Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0908
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   3.1  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        22   5.3  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   5.3  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    22   7.1  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    22   7.1  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    22   7.1  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    22   7.1  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    22   7.1  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    22   7.1  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   9.3  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/26 (34%), Positives = 10/26 (38%)
 Frame = +3

Query: 108 PPSGRSHSFHTHHYVSNHSDHFHHIH 185
           PPS   H  H   Y  +     HH H
Sbjct: 313 PPSYHPHQHHPSQYHPHRGSSPHHQH 338


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +1

Query: 292 WPGFQSPSCFH*SP*SEHAQCE 357
           W  +  P C++ +P    AQCE
Sbjct: 213 WGYYAYPYCYNLTPNQPSAQCE 234


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +3

Query: 117 GRSHSFHTHHYVSNHSDHFHHIH 185
           G SH   T H+  +H+   HH H
Sbjct: 422 GHSHIHATPHHHHSHAATPHHQH 444


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +2

Query: 92  PFFRFTPIRTKSFFPYTPLRFEP 160
           PF RF P     F P    RFEP
Sbjct: 152 PFPRFIPPNAYRFRPPLNPRFEP 174


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +2

Query: 92  PFFRFTPIRTKSFFPYTPLRFEP 160
           PF RF P     F P    RFEP
Sbjct: 155 PFPRFIPPNAYRFRPPLNPRFEP 177


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +2

Query: 92  PFFRFTPIRTKSFFPYTPLRFEP 160
           PF RF P     F P    RFEP
Sbjct: 155 PFPRFIPPNAYRFRPPLNPRFEP 177


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +2

Query: 92  PFFRFTPIRTKSFFPYTPLRFEP 160
           PF RF P     F P    RFEP
Sbjct: 155 PFPRFIPPNAYRFRPPLNPRFEP 177


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +2

Query: 92  PFFRFTPIRTKSFFPYTPLRFEP 160
           PF RF P     F P    RFEP
Sbjct: 155 PFPRFIPPNAYRFRPPLNPRFEP 177


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +2

Query: 92  PFFRFTPIRTKSFFPYTPLRFEP 160
           PF RF P     F P    RFEP
Sbjct: 375 PFPRFIPPNVYRFRPPLNPRFEP 397


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -3

Query: 694 NWILENV*PXFLKPLKTKM*SSW 626
           NWILEN+    + P  T     W
Sbjct: 508 NWILENILDMLVLPKLTLEVEEW 530


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,545
Number of Sequences: 438
Number of extensions: 4586
Number of successful extensions: 18
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)