Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0904
         (400 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q00YT9 Cluster: CG6170-PA, isoform A; n=2; Ostreococcus...    34   0.89 
UniRef50_Q8IYL2 Cluster: Putative methyltransferase UPF0383; n=1...    31   6.3  

>UniRef50_Q00YT9 Cluster: CG6170-PA, isoform A; n=2; Ostreococcus
           tauri|Rep: CG6170-PA, isoform A - Ostreococcus tauri
          Length = 176

 Score = 34.3 bits (75), Expect = 0.89
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = -3

Query: 395 GALTTXVCGRYQHACLSPAPSTAAEYYTKDYDD*QGTWCY 276
           GA     CGRYQ+AC     S +A      +DD    WCY
Sbjct: 111 GACGKSFCGRYQNACAKKHASESAHDVCVSWDD-MSCWCY 149


>UniRef50_Q8IYL2 Cluster: Putative methyltransferase UPF0383; n=18;
           Tetrapoda|Rep: Putative methyltransferase UPF0383 - Homo
           sapiens (Human)
          Length = 757

 Score = 31.5 bits (68), Expect = 6.3
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +2

Query: 8   CRYLYLPTVFLDFISVYVCRFKSSQQI*KYLDY 106
           CR+  LP  F DFI  Y  R     Q  +YLD+
Sbjct: 442 CRFFVLPCCFFDFIGRYSRRQSKKTQYREYLDF 474


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 296,384,688
Number of Sequences: 1657284
Number of extensions: 4374125
Number of successful extensions: 6317
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6317
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 16926675320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)