Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0907
(750 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0) 155 4e-38
SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086) 149 2e-36
SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0) 138 3e-33
SB_3351| Best HMM Match : No HMM Matches (HMM E-Value=.) 111 8e-25
SB_57454| Best HMM Match : DUF924 (HMM E-Value=1) 99 2e-21
SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.) 91 1e-18
SB_25097| Best HMM Match : No HMM Matches (HMM E-Value=.) 87 1e-17
SB_25096| Best HMM Match : No HMM Matches (HMM E-Value=.) 78 9e-15
SB_4934| Best HMM Match : NAD_binding_2 (HMM E-Value=4.8) 62 5e-10
SB_49248| Best HMM Match : Cpn60_TCP1 (HMM E-Value=1.6) 55 7e-08
SB_30876| Best HMM Match : Ribosomal_S16 (HMM E-Value=7.1) 52 5e-07
SB_56262| Best HMM Match : Cpn60_TCP1 (HMM E-Value=6.6e-15) 52 7e-07
SB_29096| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.00
SB_58467| Best HMM Match : 7tm_1 (HMM E-Value=3.6e-10) 29 3.0
SB_6378| Best HMM Match : Keratin_B2 (HMM E-Value=0.1) 29 3.0
SB_3214| Best HMM Match : Keratin_B2 (HMM E-Value=0.096) 29 3.0
SB_7007| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_48461| Best HMM Match : zf-CCHC (HMM E-Value=0.0016) 29 4.0
SB_25009| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_40864| Best HMM Match : Pox_G5 (HMM E-Value=0.48) 26 4.7
SB_36238| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_22952| Best HMM Match : EGF_2 (HMM E-Value=2e-23) 29 5.3
SB_41690| Best HMM Match : DSL (HMM E-Value=0) 28 7.0
SB_56859| Best HMM Match : rve (HMM E-Value=4.8e-35) 28 9.3
SB_53400| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
SB_57323| Best HMM Match : ShTK (HMM E-Value=0) 28 9.3
SB_41314| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
SB_34182| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
>SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
Length = 531
Score = 155 bits (376), Expect = 4e-38
Identities = 88/220 (40%), Positives = 133/220 (60%), Gaps = 3/220 (1%)
Frame = +1
Query: 25 ILLLREGTDQTQGKPQLVSNINACQLVVDAVRTTLGPRGMDKLIVD--HNGKAVISNDGA 198
+ +L +G ++ + + +S+ + D V++TLGP+GMDK++ NG ++NDGA
Sbjct: 6 VSILNQGAEEERAETARLSSFVGAIAIGDLVKSTLGPKGMDKILQSFGQNGNIQVTNDGA 65
Query: 199 TIMKLLDIIHPAAKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIR 378
TI+K + I +PAAK LV+++K QD EVGDGTTSV +L E+LK + V +HP+ ++
Sbjct: 66 TILKSIGIDNPAAKILVELSKVQDDEVGDGTTSVTVLTSELLKEAEKLVSCKIHPQTIVA 125
Query: 379 AVRTASRLAIEKIKEQAVKIDNKSPEEQRDLLLKCASTAMSSKLIHQQKDHFSKIVVDAV 558
R + + A EK E A + PE+ R+ L+ A T +SSK++ Q +DHF+K+ VDAV
Sbjct: 126 GWRKSVK-AAEKALEAAAVDHSSDPEKFREDLMNIARTTLSSKILVQHRDHFAKLAVDAV 184
Query: 559 LSLDTPLLPLDMIGIKKVPGGALEDSFLVPGVAF-KKLSV 675
L L L+ I I K GG + DSFL G KK+ V
Sbjct: 185 LRLKGS-GDLNAIQIIKKLGGGMVDSFLDEGFLLDKKIGV 223
>SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086)
Length = 724
Score = 149 bits (361), Expect = 2e-36
Identities = 71/91 (78%), Positives = 80/91 (87%)
Frame = +1
Query: 4 SSKMQPQILLLREGTDQTQGKPQLVSNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVI 183
+S QP I+LL+EGTD +QG PQL+SNI+ACQ + DAVRTTLGPRGMDKLIVD GKA I
Sbjct: 634 ASGPQPGIILLKEGTDASQGIPQLISNIDACQFIADAVRTTLGPRGMDKLIVDGRGKATI 693
Query: 184 SNDGATIMKLLDIIHPAAKTLVDIAKSQDAE 276
SNDGATI+ LLDI+HPAAKTLVDIAKSQDAE
Sbjct: 694 SNDGATIINLLDIVHPAAKTLVDIAKSQDAE 724
>SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
Length = 505
Score = 138 bits (335), Expect = 3e-33
Identities = 72/200 (36%), Positives = 127/200 (63%), Gaps = 4/200 (2%)
Frame = +1
Query: 79 SNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIIHPAAKTLVDIA 258
S+I A + V ++T+LGP+GMDK++V +G+ ++NDGATI+ ++++ H AK +V+++
Sbjct: 34 SHILAARAVASILKTSLGPKGMDKMMVSPDGEVTVTNDGATILGMMEVDHQIAKLMVELS 93
Query: 259 KSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVKI 438
KSQD E+GDGTT VV+LAG +L+ + ++ G+HP + A+++A+E + A
Sbjct: 94 KSQDNEIGDGTTGVVVLAGALLEHAEQLLDWGIHPIRIADGYELAAKIALEHMDSIA--- 150
Query: 439 DN-KSPEEQRDLLLKCASTAMSSKLIHQQKDHFSKIVVDAVLS---LDTPLLPLDMIGIK 606
DN ++ ++ L++ A T + SK++ + ++I VDAVLS L+ + ++I ++
Sbjct: 151 DNFPVDKDNKESLIQTAMTTLGSKIVSRCHRPLAEIAVDAVLSVADLERKDVDFELIKVE 210
Query: 607 KVPGGALEDSFLVPGVAFKK 666
GG L+D+ LV GV K
Sbjct: 211 GKEGGKLDDTVLVKGVVVDK 230
>SB_3351| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 175
Score = 111 bits (266), Expect = 8e-25
Identities = 64/119 (53%), Positives = 78/119 (65%), Gaps = 3/119 (2%)
Frame = +1
Query: 403 AIEKIKEQAVKIDNKSPEEQRDLLLKCASTAMSSKLIHQQKDHFSKIVVDAVLSLDTPLL 582
AI++IKE AV + E R LL +CA+TA+SSKLI QK+ F+K+VVDAV+ LD LL
Sbjct: 1 AIKRIKELAVHVKKNDAGEMRQLLERCAATALSSKLIATQKEFFAKMVVDAVMMLD-ELL 59
Query: 583 PLDMIGIKKVPGGALEDSFLVPGVAFKKLSVTLAFECXRR---HTKTADRTPHIELXIE 750
PLDMIG+KKV GGALEDS L+ GVAFKK FE + H K A +EL E
Sbjct: 60 PLDMIGMKKVSGGALEDSMLIEGVAFKKTFSYAGFEMQPKTYNHCKIALLNVELELKAE 118
>SB_57454| Best HMM Match : DUF924 (HMM E-Value=1)
Length = 144
Score = 99 bits (238), Expect = 2e-21
Identities = 58/133 (43%), Positives = 80/133 (60%)
Frame = +1
Query: 253 IAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAV 432
++K QD EVGDGTTSV +LA E+LK + V +HP+ ++ R + + A EK E A
Sbjct: 2 LSKVQDDEVGDGTTSVTVLASELLKEAEKLVSCKIHPQTIVAGWRKSVK-AAEKALEAAA 60
Query: 433 KIDNKSPEEQRDLLLKCASTAMSSKLIHQQKDHFSKIVVDAVLSLDTPLLPLDMIGIKKV 612
+ PE+ RD L+ A T +SSK++ Q +DHF+K+ VDAVL L L+ I I K
Sbjct: 61 VDHSSDPEKFRDDLMNIARTTLSSKILVQHRDHFAKLAVDAVLRLKGS-GDLNAIQIIKK 119
Query: 613 PGGALEDSFLVPG 651
GG + DSFL G
Sbjct: 120 LGGGMVDSFLDEG 132
>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 762
Score = 90.6 bits (215), Expect = 1e-18
Identities = 48/125 (38%), Positives = 77/125 (61%)
Frame = +1
Query: 220 IIHPAAKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASR 399
I HP A + +A +QD GDGTTS V++ GE+LK+ +V EG+HPR++ A +
Sbjct: 171 IQHPTASLIARVATAQDDITGDGTTSNVMIIGELLKQADLYVSEGLHPRLVTEGFEVAKK 230
Query: 400 LAIEKIKEQAVKIDNKSPEEQRDLLLKCASTAMSSKLIHQQKDHFSKIVVDAVLSLDTPL 579
A+E ++E VK+ S E RD L+ A T++ +K+ + D +++VVDAVL++ P
Sbjct: 231 KALEVLEE--VKV---SREMDRDTLINVAKTSLRTKVRTELADLLTEVVVDAVLTIRKPK 285
Query: 580 LPLDM 594
P+D+
Sbjct: 286 KPIDL 290
>SB_25097| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 118
Score = 87.0 bits (206), Expect = 1e-17
Identities = 38/82 (46%), Positives = 61/82 (74%)
Frame = +1
Query: 181 ISNDGATIMKLLDIIHPAAKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVH 360
++NDG I++ + + HPAAK++++I+++QD EVGDGTTSV+ILAGE + +PF+E+ +H
Sbjct: 1 MTNDGNAILREIQVKHPAAKSMIEISRTQDEEVGDGTTSVIILAGEFMSVAEPFLEQQMH 60
Query: 361 PRVLIRAVRTASRLAIEKIKEQ 426
P +I A R A I+ +K+Q
Sbjct: 61 PTQIIAAYRLAMDDMIDILKQQ 82
>SB_25096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 315
Score = 77.8 bits (183), Expect = 9e-15
Identities = 34/71 (47%), Positives = 53/71 (74%)
Frame = +1
Query: 214 LDIIHPAAKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTA 393
+ + HPAAK++++I+++QD EVGDGTTSV+ILAGE + +PF+E+ +HP +I A R A
Sbjct: 209 IQVKHPAAKSMIEISRTQDEEVGDGTTSVIILAGEFMSVAEPFLEQQMHPTQIIAAYRLA 268
Query: 394 SRLAIEKIKEQ 426
I+ +K+Q
Sbjct: 269 MDDMIDILKQQ 279
>SB_4934| Best HMM Match : NAD_binding_2 (HMM E-Value=4.8)
Length = 186
Score = 62.1 bits (144), Expect = 5e-10
Identities = 31/56 (55%), Positives = 41/56 (73%), Gaps = 2/56 (3%)
Frame = +1
Query: 64 KPQLV--SNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDII 225
KPQ + +NI A + V DA+RT+LGP+GMDK+I NG I+NDGATI KL+D +
Sbjct: 21 KPQEIRMTNITAAKAVADAIRTSLGPKGMDKMIQGGNGDVTITNDGATI-KLIDTV 75
>SB_49248| Best HMM Match : Cpn60_TCP1 (HMM E-Value=1.6)
Length = 278
Score = 54.8 bits (126), Expect = 7e-08
Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 4/92 (4%)
Frame = +1
Query: 103 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDI----IHPAAKTLVDIAKSQD 270
+ DAV TLGP+G + +I G I+ DG T+ K +++ + A+ + D+A + +
Sbjct: 79 LADAVAVTLGPKGKNVIIEQSFGGPKITKDGVTVAKAIELKDKYQNIGARLVQDVANNTN 138
Query: 271 AEVGDGTTSVVILAGEILKRLKPFVEEGVHPR 366
E GDGTT+ +LA I V +G +P+
Sbjct: 139 EEAGDGTTTATVLARSIATEGFLHVSKGANPQ 170
>SB_30876| Best HMM Match : Ribosomal_S16 (HMM E-Value=7.1)
Length = 131
Score = 52.0 bits (119), Expect = 5e-07
Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 6/91 (6%)
Frame = +1
Query: 463 RDLLLKCASTAMSSKLIHQQKDHFSKIVVDAVLSL------DTPLLPLDMIGIKKVPGGA 624
RD ++ A+TA+SSKLI QQ D F+ ++VDAV+++ P+ I + K GG+
Sbjct: 10 RDCIVSAANTALSSKLIGQQGDFFANMIVDAVMAVKRTGNKGEAKYPIKAINVLKAHGGS 69
Query: 625 LEDSFLVPGVAFKKLSVTLAFECXRRHTKTA 717
++S LV G A L+ T+A + + A
Sbjct: 70 AKESILVDGYA---LNCTIASQAMPKQVTNA 97
>SB_56262| Best HMM Match : Cpn60_TCP1 (HMM E-Value=6.6e-15)
Length = 563
Score = 51.6 bits (118), Expect = 7e-07
Identities = 21/83 (25%), Positives = 45/83 (54%)
Frame = +1
Query: 85 INACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIIHPAAKTLVDIAKS 264
+ CQ ++ + GP G+D ++ +G +I+N G+ I++ L + +P + +V+ A+S
Sbjct: 6 LQTCQNFERILKKSFGPNGLDVMLRSSSGNILITNSGSMILESLTMGNPTERMIVEAARS 65
Query: 265 QDAEVGDGTTSVVILAGEILKRL 333
G G + +I+ EI + +
Sbjct: 66 LSGRTGSGASYFIIILAEIFREI 88
>SB_29096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 41
Score = 31.1 bits (67), Expect = 1.00
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +1
Query: 313 GEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQ 426
GE + +PF+E+ +HP +I A R A I+ +K+Q
Sbjct: 2 GEFMSVAEPFLEQQMHPTQIIAAYRLAMDDMIDILKQQ 39
>SB_58467| Best HMM Match : 7tm_1 (HMM E-Value=3.6e-10)
Length = 340
Score = 29.5 bits (63), Expect = 3.0
Identities = 20/60 (33%), Positives = 33/60 (55%)
Frame = +1
Query: 481 CASTAMSSKLIHQQKDHFSKIVVDAVLSLDTPLLPLDMIGIKKVPGGALEDSFLVPGVAF 660
C+ST SS IHQ+ S ++V ++ L L + ++ +KKVP + + LV +AF
Sbjct: 19 CSSTERSSASIHQEVWLVSLLLV-VIIGLSLNLSVISLVMMKKVPRRNM--NLLVANMAF 75
>SB_6378| Best HMM Match : Keratin_B2 (HMM E-Value=0.1)
Length = 269
Score = 29.5 bits (63), Expect = 3.0
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = +3
Query: 87 QCLSTCCRCGQNHPGSPWYGQADCRSQWKGGYIKRWCNDHEATGYHSPCR*DSC 248
QC + C+ G++ GSP +ADC GG ++ C H + C SC
Sbjct: 145 QCCRSVCKVGRDCVGSPCSSRADC-----GGPFEQSCCGHRCV-FGKSCYGRSC 192
>SB_3214| Best HMM Match : Keratin_B2 (HMM E-Value=0.096)
Length = 191
Score = 29.5 bits (63), Expect = 3.0
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = +3
Query: 87 QCLSTCCRCGQNHPGSPWYGQADCRSQWKGGYIKRWCNDHEATGYHSPCR*DSC 248
QC + C+ G++ GSP +ADC GG ++ C H + C SC
Sbjct: 67 QCCRSVCKVGRDCVGSPCSSRADC-----GGPFEQSCCGHRCV-FGKSCYGRSC 114
>SB_7007| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 608
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/30 (40%), Positives = 22/30 (73%)
Frame = +2
Query: 626 LKTRSWYLVWLSRNFQLRWLLNAXEDIPRL 715
L T+ WY +WLS + +L +L++A +D+ R+
Sbjct: 210 LVTQIWYSLWLSAS-ELEFLVSALQDLTRI 238
>SB_48461| Best HMM Match : zf-CCHC (HMM E-Value=0.0016)
Length = 327
Score = 29.1 bits (62), Expect = 4.0
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +3
Query: 102 CCRCGQNHPGSPW-YGQADCRSQWKGGYIKRWC 197
C RCG+NHP S + +A C K G+I C
Sbjct: 92 CYRCGKNHPPSKCRFKEATCHYCKKKGHIVAKC 124
>SB_25009| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 641
Score = 29.1 bits (62), Expect = 4.0
Identities = 19/61 (31%), Positives = 28/61 (45%)
Frame = -2
Query: 356 TPSSTNGFNLFRISPANITTEVVPSPTSAS*DFAISTRVLAAG*MISSSFMIVAPSFDIT 177
TP+++N F + T V+P PTSAS S+ I+++ V PS T
Sbjct: 447 TPTASNAFTETTTVTSTTTITVLPQPTSASSSITPSSTPATGTATIATATYSVPPSVAPT 506
Query: 176 A 174
A
Sbjct: 507 A 507
>SB_40864| Best HMM Match : Pox_G5 (HMM E-Value=0.48)
Length = 518
Score = 25.8 bits (54), Expect(2) = 4.7
Identities = 22/76 (28%), Positives = 34/76 (44%)
Frame = -1
Query: 303 HYRGGSIANLGILRLCNIHKSLSGRVNDIQ*LHDRCTIV*YNRLSIVIYNQLVHTTGTQG 124
H + + ++GI R CN + L + D + H T S+ +N +V+ TQ
Sbjct: 84 HNQYDLLDDIGIFRRCNDQEELVVKQVDYETTHLYTT-----NASVNAHNNMVY---TQS 135
Query: 123 GSDRIDNKLTGIDVGD 76
SD+ K I VGD
Sbjct: 136 DSDKAQVKAIDIVVGD 151
Score = 21.4 bits (43), Expect(2) = 4.7
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = -1
Query: 375 DQNTRVNTFFNKRLQPLQNFTGQYHYRGG 289
+ NT + + + ++ T QYH RGG
Sbjct: 22 EDNTDDDVPITEDVNEQESDTNQYHMRGG 50
>SB_36238| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 278
Score = 28.7 bits (61), Expect = 5.3
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = +1
Query: 385 RTASRLAIEKIKEQAVKIDNKSPEEQRDLLLKCASTAMSSKLIHQQKDHFSKIVVD 552
RTA + I + + +S +E LL+C ++SK QK++ +KI++D
Sbjct: 50 RTAENSSYPSIASEISSVARESRDED---LLRCDEVTINSKDEETQKENGNKIIID 102
>SB_22952| Best HMM Match : EGF_2 (HMM E-Value=2e-23)
Length = 300
Score = 28.7 bits (61), Expect = 5.3
Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Frame = +3
Query: 90 CLSTCCRCGQNHPGSPWYGQADCRSQWKGGYIKRWC-NDHEATGYHSPCR*DSCGYC 257
C TC C N SP+ GQ +C S + G ++ C D C G C
Sbjct: 142 CQGTC-DCKNNATCSPFTGQCNCTSGFTGDRCEKQCAGDSGGVDCRQHCNCTEWGTC 197
>SB_41690| Best HMM Match : DSL (HMM E-Value=0)
Length = 2798
Score = 28.3 bits (60), Expect = 7.0
Identities = 10/30 (33%), Positives = 12/30 (40%)
Frame = +3
Query: 144 GQADCRSQWKGGYIKRWCNDHEATGYHSPC 233
G DC W GG +C H + H C
Sbjct: 1128 GSKDCHDGWYGGTCSIYCLPHNGSSGHYDC 1157
>SB_56859| Best HMM Match : rve (HMM E-Value=4.8e-35)
Length = 1671
Score = 27.9 bits (59), Expect = 9.3
Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Frame = +3
Query: 9 QNATANTFTEGGNGPDAGQAPARLQHQCLSTCCRCGQN-HPGSPWYGQADCRSQWKGGYI 185
Q+A + + + +P + C RCG+N HP + +A C K G+I
Sbjct: 353 QSAPSTLSSTSASVKKVSSSPLPRSKSEIKECYRCGKNHHPSKCRFKEATCHYCKKKGHI 412
Query: 186 KRWC 197
C
Sbjct: 413 VAKC 416
>SB_53400| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1130
Score = 27.9 bits (59), Expect = 9.3
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = +1
Query: 355 VHPRVLIRAVRTASRLAIEKIKEQAVKIDNKSPEEQRD---LLLKCAS 489
V P + + R A R+ K + DNK P+E+ D L KCAS
Sbjct: 863 VRPTYMYKHCRLACRVCTPVKKHEGPPCDNKDPDEECDHWAKLGKCAS 910
>SB_57323| Best HMM Match : ShTK (HMM E-Value=0)
Length = 911
Score = 27.9 bits (59), Expect = 9.3
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +3
Query: 165 QWKGGYIKRWCNDHEATGY-HSPCR*DSCGYC 257
+WKG WCND + Y CR +CGYC
Sbjct: 817 KWKG---YGWCNDGDHDKYMEEVCR-KTCGYC 844
>SB_41314| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1388
Score = 27.9 bits (59), Expect = 9.3
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +3
Query: 72 ARLQHQCLSTCCRCGQNHPGSPWYGQADCRSQWKGGYIKRWCNDHEAT 215
+RLQH+C++ C CG++ SP + +W Y CN + T
Sbjct: 412 SRLQHKCVNLCYGCGES-DCSPLVPPPEQDHRWDWKYCPE-CNRYFRT 457
>SB_34182| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 242
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 64 KPQLVSNINACQLVVDAVRTTLGPRGMD 147
K L+S I C LV +A +T+G +G D
Sbjct: 26 KKDLISEIRHCYLVSNAYPSTVGAKGFD 53
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,046,072
Number of Sequences: 59808
Number of extensions: 517575
Number of successful extensions: 1650
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1639
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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