Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0909
         (750 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55143| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)              47   1e-05
SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)              41   0.001
SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)              40   0.002
SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.002
SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.035
SB_24154| Best HMM Match : Glyco_hydro_18 (HMM E-Value=2.2e-32)        36   0.046
SB_25790| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.00 
SB_20689| Best HMM Match : Gelsolin (HMM E-Value=0.00029)              29   5.3  
SB_5758| Best HMM Match : fn3 (HMM E-Value=6.6e-18)                    28   7.0  

>SB_55143| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
          Length = 270

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
 Frame = +3

Query: 336 QKPQKGLSSWNEPYKGNFGQLMQLKQANTGLKVLPSIGGWTLADPFFFFTDKTK----RD 503
           QK +  +  WN+     + +   LKQ N  LK L ++GGW   +    F+   K    R 
Sbjct: 60  QKNELAMYEWNDDKL--YPRFNALKQKNPELKTLLAVGGWNHENANSPFSRMVKTAATRK 117

Query: 504 RFVASVKDFLQTWKFFDGVDIDWGVP 581
            F+ SV   L+TW  FDG+D+DW  P
Sbjct: 118 VFIDSVIRILRTWG-FDGLDLDWEYP 142


>SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
          Length = 829

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
 Frame = +3

Query: 387 FGQLMQLKQANTGLKVLPSIGGWTLAD---PFF-FFTDKTKRDRFVASVKDFLQTWKFFD 554
           + ++  LK+ N  LK   ++GGWT  +   PF      K KR  F+ S  + L+T   FD
Sbjct: 463 YKRINALKKINPKLKTQIAVGGWTHEEKNSPFSKMVATKEKRAIFIKSAIETLRT-NGFD 521

Query: 555 GVDIDWGVP 581
           G+D+DW  P
Sbjct: 522 GLDLDWEYP 530



 Score = 40.7 bits (91), Expect = 0.001
 Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
 Frame = +3

Query: 387 FGQLMQLKQANTGLKVLPSIGGWTLAD---PFF-FFTDKTKRDRFVASVKDFLQTWKFFD 554
           + ++  LK+ N  LK   ++GGWT  +   PF      K KR  F+ S  + L+T   FD
Sbjct: 78  YQRINALKKINPKLKTQIAVGGWTHEEKNSPFSKMVATKEKRAIFIKSAIETLRT-HGFD 136

Query: 555 GVDIDWGVP 581
           G+D+DW  P
Sbjct: 137 GLDLDWEYP 145


>SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
          Length = 569

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 26/77 (33%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
 Frame = +3

Query: 363 WNEPYKGNFGQLMQLKQANTGLKVLPSIGGW---TLADPFF-FFTDKTKRDRFVASVKDF 530
           WN+     + +   LK  N GLK L ++GGW       PF         R  F+ S    
Sbjct: 181 WNDDKL--YKEFNDLKLKNPGLKTLLAVGGWNHENYKSPFSRMVRTAASRKVFIDSSIAM 238

Query: 531 LQTWKFFDGVDIDWGVP 581
           L+ W  FDG D+DW  P
Sbjct: 239 LRQWN-FDGFDLDWEYP 254


>SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 807

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
 Frame = +3

Query: 351 GLSSWNEPYKGNFGQLMQLKQANTGLKVLPSIGGWTL----ADPFF-FFTDKTKRDRFVA 515
           G   WN+     + ++  LK  N  LK L ++GGW        PF      K+ R  F++
Sbjct: 445 GTYEWNDDRL--YKEINDLKLKNPSLKTLLAVGGWNHESGPVSPFSQMVASKSNRTTFIS 502

Query: 516 SVKDFLQTWKFFDGVDIDWGVP 581
           S+      + F DG D+DW  P
Sbjct: 503 SLLQLSDKYDF-DGFDLDWEYP 523


>SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 438

 Score = 35.9 bits (79), Expect = 0.035
 Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
 Frame = +3

Query: 363 WNEPYKGNFGQLMQLKQANTGLKVLPSIGGWTLAD-PFF-FFTDKTKRDRFVASVKDFLQ 536
           WN+     + ++  LK +++ +K L ++GGW +   PF    +  ++R  F+     FL+
Sbjct: 72  WNDA--AMYKKVNDLK-SSSNMKTLLAVGGWNMGSGPFQDMVSTASRRKIFIDDAILFLR 128

Query: 537 TWKFFDGVDIDWGVP 581
               FDG+D+DW  P
Sbjct: 129 N-HMFDGLDLDWEYP 142


>SB_24154| Best HMM Match : Glyco_hydro_18 (HMM E-Value=2.2e-32)
          Length = 561

 Score = 35.5 bits (78), Expect = 0.046
 Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
 Frame = +3

Query: 411 QANTGLKVLPSIGGWTLAD-PFF-FFTDKTKRDRFVASVKDFLQTWKFFDGVDIDWGVP 581
           ++++ +K L ++GGW +   PF    +  ++R  F+     FL+    FDG+D+DW  P
Sbjct: 9   KSSSNMKTLLAVGGWNMGSGPFQDMVSTASRRKIFIDDAILFLRN-HMFDGLDLDWEYP 66


>SB_25790| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 122

 Score = 31.1 bits (67), Expect = 1.00
 Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = -2

Query: 164 AVHRELSRIHTPFDEVSAHHFSRSLLEGLIFL-TNRIIER 48
           ++H  + + H   +E     +SR +LEG+++L TNRI+ R
Sbjct: 2   SIHEHIKQ-HGALNESLTRKYSRQILEGILYLHTNRIVHR 40


>SB_20689| Best HMM Match : Gelsolin (HMM E-Value=0.00029)
          Length = 1866

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 15/60 (25%), Positives = 24/60 (40%)
 Frame = +3

Query: 210 ICGGDGINDSLKEIEGSFQALQRSCSGREDFKVSIHDPWAALQKPQKGLSSWNEPYKGNF 389
           ICGG    D +K+ E    +L R  S  E  ++  H  W++         +  +    NF
Sbjct: 767 ICGGPLSPDEMKKFEDITFSLARKTSSEEMARLPAHKRWSSSSTETSSAKNTEDEVGANF 826


>SB_5758| Best HMM Match : fn3 (HMM E-Value=6.6e-18)
          Length = 1191

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
 Frame = -1

Query: 456  SSHQLKVRPLSQYSLVSTASAARSYLCR------ARSRTIIPFEVSAGPPRDRG*KP*SL 295
            +++++ VRPL+   L ST  +  +  CR      A    + P+ V  G P   G  P  L
Sbjct: 989  TTYRVLVRPLTSTGLGSTLDSTLAETCRCPKFMTAAWSPVPPYTVDTGQPVPSGIIPEIL 1048

Query: 294  HGRCMNVVVLENCPQF 247
                M V++ E C +F
Sbjct: 1049 SN--MLVLICETCKEF 1062


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,738,276
Number of Sequences: 59808
Number of extensions: 508118
Number of successful extensions: 1305
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1298
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)