Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0904
         (400 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24395| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.2  
SB_50323| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-34)                 27   7.4  

>SB_24395| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 887

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = -1

Query: 244 SNISSLINHCPSKILILQVFLSFSQ 170
           S+++ +++ C  KI +L+ FLSFSQ
Sbjct: 197 SSVTHMLDTCKRKIPVLRPFLSFSQ 221


>SB_50323| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-34)
          Length = 411

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = -3

Query: 377 VCGRYQHACLSPAPSTAA-EYYT 312
           +CG Y  AC +P P  A+ E YT
Sbjct: 144 ICGTYLFACFAPVPYLASGEQYT 166


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,295,229
Number of Sequences: 59808
Number of extensions: 143291
Number of successful extensions: 199
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)