Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0906
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   2.3  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    23   4.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   7.1  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
 Frame = -2

Query: 632 ACFNSRPRXVKPSRCSDSFSSTGVVPNVFLIPCQSD--PQVERIFLGLTLGNCQARSIPS 459
           A FN      +   C D+ SS          P +S   P+  RI+  +T  +   RS+ +
Sbjct: 631 AAFNISTTIYENQNCLDASSSRRGSKIGSPTPAESTFIPEERRIYSPITFQDVARRSVAN 690

Query: 458 KPYCSANS 435
            P  +A+S
Sbjct: 691 SPTKNADS 698


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -2

Query: 335 NTVRPGYLAFKLVIAR*LSCVRS 267
           N  RP YLA K  +     C+RS
Sbjct: 155 NRNRPAYLASKCALTTLTDCLRS 177


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -2

Query: 656  CILGLWIRACFNSRPRXVKPSRCSDSFSSTGVVPNVFL 543
            C  G   R  +  R   V  + CSD FS  GV+ ++ +
Sbjct: 955  CYYGGDARPAYRRRLN-VNETVCSDYFSQGGVIESIMV 991


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,528
Number of Sequences: 438
Number of extensions: 4835
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)