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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0909
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0367 - 28331479-28332358,28332432-28332988,28333454-283336...    30   2.3  
10_08_0007 + 14044844-14045767                                         29   3.0  
11_06_0542 + 24777453-24777632,24777654-24778478,24778576-247793...    29   3.9  
03_06_0339 + 33246043-33247350                                         29   3.9  
02_01_0679 - 5048653-5051394                                           29   5.2  
10_08_0827 + 20849312-20849833,20850352-20850417,20850786-208510...    28   6.9  
07_03_1552 - 27648193-27648307,27648384-27648431,27649140-276492...    28   6.9  
09_04_0659 + 19282366-19282584,19282668-19282759,19282868-192829...    28   9.1  
03_05_0654 + 26479416-26479605,26480058-26480246,26480674-264809...    28   9.1  

>02_05_0367 -
           28331479-28332358,28332432-28332988,28333454-28333671,
           28333748-28333831,28334199-28334373,28334572-28334574
          Length = 638

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +2

Query: 116 LLRRMGCVS*KVPCGPRSGSEPDSFALRLH 205
           L+R +GC +  VPC P SG+E   F + L+
Sbjct: 173 LIRPVGCGTEHVPCEPHSGAELGIFYIALY 202


>10_08_0007 + 14044844-14045767
          Length = 307

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
 Frame = +3

Query: 405 LKQANTGLKVLPSIGGWTLAD-PFFFFTDKTKR--DRFVASVKDFLQTWKFFDGVDIDW 572
           +KQ+N  ++V  S+GG T+ D P FF         +  V S+   +Q     DG+DID+
Sbjct: 96  IKQSNPNVRVAVSMGGATVNDRPVFFNITSVDSWVNNAVESLTGIIQD-NNLDGIDIDY 153


>11_06_0542 + 24777453-24777632,24777654-24778478,24778576-24779319,
            24779422-24780354,24780456-24780938,24780969-24781082,
            24781240-24781636,24781732-24782024,24782392-24782802
          Length = 1459

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -3

Query: 175  GTGTRSTGNFLGYTPHSTK*APTTFPEVCLKG 80
            G GT S G+   YT H  K  P     +CL+G
Sbjct: 1004 GEGTPSNGDLPEYTSHCLKYRPKLLENLCLQG 1035


>03_06_0339 + 33246043-33247350
          Length = 435

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 16/40 (40%), Positives = 18/40 (45%)
 Frame = -2

Query: 599 LAPLPPGNSPINVDTIEELPSLEEVFHGGNETITLGFVGE 480
           LA LPPG  P  V  +   PS    F   + TIT  F  E
Sbjct: 136 LAYLPPGGRPAAVKRLHVPPSPSPSFPSASATITKSFCNE 175


>02_01_0679 - 5048653-5051394
          Length = 913

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = -2

Query: 161 VHRELSRIHTPFDEVSAHHFSRSLLEGLIFLTNRIIERPQMATISVSY 18
           + REL  IH    +V    +S  +LEG I    ++  R +  T   SY
Sbjct: 43  IERELDMIHHFLSQVGTKIYSNKVLEGWIVRVRKVAYRVEDITDEYSY 90


>10_08_0827 +
           20849312-20849833,20850352-20850417,20850786-20851082,
           20851215-20851412,20851748-20851849,20851960-20852100,
           20852171-20852278,20852588-20852670,20852829-20852991,
           20853636-20853650,20853968-20854093
          Length = 606

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 141 PRKFPVDRVPVPNLTHLLYGFIPICGG 221
           P +F ++  PVPN T+  Y FIP  GG
Sbjct: 488 PERFDLEG-PVPNETNTEYRFIPFSGG 513


>07_03_1552 -
           27648193-27648307,27648384-27648431,27649140-27649234,
           27649311-27649376,27649721-27649810,27650210-27650437,
           27650572-27650605,27651106-27651611
          Length = 393

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +3

Query: 366 NEPYKGNFGQLMQL-KQANTGLKVLPSIGGWTLADPFFF 479
           NE   G +G+ MQ+  Q + G  +L  I  W L  PFF+
Sbjct: 240 NEKRAGLWGRCMQIIYQTSAGATMLTDITFWGLLVPFFY 278


>09_04_0659 +
           19282366-19282584,19282668-19282759,19282868-19282958,
           19283393-19283512,19283638-19283730,19283795-19283933,
           19284060-19284141,19284229-19284361,19285024-19286010
          Length = 651

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = -2

Query: 599 LAPLPPGNSPINVDTIEELPSLEEVFHGGNETITLGFVGEEEEGIGQ 459
           LA   PG        I++LP+ + VFH G+ +   GF+ + ++   Q
Sbjct: 332 LAGFQPGAQVTTERLIKDLPNYDAVFHIGDLSYANGFLAQWDQFTAQ 378


>03_05_0654 +
           26479416-26479605,26480058-26480246,26480674-26480989,
           26481286-26481844
          Length = 417

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +3

Query: 285 SGREDFKVSIHDPWAALQKPQKGLSSWNEPYKGNFGQLM 401
           S  ED +VS H P  A  +     SSW  P  G  G+++
Sbjct: 350 SSPEDPRVSCHAPNMAQMQEDSISSSWEMPQGGPLGEIL 388


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,662,949
Number of Sequences: 37544
Number of extensions: 490838
Number of successful extensions: 1365
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1365
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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