Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0908
(750 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U13642-8|AAG00040.1| 428|Caenorhabditis elegans Similar to tran... 33 0.16
U13642-7|AAZ32791.1| 446|Caenorhabditis elegans Similar to tran... 33 0.16
Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical pr... 33 0.22
U23523-6|AAC46561.1| 86|Caenorhabditis elegans Hypothetical pr... 33 0.29
Z66514-1|CAA91341.3| 198|Caenorhabditis elegans Hypothetical pr... 32 0.50
AL132952-10|CAB63384.1| 591|Caenorhabditis elegans Hypothetical... 30 1.5
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 30 1.5
U23523-4|AAC46557.1| 83|Caenorhabditis elegans Hypothetical pr... 30 2.0
AC006696-10|AAF39990.1| 228|Caenorhabditis elegans Hypothetical... 30 2.0
U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical pr... 29 2.7
AC006714-6|AAN84810.2| 339|Caenorhabditis elegans Hypothetical ... 29 3.5
U23523-9|AAC46564.1| 147|Caenorhabditis elegans Hypothetical pr... 29 4.7
U23523-7|AAC46562.2| 85|Caenorhabditis elegans Hypothetical pr... 28 6.2
AF125445-1|AAD12803.2| 550|Caenorhabditis elegans Hypothetical ... 28 6.2
AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily a... 28 6.2
Z82060-3|CAB04883.1| 206|Caenorhabditis elegans Hypothetical pr... 28 8.1
Z70267-3|CAA94214.1| 534|Caenorhabditis elegans Hypothetical pr... 28 8.1
Z70267-2|CAA94213.1| 525|Caenorhabditis elegans Hypothetical pr... 28 8.1
U40417-12|AAM69086.1| 143|Caenorhabditis elegans Hypothetical p... 28 8.1
>U13642-8|AAG00040.1| 428|Caenorhabditis elegans Similar to
transporter of divalentcations protein 1, isoform a
protein.
Length = 428
Score = 33.5 bits (73), Expect = 0.16
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +3
Query: 42 TTGESVP-SRIKIHQAIDHFSDSPPSGRSHSFHTHHYVSNHSDHFHHIH 185
+ GE VP S IH++ + S G SH + H + H DH H H
Sbjct: 336 SAGEQVPYSNGHIHKSEGNHSHDNGHGHSHDHNDHGHSHGHDDHGHDSH 384
>U13642-7|AAZ32791.1| 446|Caenorhabditis elegans Similar to
transporter of divalentcations protein 1, isoform b
protein.
Length = 446
Score = 33.5 bits (73), Expect = 0.16
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +3
Query: 42 TTGESVP-SRIKIHQAIDHFSDSPPSGRSHSFHTHHYVSNHSDHFHHIH 185
+ GE VP S IH++ + S G SH + H + H DH H H
Sbjct: 354 SAGEQVPYSNGHIHKSEGNHSHDNGHGHSHDHNDHGHSHGHDDHGHDSH 402
>Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical
protein T10B10.1 protein.
Length = 428
Score = 33.1 bits (72), Expect = 0.22
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +2
Query: 110 PIRTKSFFPYTPLRFEPFRPFPSYPQ-RFPIFNFPSPGFTDEQFPAMQNYP 259
P S +P +P EP P PSYP +P ++PSP + +P+ +YP
Sbjct: 345 PETPDSGYP-SPAPQEPAHPSPSYPSPSYPSPSYPSPSYPSPSYPS-PSYP 393
Score = 32.7 bits (71), Expect = 0.29
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +2
Query: 134 PYTPLRFEPFRPFPSYPQ-RFPIFNFPSPGFTDEQFPAMQNY 256
P P P P PSYP +P ++PSP + +PA Y
Sbjct: 357 PQEPAHPSPSYPSPSYPSPSYPSPSYPSPSYPSPSYPAEPAY 398
>U23523-6|AAC46561.1| 86|Caenorhabditis elegans Hypothetical
protein F53A9.6 protein.
Length = 86
Score = 32.7 bits (71), Expect = 0.29
Identities = 15/39 (38%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Frame = +3
Query: 78 HQAIDHFSDSPPSGRSHS-FHTHHYVSNHSDHFHHIHRG 191
H H DS G H H HY S++ H HH H G
Sbjct: 46 HMDTHHHHDSHHHGGHHGGHHGGHYESHYESHHHHGHHG 84
>Z66514-1|CAA91341.3| 198|Caenorhabditis elegans Hypothetical
protein K01A11.1 protein.
Length = 198
Score = 31.9 bits (69), Expect = 0.50
Identities = 17/73 (23%), Positives = 31/73 (42%)
Frame = +3
Query: 63 SRIKIHQAIDHFSDSPPSGRSHSFHTHHYVSNHSDHFHHIHRGSRYLISHRPDSPTNSSP 242
SRI+ ++I +PP+ H H HH+ N + + R ++ S P
Sbjct: 62 SRIRSEKSIPSTLTTPPTVTYHRRHHHHHKKNRREKNEELCESQRKIVELNTQSHEFDPP 121
Query: 243 RCRTIRISSARSP 281
+R +++SP
Sbjct: 122 FVVEVRCLNSQSP 134
>AL132952-10|CAB63384.1| 591|Caenorhabditis elegans Hypothetical
protein Y51H4A.13 protein.
Length = 591
Score = 30.3 bits (65), Expect = 1.5
Identities = 23/79 (29%), Positives = 30/79 (37%), Gaps = 2/79 (2%)
Frame = +3
Query: 54 SVPSRIKIHQAIDHFS-DSPPSG-RSHSFHTHHYVSNHSDHFHHIHRGSRYLISHRPDSP 227
+VPS IH DH S +PP + H HH + H H H R S H P
Sbjct: 274 TVPSNTNIHN--DHCSGQAPPDPYQPHGHPAHHIPNPHQLHHQHRRRYSSPRRFHGNHQP 331
Query: 228 TNSSPRCRTIRISSARSPE 284
+ R + + PE
Sbjct: 332 RRNPSSTRLVIRYGSSPPE 350
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Frame = +3
Query: 126 HSFHTHH----YVSNHSDHFHHIHRGSRYLISHRPDSPTNSSPRCRTIRISSARSPE 284
H HTHH + +H H HH H ++ S S ++SS + SS+ S E
Sbjct: 78 HGHHTHHAHGAHPGHHEVHHHHHHVKAQDSSSSSSSSSSSSSSSSSSSSSSSSSSSE 134
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 4/51 (7%)
Frame = +3
Query: 93 HFSDSPPSGRSHSFHTHHYVSNHSDHFHH----IHRGSRYLISHRPDSPTN 233
H S P+ H HH ++H H HH +H G H +P +
Sbjct: 552 HGSHHSPAHHGHHGEHHHAPAHHGHHGHHGSHGVHHGHHESHGHGHHAPAH 602
>U23523-4|AAC46557.1| 83|Caenorhabditis elegans Hypothetical
protein F53A9.2 protein.
Length = 83
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +3
Query: 93 HFSDSPPSGRSHSFHTHHYVSNHSDHFHHIHRG 191
H S G + + H HH+ +H H HH H G
Sbjct: 49 HHSFLHELGHALTGHHHHHHGHHFGHHHHHHHG 81
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +3
Query: 78 HQAIDHFSDSPPSGRSHSFHTHHYVSNHSDHFHHIH 185
H + H +G H H HH+ H H HH H
Sbjct: 49 HHSFLHELGHALTGHHHHHHGHHF--GHHHHHHHGH 82
>AC006696-10|AAF39990.1| 228|Caenorhabditis elegans Hypothetical
protein W08E12.1 protein.
Length = 228
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/67 (28%), Positives = 28/67 (41%)
Frame = +3
Query: 123 SHSFHTHHYVSNHSDHFHHIHRGSRYLISHRPDSPTNSSPRCRTIRISSARSPEPRLARV 302
++S+H H ++ H DH+HH H + H T S P + S S P +
Sbjct: 12 NYSYHEHAELNPH-DHYHH-HHYPHSSVHHTECYQTLSCPSDLPVETSYYNSVPPSYQDL 69
Query: 303 SVTKLLP 323
T L P
Sbjct: 70 GQTDLSP 76
>U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical protein
F42C5.10 protein.
Length = 1292
Score = 29.5 bits (63), Expect = 2.7
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +3
Query: 135 HTHHYVSNHSDHFHHIHR 188
H HHY ++ S+H HH H+
Sbjct: 949 HHHHYHTDGSEHVHHYHQ 966
>AC006714-6|AAN84810.2| 339|Caenorhabditis elegans Hypothetical
protein Y119D3B.12a protein.
Length = 339
Score = 29.1 bits (62), Expect = 3.5
Identities = 19/68 (27%), Positives = 26/68 (38%)
Frame = +3
Query: 81 QAIDHFSDSPPSGRSHSFHTHHYVSNHSDHFHHIHRGSRYLISHRPDSPTNSSPRCRTIR 260
++ D +D S H H+H +H DH H HRG HR R R+ R
Sbjct: 266 RSTDRGADRKRSTEQHH-HSHRSSRDHRDHRHRDHRGEHR--EHREHKEHRRDDRHRSER 322
Query: 261 ISSARSPE 284
+ E
Sbjct: 323 SERSERSE 330
>U23523-9|AAC46564.1| 147|Caenorhabditis elegans Hypothetical
protein F53A9.9 protein.
Length = 147
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/41 (29%), Positives = 16/41 (39%)
Frame = +3
Query: 57 VPSRIKIHQAIDHFSDSPPSGRSHSFHTHHYVSNHSDHFHH 179
VP + +H DH D H HH+ +H H H
Sbjct: 109 VPGGVDVHD--DHHHDGHHKKHGRKEHDHHHGHHHGHHHKH 147
>U23523-7|AAC46562.2| 85|Caenorhabditis elegans Hypothetical
protein F53A9.7 protein.
Length = 85
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Frame = +3
Query: 78 HQAID-HFSDSPPSGRSHSFH--THHYVSNHSDHFHHIHRG 191
H +D H + G H H HY S+H H H H G
Sbjct: 43 HGHVDTHHHEESHHGEHHGGHHGVQHYESHHESHHHGGHHG 83
>AF125445-1|AAD12803.2| 550|Caenorhabditis elegans Hypothetical
protein Y24D9B.1 protein.
Length = 550
Score = 28.3 bits (60), Expect = 6.2
Identities = 22/79 (27%), Positives = 29/79 (36%), Gaps = 2/79 (2%)
Frame = +3
Query: 54 SVPSRIKIHQAIDHF-SDSPPSG-RSHSFHTHHYVSNHSDHFHHIHRGSRYLISHRPDSP 227
+VPS IH DH +PP + H HH + H H H R S H P
Sbjct: 274 TVPSNTNIHN--DHGPGQAPPDPYQPHGHPAHHIPNPHQLHHQHRRRYSSPRRFHGNHQP 331
Query: 228 TNSSPRCRTIRISSARSPE 284
+ R + + PE
Sbjct: 332 RRNPSSTRLVIRYGSSPPE 350
>AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily
assigned gene nameprotein 192 protein.
Length = 2957
Score = 28.3 bits (60), Expect = 6.2
Identities = 19/59 (32%), Positives = 28/59 (47%)
Frame = +2
Query: 11 LPLFNSSALPNNRGVGAFAYQDSSGNRPFFRFTPIRTKSFFPYTPLRFEPFRPFPSYPQ 187
+PLFN + N G GA ++ +RP TP+ + P TP + E PS P+
Sbjct: 2589 IPLFNEMS-GNGTGSGAAPSSKAASSRPTPAATPLAVATPKPSTP-KVEKSSATPSAPE 2645
>Z82060-3|CAB04883.1| 206|Caenorhabditis elegans Hypothetical
protein T27F6.4 protein.
Length = 206
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +3
Query: 141 HHYVSNHSD-HFHHIHRGSRYLISHRPDSPTNS 236
HH S HS HH H S ++ RP SP++S
Sbjct: 105 HHLDSVHSSSEHHHHHHLSLSSLTRRPGSPSSS 137
>Z70267-3|CAA94214.1| 534|Caenorhabditis elegans Hypothetical
protein K04C1.2b protein.
Length = 534
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 204 ISHRPDSPTNSSPRCRTIRISSARSPE 284
IS+R D P NS+P+C + ++ SP+
Sbjct: 185 ISNRNDDPQNSTPKCSDTKKNTKISPK 211
>Z70267-2|CAA94213.1| 525|Caenorhabditis elegans Hypothetical
protein K04C1.2a protein.
Length = 525
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 204 ISHRPDSPTNSSPRCRTIRISSARSPE 284
IS+R D P NS+P+C + ++ SP+
Sbjct: 176 ISNRNDDPQNSTPKCSDTKKNTKISPK 202
>U40417-12|AAM69086.1| 143|Caenorhabditis elegans Hypothetical
protein T08A9.2 protein.
Length = 143
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -1
Query: 246 IAGNCSSVNPGDGKLNIGNLCGYDG 172
+AG+ S V D KLNI + C YDG
Sbjct: 74 MAGSKSEVTTIDPKLNIYHKCNYDG 98
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,030,501
Number of Sequences: 27780
Number of extensions: 348175
Number of successful extensions: 1139
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1116
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -