Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0909
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42835-2|AAA83586.1|  617|Caenorhabditis elegans Chitinase prote...    51   1e-06
AF016419-9|AAG24054.1| 2025|Caenorhabditis elegans Hypothetical ...    48   5e-06
U70858-7|AAB09177.1| 1484|Caenorhabditis elegans Hypothetical pr...    46   3e-05
Z54342-5|CAA91147.1|  457|Caenorhabditis elegans Hypothetical pr...    45   7e-05
AF026152-1|AAB81847.1|  117|Caenorhabditis elegans chitinase pro...    41   0.001
Z66524-7|CAA91419.2|  626|Caenorhabditis elegans Hypothetical pr...    39   0.004
Z54342-9|CAA91153.1|  399|Caenorhabditis elegans Hypothetical pr...    38   0.006
Z70035-1|CAA93861.1|  432|Caenorhabditis elegans Hypothetical pr...    35   0.054
Z54342-3|CAA91154.1|  394|Caenorhabditis elegans Hypothetical pr...    33   0.16 
Z70035-4|CAA93864.2|  410|Caenorhabditis elegans Hypothetical pr...    32   0.50 
AC084153-14|AAK84588.1|  264|Caenorhabditis elegans Hypothetical...    30   2.0  
U61950-3|AAC24288.1|  469|Caenorhabditis elegans Hypothetical pr...    29   4.7  
U23168-4|AAU87833.1| 1379|Caenorhabditis elegans Temporarily ass...    28   8.1  
U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily ass...    28   8.1  
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass...    28   8.1  

>U42835-2|AAA83586.1|  617|Caenorhabditis elegans Chitinase protein
           1 protein.
          Length = 617

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
 Frame = +3

Query: 378 KGNFGQLMQLKQANTGLKVLPSIGGWTLADPFF--FFTDKTKRDRFVASVKDFLQTWKFF 551
           +G + ++ +LK  +T LK L S GGW+     F         R  F+ S   F++TW  F
Sbjct: 113 EGMYRRVNKLKVTDTQLKTLLSFGGWSFGTALFQGMAASSASRKVFIDSAITFVRTWG-F 171

Query: 552 DGVDIDWGVP 581
           DG+DIDW  P
Sbjct: 172 DGIDIDWEYP 181


>AF016419-9|AAG24054.1| 2025|Caenorhabditis elegans Hypothetical
            protein F07G11.9 protein.
          Length = 2025

 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
 Frame = +3

Query: 408  KQANTGLKVLPSIGGWTLADPF-FFFTDKTKRDRFVASVKDFLQTWKFFDGVDIDWGVP 581
            + AN+G++VL ++GGW  +  F     D  KR +FV S+  F++  K  DGVD+DW  P
Sbjct: 1561 RAANSGVRVLFAVGGWDNSQYFSSVAADSGKRKKFVDSIASFVEDQK-IDGVDLDWEYP 1618


>U70858-7|AAB09177.1| 1484|Caenorhabditis elegans Hypothetical protein
            T01C4.1 protein.
          Length = 1484

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
 Frame = +3

Query: 408  KQANTGLKVLPSIGGWTLADPF-FFFTDKTKRDRFVASVKDFLQTWKFFDGVDIDWGVP 581
            +  N+G++VL ++GGW  +  F     D  KR  FV SV  F++  K  DGVD+DW  P
Sbjct: 1024 RAVNSGVRVLFAVGGWDNSQYFSSVAADSGKRRNFVDSVASFIEHHK-IDGVDLDWEYP 1081


>Z54342-5|CAA91147.1|  457|Caenorhabditis elegans Hypothetical
           protein C08H9.10 protein.
          Length = 457

 Score = 44.8 bits (101), Expect = 7e-05
 Identities = 30/118 (25%), Positives = 60/118 (50%), Gaps = 2/118 (1%)
 Frame = +3

Query: 243 KEIEGSFQALQRSCSGREDFKVSIHDPWAALQKPQKGLSSWNEPYKGNFGQLM-QLKQAN 419
           K I G F   + +   R+  ++  H  +         ++   E  +  F ++  + ++AN
Sbjct: 110 KRIVGYFAEFENTALTRKQLQMLTHIIYLFAIPKNGNMTFGGERSRRKFEEMKNEARKAN 169

Query: 420 TGLKVLPSIGGWTLADPFF-FFTDKTKRDRFVASVKDFLQTWKFFDGVDIDWGVPRWQ 590
           + LKV+ SIGG + +  F    +++T R+ FV S+  F+Q +   DG++I W  P+++
Sbjct: 170 STLKVMISIGGQSNSRSFSRLVSNETSRNVFVNSIVSFVQKYD-IDGIEIFWTWPKYE 226


>AF026152-1|AAB81847.1|  117|Caenorhabditis elegans chitinase
           protein.
          Length = 117

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
 Frame = +3

Query: 378 KGNFGQLMQLKQANTGLKVLPSIGGWTLADPFF--FFTDKTKRDRFVASVKDFLQTWKFF 551
           +G + ++ +LK  +T LK L S GG +     F         R  F+ S    ++TW F 
Sbjct: 52  EGMYRRVNKLKVTDTQLKTLLSFGGCSFGTALFQGMAASSASRKVFIDSATTSVRTWGF- 110

Query: 552 DGVDIDW 572
           DG+D+DW
Sbjct: 111 DGIDLDW 117


>Z66524-7|CAA91419.2|  626|Caenorhabditis elegans Hypothetical
           protein T13H5.3 protein.
          Length = 626

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
 Frame = +3

Query: 378 KGNFGQLMQLKQANTGLKVLPSIGGWTLADPFFFFT-DKTKRDRFVASVKDFLQTWKFFD 554
           K     + ++   +  LK+L ++GGW  +  F   T D ++R   +++    ++ + F D
Sbjct: 78  KARLEHVKEVASRHPDLKLLYAVGGWENSQYFSVLTADHSRRSILISNFVKVIKEYGF-D 136

Query: 555 GVDIDWGVP 581
           GVDIDW  P
Sbjct: 137 GVDIDWEYP 145


>Z54342-9|CAA91153.1|  399|Caenorhabditis elegans Hypothetical
           protein C08H9.14 protein.
          Length = 399

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 23/67 (34%), Positives = 35/67 (52%)
 Frame = +3

Query: 381 GNFGQLMQLKQANTGLKVLPSIGGWTLADPFFFFTDKTKRDRFVASVKDFLQTWKFFDGV 560
           G F    +  + N GLKV+ SIGG+  + P F      K+ + +AS+   ++ +   DGV
Sbjct: 95  GFFDMKRKSMELNRGLKVMVSIGGYE-SSPLFSDVLVKKKKKLIASIALLVKKFD-LDGV 152

Query: 561 DIDWGVP 581
           DI W  P
Sbjct: 153 DIFWNWP 159


>Z70035-1|CAA93861.1|  432|Caenorhabditis elegans Hypothetical
           protein R09D1.1 protein.
          Length = 432

 Score = 35.1 bits (77), Expect = 0.054
 Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = +3

Query: 396 LMQLKQANTGLKVLPSIGGWTLADPF-FFFTDKTKRDRFVASVKDFLQTWKFFDGVDIDW 572
           +++    ++ LKV+ SIGG  +   F    +D+ KR   + S+  FL T    DGVDI W
Sbjct: 126 ILKTNAESSTLKVMISIGGMDINSDFSLVISDEKKRRSLIESIVSFL-TEHQIDGVDIFW 184


>Z54342-3|CAA91154.1|  394|Caenorhabditis elegans Hypothetical
           protein C08H9.6 protein.
          Length = 394

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 20/58 (34%), Positives = 28/58 (48%)
 Frame = +3

Query: 408 KQANTGLKVLPSIGGWTLADPFFFFTDKTKRDRFVASVKDFLQTWKFFDGVDIDWGVP 581
           K  N  LK++  I G      F    +  K++ F+ S+  F+   KF DGVDI W  P
Sbjct: 102 KMDNPNLKIMVEINGKF----FSVLAEDEKKNSFIKSISSFVVDHKF-DGVDIFWSWP 154


>Z70035-4|CAA93864.2|  410|Caenorhabditis elegans Hypothetical
           protein R09D1.4 protein.
          Length = 410

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +3

Query: 414 ANTGLKVLPSIGGWTLADPF-FFFTDKTKRDRFVASVKDFLQTWKFFDGVDIDW 572
           +N+G+K++ SIGG   +  F    +D T    F+ S+  F+ T    DG+DI W
Sbjct: 151 SNSGVKIMISIGGDENSQYFSSVLSDITMCKLFIESIIAFIHT-NSIDGMDIHW 203


>AC084153-14|AAK84588.1|  264|Caenorhabditis elegans Hypothetical
           protein Y22D7AL.14 protein.
          Length = 264

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +3

Query: 507 FVASVKDFLQTWKFFDGVDIDWGVPRWQR 593
           F ++V   LQ ++  +GVDIDW  P W R
Sbjct: 4   FSSTVTQVLQKYRL-NGVDIDWEFPVWSR 31


>U61950-3|AAC24288.1|  469|Caenorhabditis elegans Hypothetical
           protein C45E5.2 protein.
          Length = 469

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +3

Query: 366 NEPYKGNFGQLMQL-KQANTGLKVLPSIGGWTLADPFFFFTDKTKRDRF 509
           N+  KG F  L +L K  N  +K++ SIGGW  +  F       K  RF
Sbjct: 415 NDRGKGRFKNLNRLIKYENLNVKMMFSIGGWADSTNFRSVVADVKIKRF 463


>U23168-4|AAU87833.1| 1379|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform d protein.
          Length = 1379

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -2

Query: 212  NRNEAVEQMSQVRNRNAVHRELSR-IHTPFDEVSAHHFSRS 93
            NR+E  E  S+ +  N++H E S   H+ ++  S H+   S
Sbjct: 1301 NRSELREMRSEEKRSNSMHHEESHYAHSSYEHTSEHYSQSS 1341


>U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform b protein.
          Length = 4034

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -2

Query: 212  NRNEAVEQMSQVRNRNAVHRELSR-IHTPFDEVSAHHFSRS 93
            NR+E  E  S+ +  N++H E S   H+ ++  S H+   S
Sbjct: 1301 NRSELREMRSEEKRSNSMHHEESHYAHSSYEHTSEHYSQSS 1341


>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform c protein.
          Length = 7548

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -2

Query: 212  NRNEAVEQMSQVRNRNAVHRELSR-IHTPFDEVSAHHFSRS 93
            NR+E  E  S+ +  N++H E S   H+ ++  S H+   S
Sbjct: 1301 NRSELREMRSEEKRSNSMHHEESHYAHSSYEHTSEHYSQSS 1341


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,620,805
Number of Sequences: 27780
Number of extensions: 390928
Number of successful extensions: 1135
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1132
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)