BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0909 (750 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 02_05_0367 - 28331479-28332358,28332432-28332988,28333454-283336... 30 2.3 10_08_0007 + 14044844-14045767 29 3.0 11_06_0542 + 24777453-24777632,24777654-24778478,24778576-247793... 29 3.9 03_06_0339 + 33246043-33247350 29 3.9 02_01_0679 - 5048653-5051394 29 5.2 10_08_0827 + 20849312-20849833,20850352-20850417,20850786-208510... 28 6.9 07_03_1552 - 27648193-27648307,27648384-27648431,27649140-276492... 28 6.9 09_04_0659 + 19282366-19282584,19282668-19282759,19282868-192829... 28 9.1 03_05_0654 + 26479416-26479605,26480058-26480246,26480674-264809... 28 9.1 >02_05_0367 - 28331479-28332358,28332432-28332988,28333454-28333671, 28333748-28333831,28334199-28334373,28334572-28334574 Length = 638 Score = 29.9 bits (64), Expect = 2.3 Identities = 13/30 (43%), Positives = 19/30 (63%) Frame = +2 Query: 116 LLRRMGCVS*KVPCGPRSGSEPDSFALRLH 205 L+R +GC + VPC P SG+E F + L+ Sbjct: 173 LIRPVGCGTEHVPCEPHSGAELGIFYIALY 202 >10_08_0007 + 14044844-14045767 Length = 307 Score = 29.5 bits (63), Expect = 3.0 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 3/59 (5%) Frame = +3 Query: 405 LKQANTGLKVLPSIGGWTLAD-PFFFFTDKTKR--DRFVASVKDFLQTWKFFDGVDIDW 572 +KQ+N ++V S+GG T+ D P FF + V S+ +Q DG+DID+ Sbjct: 96 IKQSNPNVRVAVSMGGATVNDRPVFFNITSVDSWVNNAVESLTGIIQD-NNLDGIDIDY 153 >11_06_0542 + 24777453-24777632,24777654-24778478,24778576-24779319, 24779422-24780354,24780456-24780938,24780969-24781082, 24781240-24781636,24781732-24782024,24782392-24782802 Length = 1459 Score = 29.1 bits (62), Expect = 3.9 Identities = 13/32 (40%), Positives = 16/32 (50%) Frame = -3 Query: 175 GTGTRSTGNFLGYTPHSTK*APTTFPEVCLKG 80 G GT S G+ YT H K P +CL+G Sbjct: 1004 GEGTPSNGDLPEYTSHCLKYRPKLLENLCLQG 1035 >03_06_0339 + 33246043-33247350 Length = 435 Score = 29.1 bits (62), Expect = 3.9 Identities = 16/40 (40%), Positives = 18/40 (45%) Frame = -2 Query: 599 LAPLPPGNSPINVDTIEELPSLEEVFHGGNETITLGFVGE 480 LA LPPG P V + PS F + TIT F E Sbjct: 136 LAYLPPGGRPAAVKRLHVPPSPSPSFPSASATITKSFCNE 175 >02_01_0679 - 5048653-5051394 Length = 913 Score = 28.7 bits (61), Expect = 5.2 Identities = 15/48 (31%), Positives = 22/48 (45%) Frame = -2 Query: 161 VHRELSRIHTPFDEVSAHHFSRSLLEGLIFLTNRIIERPQMATISVSY 18 + REL IH +V +S +LEG I ++ R + T SY Sbjct: 43 IERELDMIHHFLSQVGTKIYSNKVLEGWIVRVRKVAYRVEDITDEYSY 90 >10_08_0827 + 20849312-20849833,20850352-20850417,20850786-20851082, 20851215-20851412,20851748-20851849,20851960-20852100, 20852171-20852278,20852588-20852670,20852829-20852991, 20853636-20853650,20853968-20854093 Length = 606 Score = 28.3 bits (60), Expect = 6.9 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = +3 Query: 141 PRKFPVDRVPVPNLTHLLYGFIPICGG 221 P +F ++ PVPN T+ Y FIP GG Sbjct: 488 PERFDLEG-PVPNETNTEYRFIPFSGG 513 >07_03_1552 - 27648193-27648307,27648384-27648431,27649140-27649234, 27649311-27649376,27649721-27649810,27650210-27650437, 27650572-27650605,27651106-27651611 Length = 393 Score = 28.3 bits (60), Expect = 6.9 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%) Frame = +3 Query: 366 NEPYKGNFGQLMQL-KQANTGLKVLPSIGGWTLADPFFF 479 NE G +G+ MQ+ Q + G +L I W L PFF+ Sbjct: 240 NEKRAGLWGRCMQIIYQTSAGATMLTDITFWGLLVPFFY 278 >09_04_0659 + 19282366-19282584,19282668-19282759,19282868-19282958, 19283393-19283512,19283638-19283730,19283795-19283933, 19284060-19284141,19284229-19284361,19285024-19286010 Length = 651 Score = 27.9 bits (59), Expect = 9.1 Identities = 14/47 (29%), Positives = 24/47 (51%) Frame = -2 Query: 599 LAPLPPGNSPINVDTIEELPSLEEVFHGGNETITLGFVGEEEEGIGQ 459 LA PG I++LP+ + VFH G+ + GF+ + ++ Q Sbjct: 332 LAGFQPGAQVTTERLIKDLPNYDAVFHIGDLSYANGFLAQWDQFTAQ 378 >03_05_0654 + 26479416-26479605,26480058-26480246,26480674-26480989, 26481286-26481844 Length = 417 Score = 27.9 bits (59), Expect = 9.1 Identities = 14/39 (35%), Positives = 19/39 (48%) Frame = +3 Query: 285 SGREDFKVSIHDPWAALQKPQKGLSSWNEPYKGNFGQLM 401 S ED +VS H P A + SSW P G G+++ Sbjct: 350 SSPEDPRVSCHAPNMAQMQEDSISSSWEMPQGGPLGEIL 388 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 21,662,949 Number of Sequences: 37544 Number of extensions: 490838 Number of successful extensions: 1365 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 1321 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1365 length of database: 14,793,348 effective HSP length: 80 effective length of database: 11,789,828 effective search space used: 1992480932 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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