Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0908
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485... 32 0.42
02_05_0551 + 29907768-29907909,29907995-29909280 31 0.98
04_04_1285 - 32382614-32382720,32383032-32383710,32383816-323839... 31 1.3
02_02_0694 + 13013966-13014361 31 1.3
12_01_0019 - 135627-135983,136564-136797,137118-137196,137268-13... 30 2.3
08_02_0707 - 20212190-20214592 30 2.3
02_05_0410 + 28744716-28744841,28745361-28745965,28746151-287462... 30 2.3
09_06_0147 + 21195222-21195377,21195471-21195522,21196842-212043... 29 3.9
12_02_1212 - 27043723-27044241,27044483-27044850,27045513-27045753 29 5.2
10_08_1052 - 22567937-22568329,22568436-22568669,22568787-225691... 29 5.2
03_05_0754 + 27452203-27452242,27452360-27455611,27456480-274565... 29 5.2
11_06_0514 - 24477720-24479915 28 6.9
08_01_0619 + 5412058-5413224,5413357-5413476,5413755-5413831,541... 28 6.9
03_05_0509 - 25032494-25033156 28 6.9
02_04_0449 + 23010099-23010317,23010873-23010934,23011399-230114... 28 6.9
11_01_0359 - 2731522-2732346 28 9.1
10_06_0107 + 10840633-10841200,10841364-10841488,10856838-10857380 28 9.1
06_03_0867 + 25534760-25539620,25540662-25540857,25540957-255411... 28 9.1
05_05_0155 + 22787658-22787930,22788029-22788096,22789600-227899... 28 9.1
05_01_0214 - 1615519-1616775 28 9.1
>05_03_0235 -
10747649-10748118,10748226-10748314,10748477-10748574,
10748934-10749046,10749107-10749200,10749557-10749589,
10749734-10749851,10750110-10750210,10751036-10751233,
10751337-10751471,10751752-10751830,10753650-10753738,
10753835-10753987,10754100-10754285
Length = 651
Score = 32.3 bits (70), Expect = 0.42
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +3
Query: 120 RSHSFHTHHYVSNHSDHFHHIHRG 191
R H H H + +H DH HH H G
Sbjct: 537 RHHHDHRHRHGHSHGDHHHHYHGG 560
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/40 (32%), Positives = 16/40 (40%)
Frame = +3
Query: 117 GRSHSFHTHHYVSNHSDHFHHIHRGSRYLISHRPDSPTNS 236
G SH H HHY H H H + + H D +S
Sbjct: 547 GHSHGDHHHHYHGGHHQRRRHHHPPAWDVEGHHHDRQQHS 586
>02_05_0551 + 29907768-29907909,29907995-29909280
Length = 475
Score = 31.1 bits (67), Expect = 0.98
Identities = 18/55 (32%), Positives = 25/55 (45%)
Frame = -1
Query: 249 CIAGNCSSVNPGDGKLNIGNLCGYDGNGLNGSKRSGVYGKNDFVLMGVNLKNGLL 85
C A +CS + + G CGY + +GS +GVY + L G N G L
Sbjct: 199 CAAASCSQLALYSNGCS-GGQCGYVVSYGDGSTTTGVYSSDTLTLTGSNALKGFL 252
>04_04_1285 -
32382614-32382720,32383032-32383710,32383816-32383926,
32384007-32384065,32384163-32384271,32384387-32384575,
32384650-32385476,32385501-32385633
Length = 737
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = +2
Query: 62 FAYQDSSGNRPFFRFTPIRTKSFFPYTPLRFEPFRPFPSYPQRFPI-FNFPSPGFTDEQF 238
+ +Q N P + + +P TP + + +PS P + I N+PS T Q+
Sbjct: 547 YQHQQIQSNHPSTPYQHQAQSTSYPSTPYQDQIHSSYPSNPTQHQIHLNYPS---TPNQY 603
Query: 239 PAMQNYPN 262
+ YPN
Sbjct: 604 QSHSTYPN 611
>02_02_0694 + 13013966-13014361
Length = 131
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +3
Query: 36 YPTTGESVPSRIKIHQAIDHFSD-SPPSGRSHSFHTHHYVSNHSDHFHHIHRG 191
+P +P+R K+ A+ F D S PS + + HH+ H H HH HRG
Sbjct: 43 HPALALHLPTR-KMLLAVASFDDASSPSSLTTTDRHHHH---HRHHGHHHHRG 91
>12_01_0019 -
135627-135983,136564-136797,137118-137196,137268-137383,
137847-137991,138177-138594,138644-138649,139315-139945
Length = 661
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Frame = +3
Query: 174 HHIHRGSRYLISHRPDSPTNSSPRCRTIRISSARSPEPR----LARVSVTKLLPLIP 332
HH H+ + + D+ N SP RT+ + P R L+ +S+T+L+ L+P
Sbjct: 122 HHQHQPATPTETETEDTAANDSPPPRTLPVRLLNIPVDRLRSTLSTLSLTELIDLVP 178
>08_02_0707 - 20212190-20214592
Length = 800
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 99 SDSPPSGRSHSFHTHHYVSNHSDHFHHIH 185
S S SHS H+H +V H DH +H H
Sbjct: 501 SHSHSHSHSHS-HSHSHVHGHEDHHNHDH 528
>02_05_0410 +
28744716-28744841,28745361-28745965,28746151-28746270,
28746597-28746737,28748626-28749370
Length = 578
Score = 29.9 bits (64), Expect = 2.3
Identities = 18/76 (23%), Positives = 37/76 (48%)
Frame = +3
Query: 36 YPTTGESVPSRIKIHQAIDHFSDSPPSGRSHSFHTHHYVSNHSDHFHHIHRGSRYLISHR 215
+PT ++ + H A + S+S SG S + + S+HS + HH H+ + L+
Sbjct: 370 WPTQRNALAGSTRSHHAKNSSSNSSSSGASSASKNN---SSHSGYHHHHHQ--KPLVKAE 424
Query: 216 PDSPTNSSPRCRTIRI 263
P+ + ++ T+ +
Sbjct: 425 PNDQSAAATTAATVPV 440
>09_06_0147 +
21195222-21195377,21195471-21195522,21196842-21204362,
21204453-21205031,21205176-21205484,21205638-21205718,
21205971-21206279,21207430-21207816,21207964-21208767,
21208856-21209218,21209437-21209667,21209934-21210278,
21210494-21210712,21210759-21210815,21210978-21211322,
21211538-21211756,21211803-21211859,21212022-21212366,
21212584-21212814,21213100-21213458
Length = 4322
Score = 29.1 bits (62), Expect = 3.9
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Frame = +3
Query: 60 PSRIKIHQAIDHFSDS--PPSGRSHSFHTHHYVSNHSDHFH--HIHRGSRYLISHRPDSP 227
P+ K ++D+FS+S P SG SHS + SD H ++R R H ++
Sbjct: 368 PTPQKPPASLDNFSESDGPISGASHSQISPRTAKEDSDRLHASDLYRSDRKSTGHSYEAT 427
Query: 228 TNSSP 242
SP
Sbjct: 428 YGKSP 432
>12_02_1212 - 27043723-27044241,27044483-27044850,27045513-27045753
Length = 375
Score = 28.7 bits (61), Expect = 5.2
Identities = 19/70 (27%), Positives = 31/70 (44%)
Frame = +3
Query: 30 QLYPTTGESVPSRIKIHQAIDHFSDSPPSGRSHSFHTHHYVSNHSDHFHHIHRGSRYLIS 209
Q Y + + I IDH SD+ + RSHS H V++ HR S +++
Sbjct: 268 QHYAGSASMAAAAANIVDVIDHSSDAETTTRSHSHSQSHLVADIR------HRQSPFMLD 321
Query: 210 HRPDSPTNSS 239
+ ++SS
Sbjct: 322 FHAGTASSSS 331
>10_08_1052 -
22567937-22568329,22568436-22568669,22568787-22569111,
22569239-22569484,22569576-22569916,22570070-22570150,
22570275-22570394,22570549-22570650,22570900-22571035,
22571210-22571362,22572605-22572906
Length = 810
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Frame = +3
Query: 78 HQAIDHFSDSPPSGRS--HSFHTHHYVSNHSDHFHHIHRGSRYLISHRPDSPTNSSP 242
H+ ++ + S ++ H +H HH + + H HH H+ H S T SP
Sbjct: 742 HRQVEEEEEESKSSQATTHYYHHHHEQTTTTTH-HHYHQHEHMSHYHMGPSDTADSP 797
>03_05_0754 + 27452203-27452242,27452360-27455611,27456480-27456533,
27456774-27456872,27456948-27457012,27457476-27457575,
27458326-27458408,27458494-27458569,27458920-27459698
Length = 1515
Score = 28.7 bits (61), Expect = 5.2
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = -3
Query: 331 GINGSNLVTETRASRGSGERAELIRIVLHRGELFVGESGRWEI 203
G+NG E +RG R E + +V H GEL VG E+
Sbjct: 1382 GVNGGG--DEHPEARGRPRRPEAVVLVAHVGELLVGGDRHQEV 1422
>11_06_0514 - 24477720-24479915
Length = 731
Score = 28.3 bits (60), Expect = 6.9
Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -3
Query: 229 VGESGRWEIKYREPL-WI*WKWSEWFET*WCVWK 131
V + RW Y++P+ W+ W+W+ +T W W+
Sbjct: 400 VKDRSRW---YKKPMEWLEWRWNFRVKTMWDSWR 430
>08_01_0619 +
5412058-5413224,5413357-5413476,5413755-5413831,
5414201-5414321
Length = 494
Score = 28.3 bits (60), Expect = 6.9
Identities = 17/55 (30%), Positives = 23/55 (41%)
Frame = +3
Query: 168 HFHHIHRGSRYLISHRPDSPTNSSPRCRTIRISSARSPEPRLARVSVTKLLPLIP 332
H HH H + + P TN +PR R R S + P P R + P +P
Sbjct: 13 HHHHHHHWADARVPLMPKHATNPNPR-RHHRPSPSIPPPPPPQRPPAATVAPSVP 66
>03_05_0509 - 25032494-25033156
Length = 220
Score = 28.3 bits (60), Expect = 6.9
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +3
Query: 117 GRSHSFHTHHYVSNHSDHFHHIHR 188
GRS S HH+ +H H H HR
Sbjct: 4 GRSSSSSRHHHGHHHHHHHHRRHR 27
>02_04_0449 +
23010099-23010317,23010873-23010934,23011399-23011450,
23011803-23011917,23012024-23012118,23012852-23012958,
23013042-23013156,23014159-23014203,23014324-23014392
Length = 292
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +3
Query: 147 YVSNHSDHFHHIHRGSRYLISHRPDSPTN 233
Y +N D F H G R +SH P+ P N
Sbjct: 101 YFTNEPDLFDVYHAGYREQMSHWPEQPVN 129
>11_01_0359 - 2731522-2732346
Length = 274
Score = 27.9 bits (59), Expect = 9.1
Identities = 10/28 (35%), Positives = 12/28 (42%)
Frame = +3
Query: 93 HFSDSPPSGRSHSFHTHHYVSNHSDHFH 176
H PP H++H HHY H H
Sbjct: 47 HSHSHPPPPPPHAYHHHHYPPPPPPHHH 74
>10_06_0107 + 10840633-10841200,10841364-10841488,10856838-10857380
Length = 411
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 186 RGSRYLISHRPDSPTNSSPRCRTIRISSARSPEPR 290
R +RY + H P S +S RC + I++ R P PR
Sbjct: 118 RRTRYGLCHHPTSRRSSRRRCSSTSITT-RRPPPR 151
>06_03_0867 +
25534760-25539620,25540662-25540857,25540957-25541104,
25541673-25541751,25542151-25542238,25542330-25542600,
25542676-25542718,25542801-25542904,25543374-25543790
Length = 2068
Score = 27.9 bits (59), Expect = 9.1
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +3
Query: 123 SHSFHTHHYVSNHSDHFHH 179
SHS H +H +H H HH
Sbjct: 51 SHSHHQYHLPDHHHHHHHH 69
>05_05_0155 +
22787658-22787930,22788029-22788096,22789600-22789915,
22790207-22790323
Length = 257
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/52 (28%), Positives = 19/52 (36%)
Frame = +3
Query: 87 IDHFSDSPPSGRSHSFHTHHYVSNHSDHFHHIHRGSRYLISHRPDSPTNSSP 242
+ H PP H H HH+ +H H H H H P P + P
Sbjct: 20 LSHIFAPPPP---HLRHPHHHPPHHHPHPPHHHPPHHPHPPHHPHPPHHPHP 68
>05_01_0214 - 1615519-1616775
Length = 418
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Frame = +3
Query: 117 GRSHSFHTHHYVSNHSDHFHHIHRGSRY-LISHRPDSPTNS 236
G H H+H + SDH HH H + + H D NS
Sbjct: 191 GHGHG-HSHDHDHGGSDHDHHHHEDQEHGHVHHHEDGHGNS 230
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,018,690
Number of Sequences: 37544
Number of extensions: 383510
Number of successful extensions: 1163
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1069
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1134
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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