Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0904
         (400 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   2.5  
SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyc...    25   5.7  

>SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 85

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 9/37 (24%), Positives = 21/37 (56%)
 Frame = -1

Query: 238 ISSLINHCPSKILILQVFLSFSQNHFSVMMKLMRPVR 128
           +  L+ HC + +    V L +++N F + +  +RP++
Sbjct: 1   MGKLVKHCHTSLHSELVILFYAKNRFCISIDHLRPLK 37


>SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 536

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 8/32 (25%), Positives = 18/32 (56%)
 Frame = -1

Query: 244 SNISSLINHCPSKILILQVFLSFSQNHFSVMM 149
           + +++ +NHCP  + +  V++     H S +M
Sbjct: 95  ARLTAQMNHCPVNVKLYSVYVPMWGTHHSKIM 126


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,266,560
Number of Sequences: 5004
Number of extensions: 19297
Number of successful extensions: 26
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)