Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0909
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0367 - 28331479-28332358,28332432-28332988,28333454-283336... 30 2.3
10_08_0007 + 14044844-14045767 29 3.0
11_06_0542 + 24777453-24777632,24777654-24778478,24778576-247793... 29 3.9
03_06_0339 + 33246043-33247350 29 3.9
02_01_0679 - 5048653-5051394 29 5.2
10_08_0827 + 20849312-20849833,20850352-20850417,20850786-208510... 28 6.9
07_03_1552 - 27648193-27648307,27648384-27648431,27649140-276492... 28 6.9
09_04_0659 + 19282366-19282584,19282668-19282759,19282868-192829... 28 9.1
03_05_0654 + 26479416-26479605,26480058-26480246,26480674-264809... 28 9.1
>02_05_0367 -
28331479-28332358,28332432-28332988,28333454-28333671,
28333748-28333831,28334199-28334373,28334572-28334574
Length = 638
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 116 LLRRMGCVS*KVPCGPRSGSEPDSFALRLH 205
L+R +GC + VPC P SG+E F + L+
Sbjct: 173 LIRPVGCGTEHVPCEPHSGAELGIFYIALY 202
>10_08_0007 + 14044844-14045767
Length = 307
Score = 29.5 bits (63), Expect = 3.0
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Frame = +3
Query: 405 LKQANTGLKVLPSIGGWTLAD-PFFFFTDKTKR--DRFVASVKDFLQTWKFFDGVDIDW 572
+KQ+N ++V S+GG T+ D P FF + V S+ +Q DG+DID+
Sbjct: 96 IKQSNPNVRVAVSMGGATVNDRPVFFNITSVDSWVNNAVESLTGIIQD-NNLDGIDIDY 153
>11_06_0542 + 24777453-24777632,24777654-24778478,24778576-24779319,
24779422-24780354,24780456-24780938,24780969-24781082,
24781240-24781636,24781732-24782024,24782392-24782802
Length = 1459
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -3
Query: 175 GTGTRSTGNFLGYTPHSTK*APTTFPEVCLKG 80
G GT S G+ YT H K P +CL+G
Sbjct: 1004 GEGTPSNGDLPEYTSHCLKYRPKLLENLCLQG 1035
>03_06_0339 + 33246043-33247350
Length = 435
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/40 (40%), Positives = 18/40 (45%)
Frame = -2
Query: 599 LAPLPPGNSPINVDTIEELPSLEEVFHGGNETITLGFVGE 480
LA LPPG P V + PS F + TIT F E
Sbjct: 136 LAYLPPGGRPAAVKRLHVPPSPSPSFPSASATITKSFCNE 175
>02_01_0679 - 5048653-5051394
Length = 913
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = -2
Query: 161 VHRELSRIHTPFDEVSAHHFSRSLLEGLIFLTNRIIERPQMATISVSY 18
+ REL IH +V +S +LEG I ++ R + T SY
Sbjct: 43 IERELDMIHHFLSQVGTKIYSNKVLEGWIVRVRKVAYRVEDITDEYSY 90
>10_08_0827 +
20849312-20849833,20850352-20850417,20850786-20851082,
20851215-20851412,20851748-20851849,20851960-20852100,
20852171-20852278,20852588-20852670,20852829-20852991,
20853636-20853650,20853968-20854093
Length = 606
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +3
Query: 141 PRKFPVDRVPVPNLTHLLYGFIPICGG 221
P +F ++ PVPN T+ Y FIP GG
Sbjct: 488 PERFDLEG-PVPNETNTEYRFIPFSGG 513
>07_03_1552 -
27648193-27648307,27648384-27648431,27649140-27649234,
27649311-27649376,27649721-27649810,27650210-27650437,
27650572-27650605,27651106-27651611
Length = 393
Score = 28.3 bits (60), Expect = 6.9
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3
Query: 366 NEPYKGNFGQLMQL-KQANTGLKVLPSIGGWTLADPFFF 479
NE G +G+ MQ+ Q + G +L I W L PFF+
Sbjct: 240 NEKRAGLWGRCMQIIYQTSAGATMLTDITFWGLLVPFFY 278
>09_04_0659 +
19282366-19282584,19282668-19282759,19282868-19282958,
19283393-19283512,19283638-19283730,19283795-19283933,
19284060-19284141,19284229-19284361,19285024-19286010
Length = 651
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = -2
Query: 599 LAPLPPGNSPINVDTIEELPSLEEVFHGGNETITLGFVGEEEEGIGQ 459
LA PG I++LP+ + VFH G+ + GF+ + ++ Q
Sbjct: 332 LAGFQPGAQVTTERLIKDLPNYDAVFHIGDLSYANGFLAQWDQFTAQ 378
>03_05_0654 +
26479416-26479605,26480058-26480246,26480674-26480989,
26481286-26481844
Length = 417
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +3
Query: 285 SGREDFKVSIHDPWAALQKPQKGLSSWNEPYKGNFGQLM 401
S ED +VS H P A + SSW P G G+++
Sbjct: 350 SSPEDPRVSCHAPNMAQMQEDSISSSWEMPQGGPLGEIL 388
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,662,949
Number of Sequences: 37544
Number of extensions: 490838
Number of successful extensions: 1365
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1365
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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