Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0908
(750 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g10810.1 68416.m01301 zinc finger (C3HC4-type RING finger) fa... 37 0.016
At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp... 31 0.62
At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp... 31 0.62
At1g79580.3 68414.m09279 no apical meristem (NAM) family protein... 31 1.1
At1g79580.2 68414.m09278 no apical meristem (NAM) family protein... 31 1.1
At1g79580.1 68414.m09277 no apical meristem (NAM) family protein... 31 1.1
At4g20070.1 68417.m02936 peptidase M20/M25/M40 family protein co... 30 1.4
At3g46260.1 68416.m05007 protein kinase-related contains low sim... 30 1.4
At4g21450.2 68417.m03102 vesicle-associated membrane family prot... 29 2.5
At4g21450.1 68417.m03103 vesicle-associated membrane family prot... 29 2.5
At2g43680.2 68415.m05430 calmodulin-binding family protein simil... 29 3.3
At2g43680.1 68415.m05429 calmodulin-binding family protein simil... 29 3.3
At1g12810.1 68414.m01488 proline-rich family protein contains pr... 29 3.3
At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein... 29 4.4
At2g36710.1 68415.m04504 pectinesterase family protein contains ... 29 4.4
At3g62680.1 68416.m07041 proline-rich family protein contains pr... 28 5.8
At1g80480.1 68414.m09427 PRLI-interacting factor L, putative sim... 28 5.8
At1g35880.1 68414.m04457 hypothetical protein 28 5.8
At3g58020.1 68416.m06466 DNAJ heat shock N-terminal domain-conta... 28 7.6
At3g09100.2 68416.m01070 mRNA capping enzyme family protein simi... 28 7.6
At3g09100.1 68416.m01071 mRNA capping enzyme family protein simi... 28 7.6
At1g11310.1 68414.m01299 seven transmembrane MLO family protein ... 28 7.6
At1g52880.1 68414.m05979 no apical meristem (NAM) family protein... 23 8.8
>At3g10810.1 68416.m01301 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 Zinc
finger, C3HC4 type (RING finger)
Length = 496
Score = 36.7 bits (81), Expect = 0.016
Identities = 24/71 (33%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Frame = +3
Query: 90 DHFSDSP-PSGRSHSFHTHHYVSNHSDHFHHIHRGSRYLISHRPDSPTNSSPRCRTIRIS 266
D + SP PS HS H HH+ +H H HH H +H N SP+ +S
Sbjct: 315 DSSTKSPSPSPSPHSKHHHHHHHHHHHHHHHHH-------NHHHHHHHNLSPKMAP-EVS 366
Query: 267 SARSPEPRLAR 299
SP P +R
Sbjct: 367 PVASPAPHRSR 377
Score = 36.7 bits (81), Expect = 0.016
Identities = 19/63 (30%), Positives = 25/63 (39%)
Frame = +3
Query: 99 SDSPPSGRSHSFHTHHYVSNHSDHFHHIHRGSRYLISHRPDSPTNSSPRCRTIRISSARS 278
S SP S H H HH+ +H H HH H P+ +SP R + +
Sbjct: 324 SPSPHSKHHHHHHHHHHHHHHHHHNHHHHHHHNLSPKMAPEVSPVASPAPHRSRKRAPSA 383
Query: 279 PEP 287
P P
Sbjct: 384 PPP 386
>At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein contains Pfam domain PF01805:
Surp module
Length = 844
Score = 31.5 bits (68), Expect = 0.62
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Frame = +3
Query: 27 HQLYPTT---GESVPSRIKIHQAIDHFSDSPPSGRSHSFHTHHYVSNHSDHFHHIHRGSR 197
H+LY ++ GE K + +D+ D H H S+ +H HH HR SR
Sbjct: 705 HELYDSSDNEGEHRHRSSKHSKDVDYSKDKRSHHHRSRKHEKHRDSSDDEHHHHRHRSSR 764
>At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein contains Pfam domain PF01805:
Surp module
Length = 843
Score = 31.5 bits (68), Expect = 0.62
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Frame = +3
Query: 27 HQLYPTT---GESVPSRIKIHQAIDHFSDSPPSGRSHSFHTHHYVSNHSDHFHHIHRGSR 197
H+LY ++ GE K + +D+ D H H S+ +H HH HR SR
Sbjct: 705 HELYDSSDNEGEHRHRSSKHSKDVDYSKDKRSHHHRSRKHEKHRDSSDDEHHHHRHRSSR 764
>At1g79580.3 68414.m09279 no apical meristem (NAM) family protein
similar to OsNAC7 protein (GI:6730944) [Oryza sativa];
contains weak hit to Pfam PF02365 : No apical meristem
(NAM) protein
Length = 371
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = +3
Query: 72 KIHQAIDHFSDSPPSGRSHSFHTHHYVSNHSDHFHHIH 185
++ + +HF H H Y+S ++DH HH H
Sbjct: 162 RVFKKKNHFRGFHQEQEQDHHHHHQYISTNNDHDHHHH 199
>At1g79580.2 68414.m09278 no apical meristem (NAM) family protein
similar to OsNAC7 protein (GI:6730944) [Oryza sativa];
contains weak hit to Pfam PF02365 : No apical meristem
(NAM) protein
Length = 371
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = +3
Query: 72 KIHQAIDHFSDSPPSGRSHSFHTHHYVSNHSDHFHHIH 185
++ + +HF H H Y+S ++DH HH H
Sbjct: 162 RVFKKKNHFRGFHQEQEQDHHHHHQYISTNNDHDHHHH 199
>At1g79580.1 68414.m09277 no apical meristem (NAM) family protein
similar to OsNAC7 protein (GI:6730944) [Oryza sativa];
contains weak hit to Pfam PF02365 : No apical meristem
(NAM) protein
Length = 371
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = +3
Query: 72 KIHQAIDHFSDSPPSGRSHSFHTHHYVSNHSDHFHHIH 185
++ + +HF H H Y+S ++DH HH H
Sbjct: 162 RVFKKKNHFRGFHQEQEQDHHHHHQYISTNNDHDHHHH 199
>At4g20070.1 68417.m02936 peptidase M20/M25/M40 family protein
contains similarity to hydantoin utilization protein C
[Pseudomonas sp.] SWISS-PROT:Q01264; contains Pfam
profile PF01546: Peptidase family M20/M25/M40
Length = 525
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +3
Query: 84 AIDHFSDSPPSGRSHSFHTHHYVSNHSDHFHHIH 185
A+ H S S S RSH F +H Y ++ H HH H
Sbjct: 2 AVPHPSSS--SSRSHPFLSHVYHTSFHHHHHHNH 33
>At3g46260.1 68416.m05007 protein kinase-related contains low
similarity to light repressible receptor protein kinase
[Arabidopsis thaliana] gi|1321686|emb|CAA66376
Length = 434
Score = 30.3 bits (65), Expect = 1.4
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +3
Query: 6 NVCRCLIHQLYPTTGESVPSRIKIHQAIDHFSDSPPSGR 122
N+C+C I+ + + + + S KIH+ FS P +
Sbjct: 379 NLCKCFINNFFSWSIKQITSHPKIHKIFPSFSKQPKGNK 417
>At4g21450.2 68417.m03102 vesicle-associated membrane family protein
/ VAMP family protein similar to VAP27 GI:6688926
[Nicotiana plumbaginifolia]
Length = 212
Score = 29.5 bits (63), Expect = 2.5
Identities = 20/68 (29%), Positives = 26/68 (38%)
Frame = +3
Query: 105 SPPSGRSHSFHTHHYVSNHSDHFHHIHRGSRYLISHRPDSPTNSSPRCRTIRISSARSPE 284
S S S S H H++ +H H H H Y H S N P S A+S
Sbjct: 43 SGASSSSTSSHLHNHHQHHHQHHHQHHHQLGYNGPHGDGSGQNQHPTPSPSVSSVAKSFL 102
Query: 285 PRLARVSV 308
P R+ +
Sbjct: 103 PTKRRLKL 110
>At4g21450.1 68417.m03103 vesicle-associated membrane family protein
/ VAMP family protein similar to VAP27 GI:6688926
[Nicotiana plumbaginifolia]
Length = 295
Score = 29.5 bits (63), Expect = 2.5
Identities = 20/68 (29%), Positives = 26/68 (38%)
Frame = +3
Query: 105 SPPSGRSHSFHTHHYVSNHSDHFHHIHRGSRYLISHRPDSPTNSSPRCRTIRISSARSPE 284
S S S S H H++ +H H H H Y H S N P S A+S
Sbjct: 43 SGASSSSTSSHLHNHHQHHHQHHHQHHHQLGYNGPHGDGSGQNQHPTPSPSVSSVAKSFL 102
Query: 285 PRLARVSV 308
P R+ +
Sbjct: 103 PTKRRLKL 110
>At2g43680.2 68415.m05430 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 669
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +3
Query: 213 RPDSPTNSSPRCRTIRISSARSPEPR 290
RP SP +SPR + R++S R P PR
Sbjct: 95 RPASPRVASPRPTSPRVASPRVPSPR 120
>At2g43680.1 68415.m05429 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 668
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +3
Query: 213 RPDSPTNSSPRCRTIRISSARSPEPR 290
RP SP +SPR + R++S R P PR
Sbjct: 94 RPASPRVASPRPTSPRVASPRVPSPR 119
>At1g12810.1 68414.m01488 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 129
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +2
Query: 137 YTPLRFEPFRPFPSYPQRFPIFNFPSPGFTDEQFPAMQNY 256
Y P ++ P P YP P +PSP E +P Q Y
Sbjct: 11 YPPPGYQSHYPPPGYPSAPPPPGYPSPPSHHEGYPPPQPY 50
>At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 551
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = +3
Query: 81 QAIDHFSDSPPSGRSHSFHTHHYVSNHSDHFHHIHRGSRY 200
Q+ H S PS R H HH+ H H HH H+ Y
Sbjct: 493 QSSRHHSGPSPS-RWQPSHQHHH---HHQHLHHHHQNHSY 528
>At2g36710.1 68415.m04504 pectinesterase family protein contains
Pfam profile: PF01095 pectinesterase
Length = 407
Score = 28.7 bits (61), Expect = 4.4
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +3
Query: 126 HSFHTHHYVSNHSDHFHH 179
H H HH+ +H H+HH
Sbjct: 50 HKHHHHHHHHHHHHHYHH 67
>At3g62680.1 68416.m07041 proline-rich family protein contains
proline-rich region, INTERPRO:IPR000694
Length = 313
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = +2
Query: 92 PFFRFTPIRTKSFFP---YTPLRFEPFRPFPSYPQRFPIFNFPSPGF 223
P ++ TP+ TK P YTP ++P P P ++ P ++ P P +
Sbjct: 122 PVYKPTPVYTKPTIPPPVYTPPVYKP-TPSPPVYKKSPSYSSPPPPY 167
>At1g80480.1 68414.m09427 PRLI-interacting factor L, putative
similar to PRLI-interacting factor L [Arabidopsis
thaliana] GI:11139268; contains Pfam profile PF02492:
Cobalamin synthesis protein/P47K
Length = 444
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/46 (30%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Frame = +3
Query: 51 ESVPSRIKIHQAIDHFSDSPPSGRSHSF-HTHHYVSNHSDHFHHIH 185
E + S + DH H+ H HH+ H DH HH H
Sbjct: 297 ERIESSVNEDDKGDHHDHDHDHHHDHNHDHDHHHHDGH-DHHHHSH 341
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +3
Query: 135 HTHHYVSNHSDHFHHIHRG 191
H HH+ NH DH HH H G
Sbjct: 316 HDHHHDHNH-DHDHHHHDG 333
>At1g35880.1 68414.m04457 hypothetical protein
Length = 222
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +3
Query: 192 SRYLISHRPDSPTNSSPRCRTIRISSAR 275
S YL SHR +P +SSP+ I SS R
Sbjct: 54 SSYLSSHRQYNPLSSSPKLHFIASSSPR 81
>At3g58020.1 68416.m06466 DNAJ heat shock N-terminal
domain-containing protein contains Pfam profile PF00226
DnaJ domain
Length = 580
Score = 27.9 bits (59), Expect = 7.6
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +3
Query: 135 HTHHYVSNHSDHFHHIHRGS 194
H++H++ +H H HH H S
Sbjct: 522 HSNHHLHHHHHHHHHHHHNS 541
>At3g09100.2 68416.m01070 mRNA capping enzyme family protein similar
to mRNA capping enzyme [Xenopus laevis] GI:7239232;
contains Pfam profiles PF01331: mRNA capping enzyme
catalytic domain, PF00782: Dual specificity phosphatase
catalytic domain
Length = 672
Score = 27.9 bits (59), Expect = 7.6
Identities = 18/57 (31%), Positives = 23/57 (40%)
Frame = +3
Query: 30 QLYPTTGESVPSRIKIHQAIDHFSDSPPSGRSHSFHTHHYVSNHSDHFHHIHRGSRY 200
Q Y R KI Q + D PPSG F V + + +H+ GSRY
Sbjct: 68 QYYQNRNTKAYDRYKIPQG---WLDCPPSGNEIGFLVPSKVPLNESYNNHVPPGSRY 121
>At3g09100.1 68416.m01071 mRNA capping enzyme family protein similar
to mRNA capping enzyme [Xenopus laevis] GI:7239232;
contains Pfam profiles PF01331: mRNA capping enzyme
catalytic domain, PF00782: Dual specificity phosphatase
catalytic domain
Length = 471
Score = 27.9 bits (59), Expect = 7.6
Identities = 18/57 (31%), Positives = 23/57 (40%)
Frame = +3
Query: 30 QLYPTTGESVPSRIKIHQAIDHFSDSPPSGRSHSFHTHHYVSNHSDHFHHIHRGSRY 200
Q Y R KI Q + D PPSG F V + + +H+ GSRY
Sbjct: 68 QYYQNRNTKAYDRYKIPQG---WLDCPPSGNEIGFLVPSKVPLNESYNNHVPPGSRY 121
>At1g11310.1 68414.m01299 seven transmembrane MLO family protein /
MLO-like protein 2 (MLO2) idenctical to membrane protein
Mlo2 [Arabidopsis thaliana] gi|14091574|gb|AAK53795;
similar to Mlo [Hordeum vulgare subsp. vulgare]
gi|1877221|emb|CAB06083 SWISS-PROT:P93766
Length = 573
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/48 (33%), Positives = 21/48 (43%)
Frame = +3
Query: 141 HHYVSNHSDHFHHIHRGSRYLISHRPDSPTNSSPRCRTIRISSARSPE 284
HH N + H H GS S RP +PT+ S + + RS E
Sbjct: 460 HHTAKNETKHGRH--SGSNTPFSSRPTTPTHGSSPIHLLHNFNNRSVE 505
>At1g52880.1 68414.m05979 no apical meristem (NAM) family protein
contains Pfam PF02365: No apical meristem (NAM) domain;
similar to NAM (no apical meristem) GB:CAA63101 from
[Petunia x hybrida]; identical to cDNA NAC domain
protein GI:4325285
Length = 320
Score = 23.4 bits (48), Expect(2) = 8.8
Identities = 9/36 (25%), Positives = 17/36 (47%)
Frame = +3
Query: 42 TTGESVPSRIKIHQAIDHFSDSPPSGRSHSFHTHHY 149
+TG ++ + +A+ +S PP G + H Y
Sbjct: 109 STGGGGSKKVGVKKALVFYSGKPPKGVKSDWIMHEY 144
Score = 22.6 bits (46), Expect(2) = 8.8
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = +3
Query: 129 SFHTHHYVSNHSDHFHHIH 185
S H HH H D+ HH H
Sbjct: 183 SRHHHHLHHIHLDNDHHRH 201
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,874,749
Number of Sequences: 28952
Number of extensions: 316738
Number of successful extensions: 1163
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1116
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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