Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0907
(750 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g11830.1 68416.m01450 chaperonin, putative similar to SWISS-P... 299 1e-81
At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit / TCP... 164 5e-41
At5g20890.1 68418.m02481 chaperonin, putative similar to SWISS-P... 162 2e-40
At3g18190.1 68416.m02314 chaperonin, putative similar to SWISS-P... 162 3e-40
At5g26360.1 68418.m03151 chaperonin, putative similar to SWISS-P... 149 3e-36
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 136 1e-32
At3g03960.1 68416.m00415 chaperonin, putative similar to SWISS-P... 124 8e-29
At3g02530.1 68416.m00241 chaperonin, putative similar to SWISS-P... 106 2e-23
At5g16070.1 68418.m01878 chaperonin, putative similar to SWISS-P... 102 2e-22
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 93 1e-19
At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha s... 64 1e-10
At5g56500.1 68418.m07051 chaperonin, putative similar to SWISS-P... 56 2e-08
At5g18820.1 68418.m02236 chaperonin, putative similar to SWISS-P... 56 3e-08
At1g55490.2 68414.m06348 RuBisCO subunit binding-protein beta su... 55 4e-08
At1g55490.1 68414.m06347 RuBisCO subunit binding-protein beta su... 55 4e-08
At3g13470.1 68416.m01695 chaperonin, putative similar SWISS-PROT... 54 1e-07
At3g13860.1 68416.m01751 chaperonin, putative similar to SWISS-P... 53 2e-07
At1g26230.1 68414.m03200 chaperonin, putative similar to SWISS-P... 52 4e-07
At3g23990.1 68416.m03013 chaperonin (CPN60) (HSP60) identical to... 49 4e-06
At2g33210.1 68415.m04069 chaperonin, putative similar to SWISS-P... 49 4e-06
At1g05940.1 68414.m00623 amino acid permease family protein low ... 32 0.47
At1g67760.1 68414.m07732 T-complex protein 1 epsilon subunit, pu... 30 1.4
At5g64910.1 68418.m08165 expressed protein ; expression support... 29 2.5
At5g38350.1 68418.m04628 disease resistance protein (NBS-LRR cla... 29 3.3
At5g28250.1 68418.m03425 Ulp1 protease family protein contains P... 29 3.3
At4g16530.1 68417.m02502 expressed protein contains Pfam profile... 29 4.4
At1g16560.3 68414.m01985 Per1-like family protein contains Pfam ... 28 7.6
At1g16560.2 68414.m01984 Per1-like family protein contains Pfam ... 28 7.6
At1g16560.1 68414.m01983 Per1-like family protein contains Pfam ... 28 7.6
>At3g11830.1 68416.m01450 chaperonin, putative similar to
SWISS-PROT:P80313 T-complex protein 1, eta subunit
(TCP-1-eta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 557
Score = 299 bits (734), Expect = 1e-81
Identities = 152/229 (66%), Positives = 180/229 (78%)
Frame = +1
Query: 4 SSKMQPQILLLREGTDQTQGKPQLVSNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVI 183
+S MQPQI+LL+EGTD +QGK QLVSNINAC V D VRTTLGPRGMDKLI D G I
Sbjct: 2 ASMMQPQIILLKEGTDTSQGKAQLVSNINACTAVGDVVRTTLGPRGMDKLIHDDKGSVTI 61
Query: 184 SNDGATIMKLLDIIHPAAKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHP 363
SNDGATIMKLLDI+HPAAK LVDIAKSQD+EVGDGTT+VV+LA E LK KPF+E+GVH
Sbjct: 62 SNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLKEAKPFIEDGVHA 121
Query: 364 RVLIRAVRTASRLAIEKIKEQAVKIDNKSPEEQRDLLLKCASTAMSSKLIHQQKDHFSKI 543
+ LIR+ RTAS LAI K+KE AV I+ KS EE++ LL KCA+T +SSKLI +K+ F+ +
Sbjct: 122 QNLIRSYRTASTLAIAKVKELAVSIEGKSVEEKKGLLAKCAATTLSSKLIGGEKEFFATM 181
Query: 544 VVDAVLSLDTPLLPLDMIGIKKVPGGALEDSFLVPGVAFKKLSVTLAFE 690
VVDAV+++ L++IGIKKVPGG + DSFLV GVAFKK FE
Sbjct: 182 VVDAVMAIGND-DRLNLIGIKKVPGGNMRDSFLVDGVAFKKTFSYAGFE 229
>At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit /
TCP-1-alpha / chaperonin (CCT1) identical to
SWISS-PROT:P28769- T-complex protein 1, alpha subunit
(TCP-1-alpha) [Arabidopsis thaliana]
Length = 545
Score = 164 bits (399), Expect = 5e-41
Identities = 91/209 (43%), Positives = 129/209 (61%), Gaps = 6/209 (2%)
Frame = +1
Query: 49 DQTQGKPQLVSNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIIH 228
D+ G+ N+ ACQ V + V+T+LGP G+DK++VD G I+NDGATI+++L++ H
Sbjct: 13 DRQSGQDVRTQNVMACQAVSNIVKTSLGPVGLDKMLVDDIGDVTITNDGATILRMLEVEH 72
Query: 229 PAAKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAI 408
PAAK LV++A+ QD EVGDGTTSVVI+A E+LKR V +HP +I R A R +
Sbjct: 73 PAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMRESC 132
Query: 409 EKIKEQAVKIDNKSPEEQRDLLLKCASTAMSSKLIHQQKDHFSKIVVDAVLSLDTP---- 576
+ I+E K+ K + + L+ CA T+MSSKLI D F+ +VV+AVLS+
Sbjct: 133 KYIEE---KLVTKVEKLGKVPLINCAKTSMSSKLISGDSDFFANLVVEAVLSVKMTNQRG 189
Query: 577 --LLPLDMIGIKKVPGGALEDSFLVPGVA 657
P+ I I K G + DS+L+ G A
Sbjct: 190 EIKYPIKGINILKAHGQSARDSYLLNGYA 218
>At5g20890.1 68418.m02481 chaperonin, putative similar to
SWISS-PROT:P78371- T-complex protein 1, beta subunit
(TCP-1-beta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 527
Score = 162 bits (394), Expect = 2e-40
Identities = 94/219 (42%), Positives = 138/219 (63%), Gaps = 4/219 (1%)
Frame = +1
Query: 31 LLREGTDQTQGKPQLVSNINACQLVVDAVRTTLGPRGMDKLIVDHN-GKAV-ISNDGATI 204
+ ++ + +G+ +++ + D V++TLGP+GMDK++ G AV ++NDGATI
Sbjct: 6 IFKDDASEEKGERARMASFVGAMAISDLVKSTLGPKGMDKILQSTGRGHAVTVTNDGATI 65
Query: 205 MKLLDIIHPAAKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAV 384
+K L I +PAAK LVDI+K QD EVGDGTTSVV+LAGE+L+ + V +HP +I
Sbjct: 66 LKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVASKIHPMTIIAGY 125
Query: 385 RTASRLAIEKIKEQAVKIDNK-SPEEQRDLLLKCASTAMSSKLIHQQKDHFSKIVVDAVL 561
R AS A + ++ IDNK + E+ R LLK A T + SK++ Q K+HF+++ VDAV
Sbjct: 126 RMASECARNALLKRV--IDNKDNAEKFRSDLLKIAMTTLCSKILSQDKEHFAEMAVDAVF 183
Query: 562 SLDTPLLPLDMIGIKKVPGGALEDSFLVPG-VAFKKLSV 675
L L+ I I K PGG+L+DSFL G + KK+ +
Sbjct: 184 RLKGS-TNLEAIQIIKKPGGSLKDSFLDEGFILDKKIGI 221
>At3g18190.1 68416.m02314 chaperonin, putative similar to
SWISS-PROT:P50991- T-complex protein 1, delta subunit
(TCP-1-delta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 536
Score = 162 bits (393), Expect = 3e-40
Identities = 85/200 (42%), Positives = 132/200 (66%), Gaps = 4/200 (2%)
Frame = +1
Query: 79 SNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIIHPAAKTLVDIA 258
+NIN+ + V DAVRT+LGP+GMDK+I NG+ +I+NDGATI+ ++++ PAAK LV+++
Sbjct: 32 ANINSARAVSDAVRTSLGPKGMDKMISTANGEVIITNDGATILNKMEVLQPAAKMLVELS 91
Query: 259 KSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVKI 438
KSQD+ GDGTT+VV++AG +LK + + G+HP V+ ++ A AI+ + AV +
Sbjct: 92 KSQDSAAGDGTTTVVVIAGALLKECQSLLTNGIHPTVISDSLHKACGKAIDILTAMAVPV 151
Query: 439 DNKSPEEQRDLLLKCASTAMSSKLIHQQKDHFSKIVVDAVLSLDTPLLP--LDMIGIK-- 606
+ RD L+K AST+++SK++ Q + + VDAVLS+ P P +D+ IK
Sbjct: 152 E----LTDRDSLVKSASTSLNSKVVSQYSTLLAPLAVDAVLSVIDPEKPEIVDLRDIKIV 207
Query: 607 KVPGGALEDSFLVPGVAFKK 666
K GG ++D+ V G+ F K
Sbjct: 208 KKLGGTVDDTHTVKGLVFDK 227
>At5g26360.1 68418.m03151 chaperonin, putative similar to
SWISS-PROT:P50143- T-complex protein 1, gamma subunit
(TCP-1-gamma) [Xenopus laevis]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 555
Score = 149 bits (360), Expect = 3e-36
Identities = 84/225 (37%), Positives = 130/225 (57%), Gaps = 7/225 (3%)
Frame = +1
Query: 13 MQPQILLLREGTDQTQGKPQLVSNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISND 192
M +L+L + + G NI A + V D +RTTLGPR M K+++D G V++ND
Sbjct: 1 MHAPVLVLSDSLKRESGSKVHHGNIQASKAVADIIRTTLGPRSMLKMLLDAGGGIVVTND 60
Query: 193 GATIMKLLDIIHPAAKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVL 372
G I++ LD+ HPAAK++++++++QD EVGDGTTSV++LAGE+L + F+E+ HP V+
Sbjct: 61 GNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEAFLEKNYHPTVI 120
Query: 373 IRAVRTASRLAIEKIKEQAVKIDNKSPEEQRDLLLKCASTAMSSKLIHQQKDHFSKIVVD 552
RA A +I + + A+ ID + L+ C T +S Q D + + +D
Sbjct: 121 CRAYIKALEDSIAVLDKIAMSIDINDRSQVLGLVKSCIGTKFTS----QFGDLIADLAID 176
Query: 553 AV----LSLDTPLLPLDM---IGIKKVPGGALEDSFLVPGVAFKK 666
A + L L +D+ I ++KVPGG EDS ++ GV F K
Sbjct: 177 ATTTVGVDLGQGLREVDIKKYIKVEKVPGGQFEDSEVLKGVMFNK 221
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 136 bits (329), Expect = 1e-32
Identities = 76/218 (34%), Positives = 135/218 (61%), Gaps = 5/218 (2%)
Frame = +1
Query: 28 LLLREGTDQTQ--GKPQLVSNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGAT 201
++LRE +T+ G +NI A + V +R++LGP+GMDK++ +G I+NDGAT
Sbjct: 13 IILREQDQKTRLRGIDAQKANIAAGKAVARILRSSLGPKGMDKMLQGPDGDITITNDGAT 72
Query: 202 IMKLLDIIHPAAKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRA 381
I++ +D+ + AK +V++++SQD E+GDGTT VV++AG +L++ + ++ G+HP +
Sbjct: 73 ILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGALLEQAERQLDRGIHPIRIAEG 132
Query: 382 VRTASRLAIEKIKEQAVKIDNKSPEEQRDLLLKCASTAMSSKLIHQQKDHFSKIVVDAVL 561
ASR+A+E ++ A K + + L++ T +SSK++++ K ++I V AVL
Sbjct: 133 YEMASRVAVEHLERIAQKFE--FDVNNYEPLVQTCMTTLSSKIVNRCKRSLAEIAVKAVL 190
Query: 562 S---LDTPLLPLDMIGIKKVPGGALEDSFLVPGVAFKK 666
+ L+ + LD+I ++ GG LED+ L+ G+ K
Sbjct: 191 AVADLERRDVNLDLIKVEGKVGGKLEDTELIYGILIDK 228
>At3g03960.1 68416.m00415 chaperonin, putative similar to
SWISS-PROT:P42932- T-complex protein 1, theta subunit
(TCP-1-theta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 549
Score = 124 bits (298), Expect = 8e-29
Identities = 77/229 (33%), Positives = 128/229 (55%), Gaps = 8/229 (3%)
Frame = +1
Query: 13 MQPQIL--LLREGTDQTQGKPQ-LVSNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVI 183
MQP + +L+EG G + ++ NI AC+ + RT+LGP GM+K++++H K +
Sbjct: 6 MQPYGIQSMLKEGYRHLSGLDEAVIKNIEACKELSTITRTSLGPNGMNKMVINHLDKLFV 65
Query: 184 SNDGATIMKLLDIIHPAAKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHP 363
+ND ATI+ L+I HPAAK LV AK+Q E+GDG + AGE+L+ + + G+HP
Sbjct: 66 TNDAATIVNELEIQHPAAKLLVLAAKAQQEEIGDGANLTISFAGELLQNAEELIRMGLHP 125
Query: 364 RVLIRAVRTASRLAIEKIKEQAVKIDNKSPE-EQRDLLLKCASTAMSSKLIHQQKDHFSK 540
+I A A+E I EQ V+ +++ + +D ++ A++SK Q+ +
Sbjct: 126 SEIISGYTKAVSKAVE-ILEQLVETGSETMDVRNKDEVISRMRAAVASKQFGQE-EIICS 183
Query: 541 IVVDAVLSLDTPLLP----LDMIGIKKVPGGALEDSFLVPGVAFKKLSV 675
+V DA + + P P +D + + K+ GG L +S +V G+ K +V
Sbjct: 184 LVTDACIQV-CPKNPTNFNVDNVRVSKLLGGGLHNSCIVRGMVLKSDAV 231
>At3g02530.1 68416.m00241 chaperonin, putative similar to
SWISS-PROT:P80317- T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 106 bits (254), Expect = 2e-23
Identities = 56/174 (32%), Positives = 98/174 (56%)
Frame = +1
Query: 85 INACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIIHPAAKTLVDIAKS 264
INA + + D +++ LGP+G K++V +G ++ DG T++K + I +P A + A +
Sbjct: 23 INAAKGLQDVLKSNLGPKGTIKMLVGGSGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVA 82
Query: 265 QDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVKIDN 444
QD GDGTTS VI GE++K+ + ++EG+HPRVL+ A R ++ + +
Sbjct: 83 QDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLDTFKTPV-V 141
Query: 445 KSPEEQRDLLLKCASTAMSSKLIHQQKDHFSKIVVDAVLSLDTPLLPLDMIGIK 606
E +++L A T + +KL D + IVV++VL + P P+D+ ++
Sbjct: 142 MGDEPDKEILKMVARTTLRTKLYEGLADQLTDIVVNSVLCIRKPQEPIDLFMVE 195
>At5g16070.1 68418.m01878 chaperonin, putative similar to
SWISS-PROT:P80317 T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 102 bits (245), Expect = 2e-22
Identities = 55/174 (31%), Positives = 97/174 (55%)
Frame = +1
Query: 85 INACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIIHPAAKTLVDIAKS 264
INA + + D +++ LGP+G K++V +G ++ DG T++K + I +P A + A +
Sbjct: 23 INAAKGLQDVLKSNLGPKGTIKMLVGGSGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVA 82
Query: 265 QDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVKIDN 444
QD GDGTTS VI GE++K+ + ++EG+HPRVL+ A R ++ + +
Sbjct: 83 QDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLDNFKTPV-V 141
Query: 445 KSPEEQRDLLLKCASTAMSSKLIHQQKDHFSKIVVDAVLSLDTPLLPLDMIGIK 606
E +++L A T + +KL D + IVV++VL + P +D+ ++
Sbjct: 142 MGDEVDKEILKMVARTTLRTKLYEGLADQLTDIVVNSVLCIRKPEEAIDLFMVE 195
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 93.5 bits (222), Expect = 1e-19
Identities = 51/154 (33%), Positives = 94/154 (61%), Gaps = 3/154 (1%)
Frame = +1
Query: 214 LDIIHPAAKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTA 393
+D+ + AK +V++++SQD E+GDGTT VV++AG +L++ + ++ G+HP + A
Sbjct: 1 MDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGALLEQAERQLDRGIHPIRIAEGYEMA 60
Query: 394 SRLAIEKIKEQAVKIDNKSPEEQRDLLLKCASTAMSSKLIHQQKDHFSKIVVDAVLS--- 564
SR+A+E ++ A K + + L++ T +SSK++++ K ++I V AVL+
Sbjct: 61 SRVAVEHLERIAQKFE--FDVNNYEPLVQTCMTTLSSKIVNRCKRSLAEIAVKAVLAVAD 118
Query: 565 LDTPLLPLDMIGIKKVPGGALEDSFLVPGVAFKK 666
L+ + LD+I ++ GG LED+ L+ G+ K
Sbjct: 119 LERRDVNLDLIKVEGKVGGKLEDTELIYGILIDK 152
>At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha
subunit, chloroplast / 60 kDa chaperonin alpha subunit /
CPN-60 alpha identical to SWISS-PROT:P21238- RuBisCO
subunit binding-protein alpha subunit, chloroplast
precursor (60 kDa chaperonin alpha subunit, CPN-60
alpha) [Arabidopsis thaliana]
Length = 586
Score = 63.7 bits (148), Expect = 1e-10
Identities = 51/163 (31%), Positives = 84/163 (51%), Gaps = 6/163 (3%)
Frame = +1
Query: 103 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDI---IHPAAKTLV-DIAKSQD 270
+ D V TLGPRG + +++D G + NDG TI + +++ + A L+ ++A +
Sbjct: 68 LADCVGLTLGPRGRN-VVLDEFGSPKVVNDGVTIARAIELPNAMENAGAALIREVASKTN 126
Query: 271 AEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVKIDNKS 450
GDGTT+ ILA EI+K V G +P L R + + IE+++++A
Sbjct: 127 DSAGDGTTTASILAREIIKHGLLSVTSGANPVSLKRGIDKTVQGLIEELQKKA------R 180
Query: 451 PEEQRDLLLKCAS-TAMSSKLIHQQ-KDHFSKIVVDAVLSLDT 573
P + RD + AS +A + LI D K+ D VLS+++
Sbjct: 181 PVKGRDDIRAVASISAGNDDLIGSMIADAIDKVGPDGVLSIES 223
>At5g56500.1 68418.m07051 chaperonin, putative similar to
SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 597
Score = 56.4 bits (130), Expect = 2e-08
Identities = 30/118 (25%), Positives = 61/118 (51%), Gaps = 4/118 (3%)
Frame = +1
Query: 103 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIIHPA----AKTLVDIAKSQD 270
+ D V TLGP+G + ++ G I NDG T+ + +++ P AK + A +
Sbjct: 74 LADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDPVENIGAKLVRQAASKTN 133
Query: 271 AEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVKIDN 444
GDGTT+ V+LA ++ V G +P ++ R + ++ + ++K+ + ++++
Sbjct: 134 DLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTTKALVAELKKMSKEVED 191
>At5g18820.1 68418.m02236 chaperonin, putative similar to
SWISS-PROT:P08926- RuBisCO subunit binding-protein alpha
subunit, chloroplast precursor (60 kDa chaperonin alpha
subunit, CPN-60 alpha)[Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 575
Score = 56.0 bits (129), Expect = 3e-08
Identities = 34/79 (43%), Positives = 48/79 (60%), Gaps = 4/79 (5%)
Frame = +1
Query: 103 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMK---LLDIIHPAAKTLV-DIAKSQD 270
+ DAV TLGPRG + ++ + + VI NDG TI K L D I A TL+ ++A +
Sbjct: 55 LADAVSITLGPRGRNVVLAEKDTIKVI-NDGVTIAKSIELPDTIENAGATLIQEVAIKMN 113
Query: 271 AEVGDGTTSVVILAGEILK 327
GDGTT+ +ILA E++K
Sbjct: 114 ESAGDGTTTAIILAREMIK 132
>At1g55490.2 68414.m06348 RuBisCO subunit binding-protein beta
subunit, chloroplast / 60 kDa chaperonin beta subunit /
CPN-60 beta identical to SWISS-PROT:P21240- RuBisCO
subunit binding-protein beta subunit, chloroplast
precursor (60 kDa chaperonin beta subunit, CPN-60 beta)
[Arabidopsis thaliana]
Length = 600
Score = 55.2 bits (127), Expect = 4e-08
Identities = 30/118 (25%), Positives = 60/118 (50%), Gaps = 4/118 (3%)
Frame = +1
Query: 103 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIIHP----AAKTLVDIAKSQD 270
+ D V TLGP+G + ++ G I NDG T+ + +++ P AK + A +
Sbjct: 78 LADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDPVENIGAKLVRQAAAKTN 137
Query: 271 AEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVKIDN 444
GDGTT+ V+LA + V G +P ++ R + ++ + ++K+ + ++++
Sbjct: 138 DLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAKALVTELKKMSKEVED 195
>At1g55490.1 68414.m06347 RuBisCO subunit binding-protein beta
subunit, chloroplast / 60 kDa chaperonin beta subunit /
CPN-60 beta identical to SWISS-PROT:P21240- RuBisCO
subunit binding-protein beta subunit, chloroplast
precursor (60 kDa chaperonin beta subunit, CPN-60 beta)
[Arabidopsis thaliana]
Length = 600
Score = 55.2 bits (127), Expect = 4e-08
Identities = 30/118 (25%), Positives = 60/118 (50%), Gaps = 4/118 (3%)
Frame = +1
Query: 103 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIIHP----AAKTLVDIAKSQD 270
+ D V TLGP+G + ++ G I NDG T+ + +++ P AK + A +
Sbjct: 78 LADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDPVENIGAKLVRQAAAKTN 137
Query: 271 AEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVKIDN 444
GDGTT+ V+LA + V G +P ++ R + ++ + ++K+ + ++++
Sbjct: 138 DLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAKALVTELKKMSKEVED 195
>At3g13470.1 68416.m01695 chaperonin, putative similar
SWISS-PROT:P21240- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Arabidopsis thaliana]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 596
Score = 54.0 bits (124), Expect = 1e-07
Identities = 30/118 (25%), Positives = 59/118 (50%), Gaps = 4/118 (3%)
Frame = +1
Query: 103 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIIHP----AAKTLVDIAKSQD 270
+ D V TLGP+G + ++ G I NDG T+ + +++ P AK + A +
Sbjct: 74 LADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDPVENIGAKLVRQAAAKTN 133
Query: 271 AEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVKIDN 444
GDGTT+ V+LA + V G +P ++ R + ++ + ++K + ++++
Sbjct: 134 DLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAKALVNELKLMSKEVED 191
>At3g13860.1 68416.m01751 chaperonin, putative similar to
SWISS-PROT:P29197- chaperonin CPN60, mitochondrial
precursor (HSP60) [Arabidopsis thaliana] ; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 572
Score = 52.8 bits (121), Expect = 2e-07
Identities = 37/123 (30%), Positives = 58/123 (47%), Gaps = 4/123 (3%)
Frame = +1
Query: 103 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIIHPA----AKTLVDIAKSQD 270
V +AV+ T+GP+G + +I G I+ DG T+ K + A A+ + +A + +
Sbjct: 53 VAEAVKVTMGPKGRNVIIESSYGGPKITKDGVTVAKSISFQAKAKNIGAELVKQVASATN 112
Query: 271 AEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVKIDNKS 450
GDGTT +L IL V GV+ L + A + +K +AV I +
Sbjct: 113 KVAGDGTTCATVLTQAILIEGCKSVAAGVNVMDLRVGINMAIAAVVSDLKSRAVMI--ST 170
Query: 451 PEE 459
PEE
Sbjct: 171 PEE 173
>At1g26230.1 68414.m03200 chaperonin, putative similar to
SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 611
Score = 52.0 bits (119), Expect = 4e-07
Identities = 28/119 (23%), Positives = 61/119 (51%), Gaps = 4/119 (3%)
Frame = +1
Query: 100 LVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIIHPAAKTLVDIAKSQDAE- 276
+V + TLGP+G + ++ + G I NDG T++K +++ P V + + A+
Sbjct: 61 MVAKLLGVTLGPKGRNVVLQNKYGPPRIVNDGETVLKEIELEDPLENVGVKLVRQAGAKT 120
Query: 277 ---VGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVKIDN 444
GDG+T+ +ILA ++ + G +P + R + ++ + ++K + +I++
Sbjct: 121 NDLAGDGSTTSIILAHGLITEGIKVISAGTNPIQVARGIEKTTKALVLELKSMSREIED 179
>At3g23990.1 68416.m03013 chaperonin (CPN60) (HSP60) identical to
SWISS-PROT:P29197- chaperonin CPN60, mitochondrial
precursor (HSP60) [Arabidopsis thaliana]
Length = 577
Score = 48.8 bits (111), Expect = 4e-06
Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 4/113 (3%)
Frame = +1
Query: 103 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLD----IIHPAAKTLVDIAKSQD 270
+ DAV+ T+GP+G + +I G ++ DG T+ K ++ I + A + +A + +
Sbjct: 53 LADAVKVTMGPKGRNVVIEQSWGAPKVTKDGVTVAKSIEFKDKIKNVGASLVKQVANATN 112
Query: 271 AEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQA 429
GDGTT +L I V G++ L R + A + +K +A
Sbjct: 113 DVAGDGTTCATVLTRAIFAEGCKSVAAGMNAMDLRRGISMAVDAVVTNLKSKA 165
>At2g33210.1 68415.m04069 chaperonin, putative similar to
SWISS-PROT:Q05046- chaperonin CPN60-2, mitochondrial
precursor (HSP60-2) [Cucurbita maxima]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 585
Score = 48.8 bits (111), Expect = 4e-06
Identities = 29/113 (25%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Frame = +1
Query: 103 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLD----IIHPAAKTLVDIAKSQD 270
+ DAV+ T+GP+G + +I G ++ DG T+ K ++ I + A + +A + +
Sbjct: 54 LADAVKVTMGPKGRNVIIEQSWGAPKVTKDGVTVAKSIEFKDRIKNVGASLVKQVANATN 113
Query: 271 AEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQA 429
GDGTT +L I V G++ L R ++ A + ++ +A
Sbjct: 114 DVAGDGTTCATVLTRAIFTEGCKSVAAGMNAMDLRRGIKLAVDTVVTNLQSRA 166
>At1g05940.1 68414.m00623 amino acid permease family protein low
similarity to SP|P30823 High-affinity cationic amino
acid transporter-1 (CAT-1) {Rattus norvegicus}; contains
Pfam profile PF00324: Amino acid permease
Length = 569
Score = 31.9 bits (69), Expect = 0.47
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Frame = +1
Query: 148 KLIVD-HNGKAVISNDGATIMKLLDIIHPAAKTLVDIAKSQDAEVGDGTTSVVILAGEIL 324
+L++D H G A IS A+ L + PA K + + E+ G S+ ILA +L
Sbjct: 136 QLMLDYHIGAASISRSLASYAVALLELFPALKGSIPLWMGSGKELLGGLLSLNILAPILL 195
Query: 325 KRLKPFVEEGVHPRVLIRAVRTASRLAI 408
L + +GV + +V TA+++ I
Sbjct: 196 ALLTLVLCQGVRESSAVNSVMTATKVVI 223
>At1g67760.1 68414.m07732 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative similar to chaperonin containing TCP-1 (CCT)
epsilon subunit [Tetrahymena pyriformis] GI:15824416,
SP|P80316 T-complex protein 1, epsilon subunit
(TCP-1-epsilon) (CCT-epsilon) {Mus musculus}
Length = 142
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Frame = +1
Query: 28 LLLREGTDQTQ--GKPQLVSNINACQLVVDAVRTTLGPRGMDK 150
++LRE +T+ G +NI+A + V +R++LGP+GM+K
Sbjct: 13 IILREQDQKTRLKGIDAQKANISAGKAVARILRSSLGPKGMEK 55
>At5g64910.1 68418.m08165 expressed protein ; expression supported
by MPSS
Length = 487
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 523 KDHFSKIVVDAVLSLDTPLLPLDMIGIKKVPG 618
KD ++V V+ +D+P+ P D IG+ V G
Sbjct: 245 KDENKDVLVPVVVCIDSPIPPSDEIGVASVQG 276
>At5g38350.1 68418.m04628 disease resistance protein (NBS-LRR
class), putative domain signature NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 833
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -1
Query: 738 LNMRSAICSLGMSSXAFKSQRN*KFLESHTRYQE 637
L +R+ C L +S AF N KFL H Y +
Sbjct: 384 LEVRNLSCQLNISERAFDGMSNLKFLRFHDPYDD 417
>At5g28250.1 68418.m03425 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 939
Score = 29.1 bits (62), Expect = 3.3
Identities = 18/56 (32%), Positives = 32/56 (57%)
Frame = +1
Query: 154 IVDHNGKAVISNDGATIMKLLDIIHPAAKTLVDIAKSQDAEVGDGTTSVVILAGEI 321
+VD A I+++ AT++ + I T+VD+ DAE+ D T ++V + G+I
Sbjct: 480 VVDVQSDAEIADNTATVVDVQ--IADNTATVVDV--QSDAEIADNTATLVDVQGDI 531
>At4g16530.1 68417.m02502 expressed protein contains Pfam profile
PF04510: Family of unknown function (DUF577)
Length = 774
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +1
Query: 322 LKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVKIDNKSPEEQ 462
LKR P E+G V+ AV ++ + +E ++ + K + + EE+
Sbjct: 616 LKRASPEAEKGKDEAVVAAAVVKSTAVVVESVESEEPKTEKEEDEER 662
>At1g16560.3 68414.m01985 Per1-like family protein contains Pfam
profile PF04080: Per1-like
Length = 342
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Frame = +3
Query: 90 CLSTCC--RCGQNHPGSPWYGQADCRSQWK 173
C+ C +C + G PWY Q QWK
Sbjct: 43 CVGQLCFPQCNSSSDGGPWYIQEPLYLQWK 72
>At1g16560.2 68414.m01984 Per1-like family protein contains Pfam
profile PF04080: Per1-like
Length = 342
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Frame = +3
Query: 90 CLSTCC--RCGQNHPGSPWYGQADCRSQWK 173
C+ C +C + G PWY Q QWK
Sbjct: 43 CVGQLCFPQCNSSSDGGPWYIQEPLYLQWK 72
>At1g16560.1 68414.m01983 Per1-like family protein contains Pfam
profile PF04080: Per1-like
Length = 342
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Frame = +3
Query: 90 CLSTCC--RCGQNHPGSPWYGQADCRSQWK 173
C+ C +C + G PWY Q QWK
Sbjct: 43 CVGQLCFPQCNSSSDGGPWYIQEPLYLQWK 72
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,820,732
Number of Sequences: 28952
Number of extensions: 360503
Number of successful extensions: 1049
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1027
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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