Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0908
(750 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy... 30 0.31
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa... 29 0.71
SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ... 29 0.94
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c... 28 1.6
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch... 28 1.6
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 27 2.9
SPAC23H4.10c |thi4||thiamine-phosphate dipyrophosphorylase/hydro... 26 5.0
SPCC1753.02c |git3||G-protein coupled receptor Git3|Schizosaccha... 26 6.6
SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces pomb... 25 8.7
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy... 25 8.7
>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 794
Score = 30.3 bits (65), Expect = 0.31
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 114 SGRSHSFHTHHYVSNHSDHFHHIHRGS 194
+G H H HHY++ H +H H GS
Sbjct: 739 NGGHHHHHHHHYITGHVYGGYHKHSGS 765
>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1029
Score = 29.1 bits (62), Expect = 0.71
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +3
Query: 12 CRCLIHQLYPTTGESVPSRIKIHQAIDHFSDSPPSGRSHSFHTH-HYVSNH 161
C ++ LY +GESV SRI++ +D D + S ++++H V+ H
Sbjct: 333 CSYILDALYVFSGESVNSRIQVVSDVDDDEDD-ENAFSQNYYSHLQMVAKH 382
>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 581
Score = 28.7 bits (61), Expect = 0.94
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +1
Query: 583 STLIFKCSHNKISNTSLITFW 645
ST IF CS +KI N L+ FW
Sbjct: 512 STFIFLCSLSKILNGPLVPFW 532
>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 27.9 bits (59), Expect = 1.6
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Frame = +3
Query: 75 IHQAIDHFSDSPPSGRSHSFHTHHYVSNHSDHFHHIHRGSRYLISHRPDSPTNSSPRCRT 254
IH S SP S S + H + Y+S+ F S+ + SH P + + R
Sbjct: 93 IHSPTFTLSVSPDSQSSSATHQNDYISSPHADFSFSPPASK-IQSHEPLNDMAAVHPLRP 151
Query: 255 IRISSARS-PEPRLARV 302
+S S PEP+ A V
Sbjct: 152 SHVSGPLSPPEPKAASV 168
>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 515
Score = 27.9 bits (59), Expect = 1.6
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
Frame = +3
Query: 60 PSRIKIHQAIDHFSDSPPSGRSHSFHTHHYVSNH---SDHFHHIHRGSRYLISHR-PDSP 227
P+ ++ HQ D + S H + +S S H HH S Y +S P SP
Sbjct: 81 PAVLQKHQQEDSGNSSQSPTSPHPSNQPAMLSPSTAASQHHHHHSSSSSYAVSPTSPTSP 140
Query: 228 TNSSP 242
T+S P
Sbjct: 141 TSSGP 145
>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 604
Score = 27.1 bits (57), Expect = 2.9
Identities = 10/40 (25%), Positives = 19/40 (47%)
Frame = +3
Query: 60 PSRIKIHQAIDHFSDSPPSGRSHSFHTHHYVSNHSDHFHH 179
P+ + + FS P G S+ + H+++N+ HH
Sbjct: 371 PTHVSAATGSNTFSPDFPYGNSYGNGSSHFIANYGGSVHH 410
>SPAC23H4.10c |thi4||thiamine-phosphate
dipyrophosphorylase/hydroxyethylthiazole kinase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 518
Score = 26.2 bits (55), Expect = 5.0
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = -3
Query: 373 IARVLVHIGHVRIRGINGSNLVTETRASRGSGERAELIRIV 251
++++ +G V I G+N SN+ S +G+R + I +V
Sbjct: 159 VSKMHCQLGTVAIAGLNSSNIQRVIYLSEANGKRIDGIALV 199
>SPCC1753.02c |git3||G-protein coupled receptor
Git3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 466
Score = 25.8 bits (54), Expect = 6.6
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +2
Query: 104 FTPIRTKSFFPYTPLRF 154
F ++T+ + PYTP+RF
Sbjct: 169 FVNLQTRCYLPYTPVRF 185
>SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 25.4 bits (53), Expect = 8.7
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +2
Query: 140 TPLRFEPFRPFPSYPQRFPIFNFPSPGFTDEQFPAMQNYPNQ 265
+P+ + P PS+P PI+N S G+ + P M Y NQ
Sbjct: 451 SPMYYNYNYPQPSFPPFHPIYN-DSIGYYSQANPQMY-YANQ 490
>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 286
Score = 25.4 bits (53), Expect = 8.7
Identities = 11/34 (32%), Positives = 14/34 (41%)
Frame = +3
Query: 93 HFSDSPPSGRSHSFHTHHYVSNHSDHFHHIHRGS 194
H S S H+ H+ +H H HH H S
Sbjct: 7 HKGGSDDSTHHHTHDYDHHNHDHHGHDHHSHDSS 40
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,886,727
Number of Sequences: 5004
Number of extensions: 60556
Number of successful extensions: 181
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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