Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0909
         (750 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g19810.1 68417.m02905 glycosyl hydrolase family 18 protein si...    34   0.088
At4g19800.1 68417.m02904 glycosyl hydrolase family 18 protein si...    33   0.27 
At5g07790.1 68418.m00892 expressed protein                             30   1.9  
At3g28980.1 68416.m03622 expressed protein                             29   2.5  
At5g17310.2 68418.m02028 UTP--glucose-1-phosphate uridylyltransf...    28   7.6  
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila...    28   7.6  

>At4g19810.1 68417.m02905 glycosyl hydrolase family 18 protein
           similar to chitinase/lysozyme GI:467689 from [Nicotiana
           tabacum]
          Length = 379

 Score = 34.3 bits (75), Expect = 0.088
 Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
 Frame = +3

Query: 336 QKPQKGLSSWNEPYKGNFGQLMQLKQANTGLKVLPSIGGWTLADPFFFFT---DKTKRDR 506
           Q  Q  +SS N+P    F Q +Q +  N  +K L SIGG  +AD   + +   + T R  
Sbjct: 62  QTNQVTVSSANQPKFSTFTQTVQRR--NPSVKTLLSIGGG-IADKTAYASMASNPTSRKS 118

Query: 507 FVASVKDFLQTWKFFDGVDIDWGVP 581
           F+ S     +++ F  G+D+DW  P
Sbjct: 119 FIDSSIRVARSYGFH-GLDLDWEYP 142


>At4g19800.1 68417.m02904 glycosyl hydrolase family 18 protein
           similar to chitinase, class V GI:899342 from [Nicotiana
           tabacum]
          Length = 398

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
 Frame = +3

Query: 354 LSSWNEPYKGNFGQLMQLKQANTGLKVLPSIGGWTLADPFF--FFTDKTKRDRFVASVKD 527
           +++WN+     F + +Q  Q N  +K L SIGG       F    ++   R  F+ S   
Sbjct: 47  IATWNQAPFHAFTETVQ--QRNPHVKTLLSIGGGNADKDAFASMASNPDSRASFIQSTIT 104

Query: 528 FLQTWKFFDGVDIDWGVPR 584
             +++ F  G+D+DW  PR
Sbjct: 105 VARSYGFH-GLDLDWEYPR 122


>At5g07790.1 68418.m00892 expressed protein
          Length = 616

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +3

Query: 276 RSCSGREDFKVSIHDPWAALQKPQKGLSSWNEPYKGNFGQLMQLKQANTG 425
           + C   + FK S HDP ++ Q   +  S+     KG+   L + K A  G
Sbjct: 336 KHCPSNKTFKGSDHDPHSSGQASSESQSNQTSMEKGSSSSLSEAKSAKKG 385


>At3g28980.1 68416.m03622 expressed protein 
          Length = 445

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
 Frame = +3

Query: 234 DSLKEIEGSFQALQRSCSGREDFKV---SIHDPWAALQKPQKGLSSWNEPYKGNFGQLMQ 404
           ++ K++      L++ C  +E+FKV    +     A +K +KGL S  +   G     MQ
Sbjct: 284 ETSKDVSTFIMNLEKKCPQKEEFKVFFEQLKGTMIAPRKERKGLFSRIKTAAGKISGAMQ 343

Query: 405 LKQANTGLK 431
           + ++  G K
Sbjct: 344 VMRSRIGSK 352


>At5g17310.2 68418.m02028 UTP--glucose-1-phosphate
           uridylyltransferase, putative / UDP-glucose
           pyrophosphorylase, putative / UGPase, putative strong
           similarity to SP|P19595 UTP--glucose-1-phosphate
           uridylyltransferase (EC 2.7.7.9) (UDP-glucose
           pyrophosphorylase) (UDPGP) (UGPase) {Solanum tuberosum};
           contains Pfam profile PF01704: UTP--glucose-1-phosphate
           uridylyltransferase
          Length = 470

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = -2

Query: 242 QTVIDAITTTNRNEA---VEQMSQVRNRNAVHRELSRIHTPFDEV 117
           ++ +D +T  + NE    +  +S+  +  A H E S+I TP DE+
Sbjct: 13  KSAVDGLTEMSENEKSGFINLVSRYLSGEAQHIEWSKIQTPTDEI 57


>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
           to RNA helicase involved in rRNA processing GB:6321267
           from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
           box domain
          Length = 541

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = -3

Query: 577 TPQSMSTPSKNFQVWRKSFTEATKRSRLVLSVKKKKGSANVQPPIEG 437
           T    S    NF V  +  TE  +  ++++S KK+K  ++   P+EG
Sbjct: 30  TEDDDSNKKVNFFVEEEEDTEQPEAEKVIVSSKKRKRRSSNSVPVEG 76


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,033,192
Number of Sequences: 28952
Number of extensions: 383553
Number of successful extensions: 1110
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1110
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)