
+ +KEPT IQ + +A GK++ G A+TGSGKTL + LP +
Sbjct: 208 LDFKEPTKIQKACFNVAAYQGKDVIGAAETGSGKTLAFGLPIL 250
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 40.7 bits (91), Expect = 7e-04
Identities = 20/51 (39%), Positives = 29/51 (56%)
Frame = +3
Query: 393 DYVQXGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLDYILPAI 545
D V ++ G+ P+ QA P +SGK++ A+TGSGKT Y+ P I
Sbjct: 89 DNVSIALRDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGKTHGYLAPII 139
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/50 (42%), Positives = 29/50 (58%)
Frame = +3
Query: 423 GYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLDYILPAIVHIN*PTGY 572
G++ TP+QA+ P S K++ A TGSGKTL ++LP I I Y
Sbjct: 35 GFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSY 84
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/50 (42%), Positives = 29/50 (58%)
Frame = +3
Query: 423 GYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLDYILPAIVHIN*PTGY 572
G++ TP+QA+ P S K++ A TGSGKTL ++LP I I Y
Sbjct: 36 GFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSY 85
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 38.7 bits (86), Expect = 0.003
Identities = 19/58 (32%), Positives = 29/58 (50%)
Frame = +3
Query: 372 FEEAXFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLDYILPAI 545
F E + + +K + P IQA + + GK+ Q+GSGKTL Y++P I
Sbjct: 376 FAEIGCSEDMMKALKEQNFDRPAHIQAMAFSPVIDGKSCIIADQSGSGKTLAYLVPVI 433
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 37.5 bits (83), Expect = 0.007
Identities = 20/63 (31%), Positives = 34/63 (53%)
Frame = +3
Query: 333 TVSGVEVHNPIQYFEEAXFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGS 512
T G+E PI F + + V GV G+++P+ IQ + + G+++ AQ+G+
Sbjct: 27 TTDGIE---PITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGT 83
Query: 513 GKT 521
GKT
Sbjct: 84 GKT 86
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 36.3 bits (80), Expect = 0.015
Identities = 20/52 (38%), Positives = 32/52 (61%)
Frame = +3
Query: 390 PDYVQXGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLDYILPAI 545
P+ V+ +K G ++ PIQ AM G+++ G A+TG+GKTL + +P I
Sbjct: 125 PEIVK-ALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPII 175
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 35.5 bits (78), Expect = 0.027
Identities = 16/36 (44%), Positives = 24/36 (66%)
Frame = +3
Query: 438 TPIQAQGWPIAMSGKNLXGVAQTGSGKTLDYILPAI 545
TP+QA P+ S K++ A TGSGKTL +++P +
Sbjct: 40 TPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLV 75
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 35.5 bits (78), Expect = 0.027
Identities = 19/52 (36%), Positives = 32/52 (61%)
Frame = +3
Query: 390 PDYVQXGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLDYILPAI 545
P+ V+ + + G ++ PIQ AM G+++ G A+TG+GKTL + +P I
Sbjct: 113 PEIVK-ALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPII 163
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 35.5 bits (78), Expect = 0.027
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +3
Query: 453 QGWPIAMSGKNLXGVAQTGSGKTLDYILPAI 545
Q P A++GK+L A TGSGKT +++P I
Sbjct: 2 QAIPAALTGKSLLASADTGSGKTASFLVPII 32
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 32.7 bits (71), Expect = 0.19
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Frame = +3
Query: 300 EVEEYRNKHEVTVSGVEVHNPIQYFEEAXFPDYVQXGVKT-MGYKEPTPIQAQGWPIAMS 476
E E N VT SG + FE+ + G+ M +++P+ IQA P+ M+
Sbjct: 70 EEPEDSNIKAVT-SGDTPYTSASRFEDLNLSPELMKGLYVEMKFEKPSKIQAISLPMIMT 128
Query: 477 --GKNLXGVAQTGSGKTLDYILPAIVHIN*PT 566
K+L A GSGKT ++L + ++ PT
Sbjct: 129 PPHKHLIAQAHNGSGKTTCFVLGMLSRVD-PT 159
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 32.7 bits (71), Expect = 0.19
Identities = 25/105 (23%), Positives = 47/105 (44%), Gaps = 6/105 (5%)
Frame = +3
Query: 249 NKNFYDPH---PTVLKRSPYEVEEYRNKHEVTVSGVEVHNPI---QYFEEAXFPDYVQXG 410
N+N D P + R ++ + ++ V E H+ I + F+E+
Sbjct: 330 NRNVTDEELYPPLDINRVREDLSKKQSVDNVMEEKQEPHDSIYSAKRFDESCISPLTLKA 389
Query: 411 VKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLDYILPAI 545
+ G + T +Q + GK+ A+TG+GK++ ++LPAI
Sbjct: 390 LSASGIVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAI 434
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 32.3 bits (70), Expect = 0.25
Identities = 17/60 (28%), Positives = 30/60 (50%)
Frame = +3
Query: 390 PDYVQXGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLDYILPAIVHIN*PTG 569
P ++ ++ G PIQ A+ G+++ A+TG+GKTL + +P I + G
Sbjct: 110 PQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEEAG 169
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 31.9 bits (69), Expect = 0.33
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = +3
Query: 372 FEEAXFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLDYILPAI 545
F+E+ + G + T +Q + GK+ A+TG+GK++ ++LPAI
Sbjct: 330 FDESCISPLTLKALSASGILKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAI 387
>At3g05740.1 68416.m00644 DNA helicase (RECQI1) identical to DNA
Helicase [Arabidopsis thaliana] GI:10944747
Length = 606
Score = 31.1 bits (67), Expect = 0.58
Identities = 23/74 (31%), Positives = 31/74 (41%)
Frame = +3
Query: 321 KHEVTVSGVEVHNPIQYFEEAXFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVA 500
K V +S + P Y E D + G K P+Q Q +M K+ +
Sbjct: 170 KPSVQISNKDHETP-SYEELQALDDLEFANLVIFGNKVFRPLQHQACRASMERKDCFVLM 228
Query: 501 QTGSGKTLDYILPA 542
TG GK+L Y LPA
Sbjct: 229 PTGGGKSLCYQLPA 242
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 31.1 bits (67), Expect = 0.58
Identities = 17/61 (27%), Positives = 32/61 (52%)
Frame = +3
Query: 348 EVHNPIQYFEEAXFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLD 527
EVH + F+ + + G+ G+++P+ IQ +G G ++ AQ+G+GKT
Sbjct: 36 EVH---ESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTAT 92
Query: 528 Y 530
+
Sbjct: 93 F 93
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 30.7 bits (66), Expect = 0.77
Identities = 19/75 (25%), Positives = 36/75 (48%)
Frame = +3
Query: 306 EEYRNKHEVTVSGVEVHNPIQYFEEAXFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSGKN 485
E + E S +VH + F+ + + G+ G+++P+ IQ +G G +
Sbjct: 22 EVLEGQDEFFTSYDDVH---ESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLD 78
Query: 486 LXGVAQTGSGKTLDY 530
+ AQ+G+GKT +
Sbjct: 79 VIQQAQSGTGKTATF 93
>At2g25460.1 68415.m03049 expressed protein
Length = 423
Score = 30.3 bits (65), Expect = 1.0
Identities = 10/39 (25%), Positives = 22/39 (56%)
Frame = -1
Query: 180 SHQSLQILQIYCHRCQTETNYRRICCLLQIWNHRFHGYY 64
+H S + + + + + E + R+CC++ WN F+ +Y
Sbjct: 63 NHTSSKPIALGSNHVEWEEEFERVCCIVGPWNLSFNVFY 101
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 30.3 bits (65), Expect = 1.0
Identities = 15/47 (31%), Positives = 28/47 (59%)
Frame = +3
Query: 390 PDYVQXGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLDY 530
PD ++ G+ G+++P+ IQ +G G ++ AQ+G+GKT +
Sbjct: 50 PDLLR-GIYAYGFEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATF 95
>At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical to
DNA Helicase [Arabidopsis thaliana] GI:11121449
Length = 1188
Score = 30.3 bits (65), Expect = 1.0
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +3
Query: 414 KTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLDYILPAIV 548
K G P Q + MSG ++ + TG GK+L Y LPA++
Sbjct: 447 KVFGNHSFRPNQREIINATMSGSDVFVLMPTGGGKSLTYQLPALI 491
>At2g03210.1 68415.m00274 xyloglucan fucosyltransferase, putative
(FUT2) identical to SP|O81053 Probable
fucosyltransferase 2 (EC 2.4.1.-) (AtFUT2) {Arabidopsis
thaliana}; similar to xyloglucan fucosyltransferase
GI:5231145 from [Arabidopsis thaliana]
Length = 539
Score = 29.9 bits (64), Expect = 1.3
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 473 VWKEFXWRSPNGFRENVGLHLASHCAHKLTNRL 571
+ K W +P R+ +G+H SH H+ T +L
Sbjct: 403 ILKTMYWENPTVTRDVIGIHQPSHEGHQQTEKL 435
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 29.5 bits (63), Expect = 1.8
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Frame = +3
Query: 399 VQXGVKTMGYKEPTPIQAQGW--PIAMSG--KNLXGVAQTGSGKTLDYILPAI 545
++ ++ MG P+Q W I G +++ + TGSGKTL Y LP +
Sbjct: 32 LKKALENMGISSLFPVQVAVWHETIGPGGFERDICVNSPTGSGKTLSYALPIV 84
>At5g08110.1 68418.m00946 DEAD/DEAH box helicase, putative several
putative ATP-dependent helicases
Length = 1058
Score = 29.1 bits (62), Expect = 2.4
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +3
Query: 411 VKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLDYILP 539
+K +G QA+ A++GKN+ T SGK+L Y +P
Sbjct: 386 LKRIGLNTLYSHQAEAISAALAGKNVAVATMTSSGKSLCYNVP 428
>At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 28.7 bits (61), Expect = 3.1
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +3
Query: 261 YDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEAXFPDYVQXGVKTMGYKEP 437
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 438 TPIQAQGWPIAMS 476
+P++ + P+ S
Sbjct: 232 SPVRDEYAPVIFS 244
>At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1080
Score = 28.7 bits (61), Expect = 3.1
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +3
Query: 261 YDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEAXFPDYVQXGVKTMGYKEP 437
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 195 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 254
Query: 438 TPIQAQGWPIAMS 476
+P++ + P+ S
Sbjct: 255 SPVRDEYAPVIFS 267
>At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 28.7 bits (61), Expect = 3.1
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +3
Query: 261 YDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEAXFPDYVQXGVKTMGYKEP 437
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 438 TPIQAQGWPIAMS 476
+P++ + P+ S
Sbjct: 232 SPVRDEYAPVIFS 244
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +3
Query: 252 KNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEAXFPDYVQ 404
K D H +L P+E + + KH+V + VE ++ E+ F + VQ
Sbjct: 161 KQIEDAHIAILT-CPFEPPKPKTKHKVDIDTVEKFETLRKQEQQYFDEMVQ 210
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +3
Query: 252 KNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEAXFPDYVQ 404
K D H +L P+E + + KH+V + VE ++ E+ F + VQ
Sbjct: 237 KQIEDAHIAILT-CPFEPPKPKTKHKVDIDTVEKFETLRKQEQQYFDEMVQ 286
>At5g52530.2 68418.m06518 dentin sialophosphoprotein-related
contains weak similarity to dentin sialophosphoprotein
precursor (Dentin matrix protein-3) (DMP- 3)
(Swiss-Prot:P97399) [Mus musculus]
Length = 828
Score = 27.5 bits (58), Expect = 7.2
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Frame = +3
Query: 207 MRRPDWDSVSLQPF--NKNFYDPHPTVLKRSPYEVEEYR--NKHEVTVSGVEVHNPIQYF 374
MRRP+ D+ +L+PF N+ F +P + + +E+ + R + E T G +V ++
Sbjct: 753 MRRPNSDNNNLRPFIPNRRFDNPEEST-GGNRFEMTQQRRTRRSETTEDGGDVIRRFKFN 811
Query: 375 EE 380
EE
Sbjct: 812 EE 813
>At5g52530.1 68418.m06517 dentin sialophosphoprotein-related
contains weak similarity to dentin sialophosphoprotein
precursor (Dentin matrix protein-3) (DMP- 3)
(Swiss-Prot:P97399) [Mus musculus]
Length = 828
Score = 27.5 bits (58), Expect = 7.2
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Frame = +3
Query: 207 MRRPDWDSVSLQPF--NKNFYDPHPTVLKRSPYEVEEYR--NKHEVTVSGVEVHNPIQYF 374
MRRP+ D+ +L+PF N+ F +P + + +E+ + R + E T G +V ++
Sbjct: 753 MRRPNSDNNNLRPFIPNRRFDNPEEST-GGNRFEMTQQRRTRRSETTEDGGDVIRRFKFN 811
Query: 375 EE 380
EE
Sbjct: 812 EE 813
>At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative
similar to SP|O94761 ATP-dependent DNA helicase Q4
(RecQ4) {Homo sapiens}; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 911
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +3
Query: 423 GYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLDYILPAIV 548
GY Q Q + + G + V TG+GK+L Y +PA++
Sbjct: 266 GYDSFRDGQLQAIKMILGGSSTMLVLPTGAGKSLCYQIPAMI 307
>At5g22960.1 68418.m02684 serine carboxypeptidase S10 family protein
similar to serine carboxypeptidase III [Precursor]
(SP:P37891) [Oryza sativa]
Length = 190
Score = 27.1 bits (57), Expect = 9.5
Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Frame = +3
Query: 213 RPDWDSVS--LQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHN 359
R D DSVS L F + F+ HP + K Y E H + VHN
Sbjct: 111 RHDEDSVSNDLYDFLQAFFKEHPNLAKDDFYITGESYAGHYIPALASRVHN 161
>At3g29450.1 68416.m03699 hypothetical protein
Length = 522
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +2
Query: 461 ADSYVWKEFX-WRSPNGFRENVGLHLASH 544
+D++V K F W++P RE+VGL + H
Sbjct: 49 SDTFVTKGFDTWKNPQSLREHVGLVNSFH 77
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,810,544
Number of Sequences: 28952
Number of extensions: 234888
Number of successful extensions: 693
Number of sequences better than 10.0: 76
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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