Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0907
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    24   1.3  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    23   3.1  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   5.3  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   5.3  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -1

Query: 348 FNKRLQPLQNFTGQYHYRGGSIANLGILRLCNIHK 244
           +NK ++P+QN T + H   G    L  ++L N+++
Sbjct: 38  YNKLIRPVQNMTEKVHVNFG----LAFVQLINVNE 68


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +1

Query: 193 GATIMKLLDIIHPAAKTLVDIAKSQ 267
           G   +KLL+IIH   K ++ + K +
Sbjct: 241 GKNQIKLLEIIHGLTKKVIQLKKEE 265


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 10/47 (21%), Positives = 23/47 (48%)
 Frame = -1

Query: 363 RVNTFFNKRLQPLQNFTGQYHYRGGSIANLGILRLCNIHKSLSGRVN 223
           ++ T+F+K    + N     +++GG    L   R C  ++  + ++N
Sbjct: 460 KLYTYFDKCDTLINNAVAVENFKGGMYLRLKARRACMNYERFTYKIN 506


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 10/47 (21%), Positives = 23/47 (48%)
 Frame = -1

Query: 363 RVNTFFNKRLQPLQNFTGQYHYRGGSIANLGILRLCNIHKSLSGRVN 223
           ++ T+F+K    + N     +++GG    L   R C  ++  + ++N
Sbjct: 460 KLYTYFDKCDTLINNAVAVENFKGGMYLRLKARRACMNYERFTYKIN 506


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,564
Number of Sequences: 438
Number of extensions: 4006
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)